Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:54:15 (12005): wrapper (7.7.26015): starting
21:54:15 (12005): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 21:54:15] Arguments: --nthreads 8
[2026-03-12 21:54:15] Threads: 8
[2026-03-12 21:54:15] Checking for CVMFS
[2026-03-12 21:54:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 21:54:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 21:54:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 21:54:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 21:54:19] 2.11.2.0 25223 23362 105252 157214 1 54 20677086 25165825 4834 130560 152 6819820 99.832 3291804 157 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-12 21:54:19] CVMFS is ok
[2026-03-12 21:54:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 21:54:19] Checking for apptainer binary...
[2026-03-12 21:54:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 21:54:19] Running /usr/bin/apptainer --version
[2026-03-12 21:54:19] apptainer version 1.3.2-1.el7
[2026-03-12 21:54:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 21:54:31] cg-vwn444.simple-grid.lan
[2026-03-12 21:54:31] apptainer works
[2026-03-12 21:54:31] Set ATHENA_PROC_NUMBER=8
[2026-03-12 21:54:31] Set ATHENA_CORE_NUMBER=8
[2026-03-12 21:54:31] Starting ATLAS job with PandaID=7051177065
[2026-03-12 21:54:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 06:22:01]  *** The last 200 lines of the pilot log: ***
[2026-03-13 06:22:01] 2026-03-13 05:21:05,743 | INFO     | total number of processed events: 400 (read)
[2026-03-13 06:22:01] 2026-03-13 05:21:05,745 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7051177065/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 06:22:01] 2026-03-13 05:21:05,746 | INFO     | extracted standard info from prmon json
[2026-03-13 06:22:01] 2026-03-13 05:21:05,746 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 06:22:01] 2026-03-13 05:21:05,746 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 06:22:01] 2026-03-13 05:21:05,746 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 06:22:01] 2026-03-13 05:21:05,747 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 06:22:01] 2026-03-13 05:21:05,757 | INFO     | fitting pss+swap vs Time
[2026-03-13 06:22:01] 2026-03-13 05:21:05,763 | INFO     | sum of square deviations: 36257944940.0
[2026-03-13 06:22:01] 2026-03-13 05:21:05,771 | INFO     | sum of deviations: 190041564524.0
[2026-03-13 06:22:01] 2026-03-13 05:21:05,771 | INFO     | mean x: 1773364357.0
[2026-03-13 06:22:01] 2026-03-13 05:21:05,771 | INFO     | mean y: 2485032.0143149286
[2026-03-13 06:22:01] 2026-03-13 05:21:05,771 | INFO     | intersect: -9292386407.419706
[2026-03-13 06:22:01] 2026-03-13 05:21:05,772 | INFO     | chi2: 5.283970071753361
[2026-03-13 06:22:01] 2026-03-13 05:21:05,773 | INFO     | sum of square deviations: 35157068485.0
[2026-03-13 06:22:01] 2026-03-13 05:21:05,780 | INFO     | sum of deviations: 220308299486.99997
[2026-03-13 06:22:01] 2026-03-13 05:21:05,785 | INFO     | mean x: 1773364204.5
[2026-03-13 06:22:01] 2026-03-13 05:21:05,785 | INFO     | mean y: 2489187.5743801654
[2026-03-13 06:22:01] 2026-03-13 05:21:05,785 | INFO     | intersect: -11110122560.222528
