Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:36:27 (194068): wrapper (7.7.26015): starting
09:36:27 (194068): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 09:36:27] Arguments: --nthreads 4
[2026-03-14 09:36:27] Threads: 4
[2026-03-14 09:36:27] Checking for CVMFS
[2026-03-14 09:36:27] No cvmfs_config command found, will try listing directly
[2026-03-14 09:36:27] CVMFS is ok
[2026-03-14 09:36:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 09:36:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 09:36:27] Further information can be found at the LHC@home message board.
[2026-03-14 09:36:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 09:36:27] Checking for apptainer binary...
[2026-03-14 09:36:27] which: no apptainer in ((null))
[2026-03-14 09:36:27] apptainer is not installed, using version from CVMFS
[2026-03-14 09:36:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 09:36:27] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot240/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-14 09:36:27] apptainer works
[2026-03-14 09:36:27] Set ATHENA_PROC_NUMBER=4
[2026-03-14 09:36:27] Set ATHENA_CORE_NUMBER=4
[2026-03-14 09:36:27] Starting ATLAS job with PandaID=7051345653
[2026-03-14 09:36:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot240/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 12:05:46]  *** The last 200 lines of the pilot log: ***
[2026-03-14 12:05:46] 2026-03-14 10:39:59,807 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2514794/.job.ad'
[2026-03-14 12:05:46] 2026-03-14 10:39:59,807 | INFO     | total number of processed events: 400 (read)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,819 | INFO     | using path: /var/lib/boinc/var/slot240/slots/0/PanDA_Pilot-7051345653/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,819 | INFO     | extracted standard info from prmon json
[2026-03-14 12:05:46] 2026-03-14 10:39:59,819 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 12:05:46] 2026-03-14 10:39:59,819 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 12:05:46] 2026-03-14 10:39:59,819 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 12:05:46] 2026-03-14 10:39:59,819 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 12:05:46] 2026-03-14 10:39:59,820 | INFO     | fitting pss+swap vs Time
[2026-03-14 12:05:46] 2026-03-14 10:39:59,820 | INFO     | sum of square deviations: 549294020.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | sum of deviations: 13549306702.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | mean x: 1773481085.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | mean y: 2341795.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | intersect: -43743699989.43583
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | chi2: 1.1160674696561612
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | sum of square deviations: 483971865.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | sum of deviations: 12955321672.499996
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | mean x: 1773480932.5
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | mean y: 2340407.525862069
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | intersect: -47471526612.78689
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | chi2: 1.1172386579288514
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | current chi2=1.1172386579288514 (change=-0.10493884147084391 %)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | right removable region: 115
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | sum of square deviations: 483971865.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | sum of deviations: 1015409019.4999999
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | mean x: 1773481237.5
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | mean y: 2370350.3189655175
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | intersect: -3718525376.6909537
[2026-03-14 12:05:46] 2026-03-14 10:39:59,821 | INFO     | chi2: 0.0005890775794772488
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | current chi2=0.0005890775794772488 (change=99.9472184616528 %)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | sum of square deviations: 424045160.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | sum of deviations: 568838725.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | mean x: 1773481390.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | mean y: 2371477.882882883
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | intersect: -2376679122.9984655
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | chi2: 0.00017689254851356294
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | current chi2=0.00017689254851356294 (change=69.97126445203729 %)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | sum of square deviations: 369281342.5
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | sum of deviations: 411851626.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | mean x: 1773481542.5
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | mean y: 2371915.603773585
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | intersect: -1975554323.5471065
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | chi2: 0.00014791377054197696
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | current chi2=0.00014791377054197696 (change=16.38213605666045 %)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | left removable region: 30
[2026-03-14 12:05:46] 2026-03-14 10:39:59,822 | INFO     | sum of square deviations: 190403570.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | sum of deviations: 115599392.00000001
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | mean x: 1773481817.0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | mean y: 2372749.4588235295
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | intersect: -1074358216.080611
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | chi2: 8.336136879343838e-05
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | current memory leak: 0.61 B/s (using 85 data points, chi2=0.00)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | could have reported an average CPU frequency of 3546 MHz (8 samples)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | ..............................