[2026-03-13 06:22:01] 2026-03-13 05:21:05,786 | INFO     | chi2: 4.530228437483978
[2026-03-13 06:22:01] 2026-03-13 05:21:05,786 | INFO     | current chi2=4.530228437483978 (change=14.26468401663886 %)
[2026-03-13 06:22:01] 2026-03-13 05:21:05,786 | INFO     | right removable region: 483
[2026-03-13 06:22:01] 2026-03-13 05:21:05,787 | INFO     | sum of square deviations: 35157068485.0
[2026-03-13 06:22:01] 2026-03-13 05:21:05,794 | INFO     | sum of deviations: 27859665599.499985
[2026-03-13 06:22:01] 2026-03-13 05:21:05,795 | INFO     | mean x: 1773364509.5
[2026-03-13 06:22:01] 2026-03-13 05:21:05,795 | INFO     | mean y: 2507481.729338843
[2026-03-13 06:22:01] 2026-03-13 05:21:05,795 | INFO     | intersect: -1402767313.6299622
[2026-03-13 06:22:01] 2026-03-13 05:21:05,796 | INFO     | chi2: 1.2588511102552569
[2026-03-13 06:22:01] 2026-03-13 05:21:05,796 | INFO     | current chi2=1.2588511102552569 (change=76.17603632948781 %)
[2026-03-13 06:22:01] 2026-03-13 05:21:05,797 | INFO     | sum of square deviations: 34078704080.0
[2026-03-13 06:22:01] 2026-03-13 05:21:05,812 | INFO     | sum of deviations: -12742371435.000008
[2026-03-13 06:22:01] 2026-03-13 05:21:05,812 | INFO     | mean x: 1773364662.0
[2026-03-13 06:22:01] 2026-03-13 05:21:05,813 | INFO     | mean y: 2513196.607515658
[2026-03-13 06:22:01] 2026-03-13 05:21:05,813 | INFO     | intersect: 665592143.5023545
[2026-03-13 06:22:01] 2026-03-13 05:21:05,813 | INFO     | chi2: 0.8211817202039224
[2026-03-13 06:22:01] 2026-03-13 05:21:05,814 | INFO     | current chi2=0.8211817202039224 (change=34.76736736265724 %)
[2026-03-13 06:22:01] 2026-03-13 05:21:05,814 | INFO     | sum of square deviations: 33022619162.5
[2026-03-13 06:22:01] 2026-03-13 05:21:05,821 | INFO     | sum of deviations: -23429017890.499996
[2026-03-13 06:22:01] 2026-03-13 05:21:05,822 | INFO     | mean x: 1773364814.5
[2026-03-13 06:22:01] 2026-03-13 05:21:05,822 | INFO     | mean y: 2514739.099156118
[2026-03-13 06:22:01] 2026-03-13 05:21:05,822 | INFO     | intersect: 1260688591.4168797
[2026-03-13 06:22:01] 2026-03-13 05:21:05,823 | INFO     | chi2: 0.7915864475460671
[2026-03-13 06:22:01] 2026-03-13 05:21:05,823 | INFO     | current chi2=0.7915864475460671 (change=3.6039858084646594 %)
[2026-03-13 06:22:01] 2026-03-13 05:21:05,823 | INFO     | left removable region: 30
[2026-03-13 06:22:01] 2026-03-13 05:21:05,824 | INFO     | sum of square deviations: 28825106042.0
[2026-03-13 06:22:01] 2026-03-13 05:21:05,838 | INFO     | sum of deviations: 926339900.0000023
[2026-03-13 06:22:01] 2026-03-13 05:21:05,839 | INFO     | mean x: 1773365089.0
[2026-03-13 06:22:01] 2026-03-13 05:21:05,839 | INFO     | mean y: 2520428.8785871966
[2026-03-13 06:22:01] 2026-03-13 05:21:05,839 | INFO     | intersect: -54469433.94495908
[2026-03-13 06:22:01] 2026-03-13 05:21:05,840 | INFO     | chi2: 0.008387890375563792
[2026-03-13 06:22:01] 2026-03-13 05:21:05,840 | INFO     | current memory leak: 0.03 B/s (using 453 data points, chi2=0.01)
[2026-03-13 06:22:01] 2026-03-13 05:21:05,841 | INFO     | could have reported an average CPU frequency of 1999 MHz (20 samples)
[2026-03-13 06:22:01] 2026-03-13 05:21:05,841 | INFO     | ..............................
[2026-03-13 06:22:01] 2026-03-13 05:21:05,841 | INFO     | . Timing measurements:
[2026-03-13 06:22:01] 2026-03-13 05:21:05,841 | INFO     | . get job = 0 s
[2026-03-13 06:22:01] 2026-03-13 05:21:05,841 | INFO     | . initial setup = 103 s
[2026-03-13 06:22:01] 2026-03-13 05:21:05,842 | INFO     | . payload setup = 136 s
[2026-03-13 06:22:01] 2026-03-13 05:21:05,842 | INFO     | . stage-in = 0 s
[2026-03-13 06:22:01] 2026-03-13 05:21:05,842 | INFO     | . payload execution = 29905 s
[2026-03-13 06:22:01] 2026-03-13 05:21:05,842 | INFO     | . stage-out = 2 s
[2026-03-13 06:22:01] 2026-03-13 05:21:05,842 | INFO     | . log creation = 1 s
[2026-03-13 06:22:01] 2026-03-13 05:21:05,842 | INFO     | ..............................
[2026-03-13 06:22:01] 2026-03-13 05:21:06,013 | INFO     | 
[2026-03-13 06:22:01] 2026-03-13 05:21:06,013 | INFO     | job summary report
[2026-03-13 06:22:01] 2026-03-13 05:21:06,013 | INFO     | --------------------------------------------------
[2026-03-13 06:22:01] 2026-03-13 05:21:06,013 | INFO     | PanDA job id: 7051177065
[2026-03-13 06:22:01] 2026-03-13 05:21:06,013 | INFO     | task id: 48966968
[2026-03-13 06:22:01] 2026-03-13 05:21:06,013 | INFO     | errors: (none)
[2026-03-13 06:22:01] 2026-03-13 05:21:06,013 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 06:22:01] 2026-03-13 05:21:06,014 | INFO     | pilot state: finished 
[2026-03-13 06:22:01] 2026-03-13 05:21:06,014 | INFO     | transexitcode: 0
[2026-03-13 06:22:01] 2026-03-13 05:21:06,014 | INFO     | exeerrorcode: 0
[2026-03-13 06:22:01] 2026-03-13 05:21:06,014 | INFO     | exeerrordiag: 
[2026-03-13 06:22:01] 2026-03-13 05:21:06,014 | INFO     | exitcode: 0
[2026-03-13 06:22:01] 2026-03-13 05:21:06,014 | INFO     | exitmsg: OK
[2026-03-13 06:22:01] 2026-03-13 05:21:06,014 | INFO     | cpuconsumptiontime: 118309 s
[2026-03-13 06:22:01] 2026-03-13 05:21:06,014 | INFO     | nevents: 400
[2026-03-13 06:22:01] 2026-03-13 05:21:06,014 | INFO     | neventsw: 0
[2026-03-13 06:22:01] 2026-03-13 05:21:06,014 | INFO     | pid: 20612
[2026-03-13 06:22:01] 2026-03-13 05:21:06,015 | INFO     | pgrp: 20612
[2026-03-13 06:22:01] 2026-03-13 05:21:06,015 | INFO     | corecount: 8
[2026-03-13 06:22:01] 2026-03-13 05:21:06,015 | INFO     | event service: False
[2026-03-13 06:22:01] 2026-03-13 05:21:06,015 | INFO     | sizes: {0: 2279749, 1: 2280210, 12: 2280210, 30045: 2317998, 30046: 2317997, 30050: 2327051, 30051: 2327235, 30053: 2327429}
[2026-03-13 06:22:01] 2026-03-13 05:21:06,015 | INFO     | --------------------------------------------------
[2026-03-13 06:22:01] 2026-03-13 05:21:06,015 | INFO     | 
[2026-03-13 06:22:01] 2026-03-13 05:21:06,015 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-03-13 06:22:01] 2026-03-13 05:21:06,183 | INFO     | time since job start (30066s) is within the limit (345600.0s)
[2026-03-13 06:22:01] 2026-03-13 05:21:06,393 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,393 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,393 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,394 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,394 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,394 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,395 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,395 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,395 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,395 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 06:22:01] 2026-03-13 05:21:06,395 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,395 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 06:22:01] 2026-03-13 05:21:06,396 | INFO     | job 7051177065 has completed (purged errors)
[2026-03-13 06:22:01] 2026-03-13 05:21:06,396 | INFO     | overall cleanup function is called
[2026-03-13 06:22:01] 2026-03-13 05:21:07,405 | INFO     | --- collectZombieJob: --- 10, [20612]