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | . Timing measurements:
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | . get job = 0 s
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | . initial setup = 5 s
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | . payload setup = 6 s
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | . stage-in = 0 s
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | . payload execution = 7372 s
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | . stage-out = 0 s
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | . log creation = 0 s
[2026-03-14 12:05:46] 2026-03-14 10:39:59,823 | INFO     | ..............................
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | 
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | job summary report
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | --------------------------------------------------
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | PanDA job id: 7051345653
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | task id: 48997968
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | errors: (none)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | pilot state: finished 
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | transexitcode: 0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | exeerrorcode: 0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | exeerrordiag: 
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | exitcode: 0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | exitmsg: OK
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | cpuconsumptiontime: 28332 s
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | nevents: 400
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | neventsw: 0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | pid: 212976
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | pgrp: 212976
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | corecount: 4
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | event service: False
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | sizes: {0: 2279760, 1: 2280277, 11: 2280277, 7383: 2307713, 7385: 2316735, 7387: 2316791, 7388: 2317113}
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | --------------------------------------------------
[2026-03-14 12:05:46] 2026-03-14 10:39:59,854 | INFO     | 
[2026-03-14 12:05:46] 2026-03-14 10:39:59,855 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot240/slots/0
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,867 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 12:05:46] 2026-03-14 10:39:59,868 | INFO     | job 7051345653 has completed (purged errors)
[2026-03-14 12:05:46] 2026-03-14 10:39:59,868 | INFO     | overall cleanup function is called
[2026-03-14 12:05:46] 2026-03-14 10:40:00,874 | INFO     | --- collectZombieJob: --- 10, [212976]
[2026-03-14 12:05:46] 2026-03-14 10:40:00,874 | INFO     | zombie collector waiting for pid 212976
[2026-03-14 12:05:46] 2026-03-14 10:40:00,874 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 12:05:46] 2026-03-14 10:40:00,874 | INFO     | collected zombie processes
[2026-03-14 12:05:46] 2026-03-14 10:40:00,874 | INFO     | will attempt to kill all subprocesses of pid=212976
[2026-03-14 12:05:46] 2026-03-14 10:40:01,148 | INFO     | PID=201273 has CPU usage=17.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 12:05:46] 2026-03-14 10:40:01,149 | INFO     | .. there are 46 such processes running
[2026-03-14 12:05:46] 2026-03-14 10:40:01,539 | INFO     | process IDs to be killed: [212976] (in reverse order)
[2026-03-14 12:05:46] 2026-03-14 10:40:01,778 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 12:05:46] 2026-03-14 10:40:01,779 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 12:05:46] 2026-03-14 10:40:01,810 | INFO     | did not find any defunct processes belonging to 212976
[2026-03-14 12:05:46] 2026-03-14 10:40:01,843 | INFO     | did not find any defunct processes belonging to 212976
[2026-03-14 12:05:46] 2026-03-14 10:40:01,843 | INFO     | ready for new job
[2026-03-14 12:05:46] 2026-03-14 10:40:01,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 12:05:46] 2026-03-14 10:40:01,845 | INFO     | **************************************
[2026-03-14 12:05:46] 2026-03-14 10:40:01,845 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 12:05:46] 2026-03-14 10:40:01,845 | INFO     | **************************************
[2026-03-14 12:05:46] 2026-03-14 10:40:01,845 | INFO     | 
[2026-03-14 12:05:46] 2026-03-14 10:40:01,851 | INFO     | architecture information:
[2026-03-14 12:05:46] 2026-03-14 10:40:01,851 | INFO     | executing command: cat /etc/os-release
[2026-03-14 12:05:46] 2026-03-14 10:40:01,868 | INFO     | cat /etc/os-release:
[2026-03-14 12:05:46] NAME="CentOS Linux"
[2026-03-14 12:05:46] VERSION="7 (Core)"
[2026-03-14 12:05:46] ID="centos"
[2026-03-14 12:05:46] ID_LIKE="rhel fedora"
[2026-03-14 12:05:46] VERSION_ID="7"
[2026-03-14 12:05:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 12:05:46] ANSI_COLOR="0;31"
[2026-03-14 12:05:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 12:05:46] HOME_URL="https://www.centos.org/"
[2026-03-14 12:05:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 12:05:46] 
[2026-03-14 12:05:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 12:05:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 12:05:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 12:05:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 12:05:46] 
[2026-03-14 12:05:46] 2026-03-14 10:40:01,868 | INFO     | **************************************
[2026-03-14 12:05:46] 2026-03-14 10:40:02,371 | INFO     | executing command: df -mP /var/lib/boinc/var/slot240/slots/0
[2026-03-14 12:05:46] 2026-03-14 10:40:02,390 | INFO     | sufficient remaining disk space (21822963712 B)
[2026-03-14 12:05:46] 2026-03-14 10:40:02,390 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 12:05:46] 2026-03-14 10:40:02,391 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 12:05:46] 2026-03-14 10:40:02,391 | INFO     | update_server=False
[2026-03-14 12:05:46] 2026-03-14 10:40:02,391 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 12:05:46] 2026-03-14 10:40:02,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 12:05:46] 2026-03-14 10:40:02,391 | INFO     | aborting loop
[2026-03-14 12:05:46] 2026-03-14 10:40:02,457 | INFO     | all payload control threads have been joined
[2026-03-14 12:05:46] 2026-03-14 10:40:02,851 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 12:05:46] 2026-03-14 10:40:02,853 | INFO     | all job control threads have been joined
[2026-03-14 12:05:46] 2026-03-14 10:40:03,255 | INFO     | all data control threads have been joined
[2026-03-14 12:05:46] 2026-03-14 10:40:03,395 | INFO     | [job] retrieve thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:03,397 | INFO     | [job] job monitor thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:03,463 | INFO     | [payload] control thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:03,494 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:03,612 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:03,613 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:03,738 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:03,858 | INFO     | [job] control thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:03,939 | INFO     | [data] copytool_in thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:04,260 | INFO     | [data] control thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:04,437 | INFO     | [job] validate thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:04,643 | INFO     | [payload] failed_post thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:04,658 | INFO     | [payload] validate_post thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:04,857 | INFO     | [data] copytool_out thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:04,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 12:05:46] 2026-03-14 10:40:05,403 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 12:05:46] 2026-03-14 10:40:05,868 | INFO     | [job] queue monitor thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:09,409 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 12:05:46] 2026-03-14 10:40:33,824 | INFO     | PID=201273 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 12:05:46] 2026-03-14 10:40:33,824 | INFO     | .. there are 47 such processes running
[2026-03-14 12:05:46] 2026-03-14 10:40:33,824 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 12:05:46] 2026-03-14 10:40:33,825 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 12:05:46] 2026-03-14 10:40:33,825 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 12:05:46] 2026-03-14 10:40:53,522 | INFO     | [monitor] cgroup control has ended
[2026-03-14 12:05:46] 2026-03-14 10:40:53,788 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22595235718976)>', '<ExcThread(monitor, started 22594979079936)>']
[2026-03-14 12:05:46] 2026-03-14 10:40:53,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 12:05:46] 2026-03-14 10:40:53,928 | INFO     | [monitor] control thread has ended
[2026-03-14 12:05:46] 2026-03-14 10:40:58,813 | INFO     | all workflow threads have been joined
[2026-03-14 12:05:46] 2026-03-14 10:40:58,814 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 12:05:46] 2026-03-14 10:40:58,814 | INFO     | traces error code: 0
[2026-03-14 12:05:46] 2026-03-14 10:40:58,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 12:05:46] 2026-03-14 10:40:58,941 [wrapper] ==== pilot stdout END ====
[2026-03-14 12:05:46] 2026-03-14 10:40:58,943 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 12:05:46] 2026-03-14 10:40:58,944 [wrapper] pilotpid: 201273
[2026-03-14 12:05:46] 2026-03-14 10:40:58,946 [wrapper] Pilot exit status: 0