[2026-03-13 06:22:01] 2026-03-13 05:21:07,405 | INFO     | zombie collector waiting for pid 20612
[2026-03-13 06:22:01] 2026-03-13 05:21:07,405 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 06:22:01] 2026-03-13 05:21:07,405 | INFO     | collected zombie processes
[2026-03-13 06:22:01] 2026-03-13 05:21:07,405 | INFO     | will attempt to kill all subprocesses of pid=20612
[2026-03-13 06:22:01] 2026-03-13 05:21:07,529 | INFO     | process IDs to be killed: [20612] (in reverse order)
[2026-03-13 06:22:01] 2026-03-13 05:21:08,392 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 06:22:01] 2026-03-13 05:21:08,393 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 06:22:01] 2026-03-13 05:21:08,396 | INFO     | did not find any defunct processes belonging to 20612
[2026-03-13 06:22:01] 2026-03-13 05:21:08,399 | INFO     | did not find any defunct processes belonging to 20612
[2026-03-13 06:22:01] 2026-03-13 05:21:08,399 | INFO     | ready for new job
[2026-03-13 06:22:01] 2026-03-13 05:21:08,399 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 06:22:01] 2026-03-13 05:21:08,402 | INFO     | **************************************
[2026-03-13 06:22:01] 2026-03-13 05:21:08,402 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 06:22:01] 2026-03-13 05:21:08,402 | INFO     | **************************************
[2026-03-13 06:22:01] 2026-03-13 05:21:08,402 | INFO     | 
[2026-03-13 06:22:01] 2026-03-13 05:21:08,403 | INFO     | pilot is running in a VM
[2026-03-13 06:22:01] 2026-03-13 05:21:08,403 | INFO     | architecture information:
[2026-03-13 06:22:01] 2026-03-13 05:21:08,412 | INFO     | executing command: cat /etc/os-release
[2026-03-13 06:22:01] 2026-03-13 05:21:08,675 | INFO     | cat /etc/os-release:
[2026-03-13 06:22:01] NAME="CentOS Linux"
[2026-03-13 06:22:01] VERSION="7 (Core)"
[2026-03-13 06:22:01] ID="centos"
[2026-03-13 06:22:01] ID_LIKE="rhel fedora"
[2026-03-13 06:22:01] VERSION_ID="7"
[2026-03-13 06:22:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 06:22:01] ANSI_COLOR="0;31"
[2026-03-13 06:22:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 06:22:01] HOME_URL="https://www.centos.org/"
[2026-03-13 06:22:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 06:22:01] 
[2026-03-13 06:22:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 06:22:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 06:22:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 06:22:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 06:22:01] 
[2026-03-13 06:22:01] 2026-03-13 05:21:08,675 | INFO     | **************************************
[2026-03-13 06:22:01] 2026-03-13 05:21:09,179 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-03-13 06:22:01] 2026-03-13 05:21:09,439 | INFO     | sufficient remaining disk space (495039021056 B)
[2026-03-13 06:22:01] 2026-03-13 05:21:09,440 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 06:22:01] 2026-03-13 05:21:09,440 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 06:22:01] 2026-03-13 05:21:09,440 | INFO     | update_server=False
[2026-03-13 06:22:01] 2026-03-13 05:21:09,440 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 06:22:01] 2026-03-13 05:21:09,441 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 06:22:01] 2026-03-13 05:21:10,174 | INFO     | all data control threads have been joined
[2026-03-13 06:22:01] 2026-03-13 05:21:10,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 06:22:01] 2026-03-13 05:21:10,244 | INFO     | aborting loop
[2026-03-13 06:22:01] 2026-03-13 05:21:10,298 | INFO     | all payload control threads have been joined
[2026-03-13 06:22:01] 2026-03-13 05:21:10,398 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 06:22:01] 2026-03-13 05:21:10,446 | INFO     | [job] retrieve thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:10,468 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:10,497 | INFO     | all job control threads have been joined