[2026-03-14 12:05:46] 2026-03-14 10:40:58,952 [wrapper] pandaids: 7051345653
[2026-03-14 12:05:46] 2026-03-14 10:40:59,089 [wrapper] cleanup supervisor_pilot 1194271 201274
[2026-03-14 12:05:46] 2026-03-14 10:40:59,092 [wrapper] Test setup, not cleaning
[2026-03-14 12:05:46] 2026-03-14 10:40:59,095 [wrapper] apfmon messages muted
[2026-03-14 12:05:46] 2026-03-14 10:40:59,098 [wrapper] ==== wrapper stdout END ====
[2026-03-14 12:05:46] 2026-03-14 10:40:59,100 [wrapper] ==== wrapper stderr END ====
[2026-03-14 12:05:46]  *** Error codes and diagnostics ***
[2026-03-14 12:05:46]     "exeErrorCode": 0,
[2026-03-14 12:05:46]     "exeErrorDiag": "",
[2026-03-14 12:05:46]     "pilotErrorCode": 0,
[2026-03-14 12:05:46]     "pilotErrorDiag": "",
[2026-03-14 12:05:46]  *** Listing of results directory ***
[2026-03-14 12:05:46] total 646348
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc    585013 Mar 12 05:15 pilot3.tar.gz
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc      5111 Mar 12 05:52 queuedata.json
[2026-03-14 12:05:46] -rwx------. 1 boinc boinc     36322 Mar 12 05:52 runpilot2-wrapper.sh
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc       100 Mar 14 09:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 12:05:46] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 09:36 run_atlas
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc       105 Mar 14 09:36 job.xml
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc      6709 Mar 14 09:36 init_data.xml
[2026-03-14 12:05:46] -rw-r--r--. 2 boinc boinc 363406809 Mar 14 09:36 EVNT.48997965._000091.pool.root.1
[2026-03-14 12:05:46] -rw-r--r--. 2 boinc boinc     15845 Mar 14 09:36 start_atlas.sh
[2026-03-14 12:05:46] drwxrwx--x. 2 boinc boinc      4096 Mar 14 09:36 shared
[2026-03-14 12:05:46] -rw-r--r--. 2 boinc boinc    597536 Mar 14 09:36 input.tar.gz
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc         0 Mar 14 09:36 boinc_lockfile
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc      2565 Mar 14 09:36 pandaJob.out
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc   1004579 Mar 14 09:36 agis_schedconf.cvmfs.json
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc   1511579 Mar 14 09:36 agis_ddmendpoints.agis.ALL.json
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc       445 Mar 14 09:36 workernode_map.json
[2026-03-14 12:05:46] drwx------. 5 boinc boinc      4096 Mar 14 09:36 pilot3
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc 291746364 Mar 14 11:39 HITS.48997968._002353.pool.root.1
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc       529 Mar 14 11:39 boinc_task_state.xml
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc        95 Mar 14 11:39 pilot_heartbeat.json
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc      1031 Mar 14 11:39 memory_monitor_summary.json
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc    323343 Mar 14 11:39 log.48997968._002353.job.log.tgz.1
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc      6353 Mar 14 11:39 heartbeat.json
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc      4829 Mar 14 11:40 pilotlog.txt
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc   1057663 Mar 14 11:40 log.48997968._002353.job.log.1
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc       357 Mar 14 11:40 output.list
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc       620 Mar 14 11:40 runtime_log
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc   1402880 Mar 14 11:40 result.tar.gz
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc      9221 Mar 14 11:40 runtime_log.err
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc       663 Mar 14 11:40 CgXKDmhDnK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDme7lLDmm1G4km.diag
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc        27 Mar 14 12:05 wrapper_checkpoint.txt
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc      8192 Mar 14 12:05 boinc_mmap_file
[2026-03-14 12:05:46] -rw-r--r--. 1 boinc boinc     20994 Mar 14 12:05 stderr.txt
[2026-03-14 12:05:46] HITS file was successfully produced:
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc 291746364 Mar 14 11:39 shared/HITS.pool.root.1
[2026-03-14 12:05:46]  *** Contents of shared directory: ***
[2026-03-14 12:05:46] total 641784
[2026-03-14 12:05:46] -rw-r--r--. 2 boinc boinc 363406809 Mar 14 09:36 ATLAS.root_0
[2026-03-14 12:05:46] -rw-r--r--. 2 boinc boinc     15845 Mar 14 09:36 start_atlas.sh
[2026-03-14 12:05:46] -rw-r--r--. 2 boinc boinc    597536 Mar 14 09:36 input.tar.gz
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc 291746364 Mar 14 11:39 HITS.pool.root.1
[2026-03-14 12:05:46] -rw-------. 1 boinc boinc   1402880 Mar 14 11:40 result.tar.gz
12:05:47 (194068): run_atlas exited; CPU time 28690.118096
12:05:47 (194068): called boinc_finish(0)

</stderr_txt>
]]>

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