[2026-03-13 06:22:01] 2026-03-13 05:21:10,863 | INFO     | [payload] validate_post thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:10,997 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 06:22:01] 2026-03-13 05:21:10,998 | INFO     | [job] validate thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:11,049 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:11,161 | INFO     | [data] copytool_in thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:11,180 | INFO     | [data] control thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:11,250 | INFO     | [job] job monitor thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:11,304 | INFO     | [payload] control thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:11,394 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:11,402 | INFO     | [payload] failed_post thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:11,448 | INFO     | [data] copytool_out thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:11,503 | INFO     | [job] control thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:12,003 | INFO     | [job] queue monitor thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:14,407 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:19,663 | INFO     | job.realtimelogging is not enabled
[2026-03-13 06:22:01] 2026-03-13 05:21:20,669 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 06:22:01] 2026-03-13 05:21:39,342 | INFO     | PID=16102 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 06:22:01] 2026-03-13 05:21:39,343 | INFO     | .. there are 9 such processes running
[2026-03-13 06:22:01] 2026-03-13 05:21:39,344 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 06:22:01] 2026-03-13 05:21:39,344 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 06:22:01] 2026-03-13 05:21:39,344 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 06:22:01] 2026-03-13 05:21:51,775 | INFO     | [monitor] cgroup control has ended
[2026-03-13 06:22:01] 2026-03-13 05:21:52,023 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140518367614784)>', '<ExcThread(monitor, started 140517690038016)>']
[2026-03-13 06:22:01] 2026-03-13 05:21:52,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 06:22:01] 2026-03-13 05:21:52,420 | INFO     | [monitor] control thread has ended
[2026-03-13 06:22:01] 2026-03-13 05:21:57,049 | INFO     | all workflow threads have been joined
[2026-03-13 06:22:01] 2026-03-13 05:21:57,049 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 06:22:01] 2026-03-13 05:21:57,049 | INFO     | traces error code: 0
[2026-03-13 06:22:01] 2026-03-13 05:21:57,049 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 06:22:01] 2026-03-13 05:21:57,361 [wrapper] ==== pilot stdout END ====
[2026-03-13 06:22:01] 2026-03-13 05:21:57,431 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 06:22:01] 2026-03-13 05:21:57,471 [wrapper] pilotpid: 16102
[2026-03-13 06:22:01] 2026-03-13 05:21:57,537 [wrapper] Pilot exit status: 0
[2026-03-13 06:22:01] 2026-03-13 05:21:58,008 [wrapper] pandaids: 7051177065
[2026-03-13 06:22:01] 2026-03-13 05:21:58,485 [wrapper] cleanup supervisor_pilot 32516 16103
[2026-03-13 06:22:01] 2026-03-13 05:21:58,528 [wrapper] Test setup, not cleaning
[2026-03-13 06:22:01] 2026-03-13 05:21:58,602 [wrapper] apfmon messages muted
[2026-03-13 06:22:01] 2026-03-13 05:21:58,667 [wrapper] ==== wrapper stdout END ====
[2026-03-13 06:22:01] 2026-03-13 05:21:58,756 [wrapper] ==== wrapper stderr END ====
[2026-03-13 06:22:01]  *** Error codes and diagnostics ***
[2026-03-13 06:22:01]     "exeErrorCode": 0,
[2026-03-13 06:22:01]     "exeErrorDiag": "",
[2026-03-13 06:22:01]     "pilotErrorCode": 0,
[2026-03-13 06:22:01]     "pilotErrorDiag": "",
[2026-03-13 06:22:01]  *** Listing of results directory ***
[2026-03-13 06:22:01] total 491848
[2026-03-13 06:22:01] -rwx------. 1 boinc boinc     36322 Mar 12 05:54 runpilot2-wrapper.sh
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc      5111 Mar 12 05:56 queuedata.json
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc    585013 Mar 12 05:56 pilot3.tar.gz
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc       100 Mar 12 21:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 06:22:01] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 21:54 run_atlas
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc       105 Mar 12 21:54 job.xml
[2026-03-13 06:22:01] -rw-r--r--. 2 boinc boinc 229734879 Mar 12 21:54 EVNT.48966966._000028.pool.root.1
[2026-03-13 06:22:01] -rw-r--r--. 2 boinc boinc     15845 Mar 12 21:54 start_atlas.sh
[2026-03-13 06:22:01] drwxrwx--x. 2 boinc boinc        68 Mar 12 21:54 shared
[2026-03-13 06:22:01] -rw-r--r--. 2 boinc boinc    597531 Mar 12 21:54 input.tar.gz
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc      6391 Mar 12 21:54 init_data.xml
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc         0 Mar 12 21:54 boinc_lockfile
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc      2568 Mar 12 21:54 pandaJob.out
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc       415 Mar 12 21:59 workernode_map.json
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc   1006522 Mar 12 22:00 agis_schedconf.cvmfs.json
[2026-03-13 06:22:01] drwx------. 5 boinc boinc      4096 Mar 12 22:00 pilot3
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc 260338784 Mar 13 06:19 HITS.48966968._000700.pool.root.1
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc       532 Mar 13 06:19 boinc_task_state.xml
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc      1016 Mar 13 06:20 memory_monitor_summary.json
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc   1511578 Mar 13 06:21 agis_ddmendpoints.agis.ALL.json
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc    682896 Mar 13 06:21 log.48966968._000700.job.log.tgz.1
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc      6313 Mar 13 06:21 heartbeat.json
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc      8192 Mar 13 06:21 boinc_mmap_file
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc        29 Mar 13 06:21 wrapper_checkpoint.txt
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc        95 Mar 13 06:21 pilot_heartbeat.json
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc      4952 Mar 13 06:21 pilotlog.txt
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc   4147952 Mar 13 06:21 log.48966968._000700.job.log.1
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc       357 Mar 13 06:22 output.list
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc       620 Mar 13 06:22 runtime_log
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc   4843520 Mar 13 06:22 result.tar.gz
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc      8816 Mar 13 06:22 runtime_log.err
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc       658 Mar 13 06:22 kr2NDmKFnK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmz8lLDmU7ecFo.diag
[2026-03-13 06:22:01] -rw-r--r--. 1 boinc boinc     20727 Mar 13 06:22 stderr.txt
[2026-03-13 06:22:01] HITS file was successfully produced:
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc 260338784 Mar 13 06:19 shared/HITS.pool.root.1
[2026-03-13 06:22:01]  *** Contents of shared directory: ***
[2026-03-13 06:22:01] total 483924
[2026-03-13 06:22:01] -rw-r--r--. 2 boinc boinc 229734879 Mar 12 21:54 ATLAS.root_0
[2026-03-13 06:22:01] -rw-r--r--. 2 boinc boinc     15845 Mar 12 21:54 start_atlas.sh
[2026-03-13 06:22:01] -rw-r--r--. 2 boinc boinc    597531 Mar 12 21:54 input.tar.gz
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc 260338784 Mar 13 06:19 HITS.pool.root.1
[2026-03-13 06:22:01] -rw-------. 1 boinc boinc   4843520 Mar 13 06:22 result.tar.gz
06:22:03 (12005): run_atlas exited; CPU time 118779.525401
06:22:03 (12005): called boinc_finish(0)

</stderr_txt>
]]>

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