Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
01:02:00 (693203): wrapper (7.7.26015): starting
01:02:00 (693203): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 01:02:00] Arguments: --nthreads 4
[2026-03-12 01:02:00] Threads: 4
[2026-03-12 01:02:00] Checking for CVMFS
[2026-03-12 01:02:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 01:02:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 01:02:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 01:02:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 01:02:01] 2.13.3.0 1437033 8337 53052 157183 3 50 3740954 4096000 2748 130560 0 5945919 99.990 293440 954 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-12 01:02:01] CVMFS is ok
[2026-03-12 01:02:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 01:02:01] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-12 01:02:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-12 01:02:01] Further information can be found at the LHC@home message board.
[2026-03-12 01:02:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 01:02:01] Checking for apptainer binary...
[2026-03-12 01:02:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 01:02:01] Running /usr/bin/apptainer --version
[2026-03-12 01:02:01] apptainer version 1.4.5
[2026-03-12 01:02:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 01:02:01] T5810-Ubuntu
[2026-03-12 01:02:01] apptainer works
[2026-03-12 01:02:01] Set ATHENA_PROC_NUMBER=4
[2026-03-12 01:02:01] Set ATHENA_CORE_NUMBER=4
[2026-03-12 01:02:01] Starting ATLAS job with PandaID=7049313034
[2026-03-12 01:02:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 05:24:50]  *** The last 200 lines of the pilot log: ***
[2026-03-12 05:24:50] 2026-03-12 09:23:56,849 | INFO     | job 7049313034 has state=finished
[2026-03-12 05:24:50] 2026-03-12 09:23:56,849 | INFO     | preparing for final server update for job 7049313034 in state='finished'
[2026-03-12 05:24:50] 2026-03-12 09:23:56,850 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/21/PanDA_Pilot-7049313034/jobReport.json
[2026-03-12 05:24:50] 2026-03-12 09:23:56,852 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/21/workernode_map.json
[2026-03-12 05:24:50] 2026-03-12 09:23:56,853 | INFO     | this job has now completed (state=finished)
[2026-03-12 05:24:50] 2026-03-12 09:23:56,853 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 05:24:50] 2026-03-12 09:23:56,853 | INFO     | log transfer has been attempted: DONE
[2026-03-12 05:24:50] 2026-03-12 09:23:56,853 | INFO     | job 7049313034 has finished - writing final server update
[2026-03-12 05:24:50] 2026-03-12 09:23:56,853 | INFO     | total number of processed events: 400 (read)
[2026-03-12 05:24:50] 2026-03-12 09:23:56,861 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/21/PanDA_Pilot-7049313034/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 05:24:50] 2026-03-12 09:23:56,862 | INFO     | extracted standard info from prmon json
[2026-03-12 05:24:50] 2026-03-12 09:23:56,862 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 05:24:50] 2026-03-12 09:23:56,862 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 05:24:50] 2026-03-12 09:23:56,862 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 05:24:50] 2026-03-12 09:23:56,863 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 05:24:50] 2026-03-12 09:23:56,867 | INFO     | fitting pss+swap vs Time
[2026-03-12 05:24:50] 2026-03-12 09:23:56,868 | INFO     | sum of square deviations: 5263458688.0
[2026-03-12 05:24:50] 2026-03-12 09:23:56,870 | INFO     | sum of deviations: 20765377403.000008
[2026-03-12 05:24:50] 2026-03-12 09:23:56,870 | INFO     | mean x: 1773299559.0
[2026-03-12 05:24:50] 2026-03-12 09:23:56,870 | INFO     | mean y: 2310149.4824902723
[2026-03-12 05:24:50] 2026-03-12 09:23:56,871 | INFO     | intersect: -6993704595.56731
[2026-03-12 05:24:50] 2026-03-12 09:23:56,871 | INFO     | chi2: 1.3008002748371292
[2026-03-12 05:24:50] 2026-03-12 09:23:56,872 | INFO     | sum of square deviations: 4962187923.0
[2026-03-12 05:24:50] 2026-03-12 09:23:56,874 | INFO     | sum of deviations: 19920123522.000008
[2026-03-12 05:24:50] 2026-03-12 09:23:56,874 | INFO     | mean x: 1773299406.5
[2026-03-12 05:24:50] 2026-03-12 09:23:56,874 | INFO     | mean y: 2309720.492063492
[2026-03-12 05:24:50] 2026-03-12 09:23:56,874 | INFO     | intersect: -7116393514.272409
[2026-03-12 05:24:50] 2026-03-12 09:23:56,874 | INFO     | chi2: 1.301077572792282
[2026-03-12 05:24:50] 2026-03-12 09:23:56,875 | INFO     | current chi2=1.301077572792282 (change=-0.021317488973284185 %)
[2026-03-12 05:24:50] 2026-03-12 09:23:56,875 | INFO     | right removable region: 251
[2026-03-12 05:24:50] 2026-03-12 09:23:56,875 | INFO     | sum of square deviations: 4962187923.0
[2026-03-12 05:24:50] 2026-03-12 09:23:56,877 | INFO     | sum of deviations: -6702633213.0
[2026-03-12 05:24:50] 2026-03-12 09:23:56,877 | INFO     | mean x: 1773299711.5
[2026-03-12 05:24:50] 2026-03-12 09:23:56,878 | INFO     | mean y: 2323875.8333333335
[2026-03-12 05:24:50] 2026-03-12 09:23:56,878 | INFO     | intersect: 2397593407.6082225
[2026-03-12 05:24:50] 2026-03-12 09:23:56,878 | INFO     | chi2: 0.06225648277013511
[2026-03-12 05:24:50] 2026-03-12 09:23:56,878 | INFO     | current chi2=0.06225648277013511 (change=95.21398603810027 %)
[2026-03-12 05:24:50] 2026-03-12 09:23:56,879 | INFO     | sum of square deviations: 4672638308.0
[2026-03-12 05:24:50] 2026-03-12 09:23:56,881 | INFO     | sum of deviations: -3165152444.9999986
[2026-03-12 05:24:50] 2026-03-12 09:23:56,881 | INFO     | mean x: 1773299864.0
[2026-03-12 05:24:50] 2026-03-12 09:23:56,881 | INFO     | mean y: 2321999.5303643723
[2026-03-12 05:24:50] 2026-03-12 09:23:56,881 | INFO     | intersect: 1203520130.0700595
[2026-03-12 05:24:50] 2026-03-12 09:23:56,882 | INFO     | chi2: 0.05196310316197604
[2026-03-12 05:24:50] 2026-03-12 09:23:56,882 | INFO     | current chi2=0.05196310316197604 (change=16.53382772387662 %)
[2026-03-12 05:24:50] 2026-03-12 09:23:56,882 | INFO     | left removable region: 20
[2026-03-12 05:24:50] 2026-03-12 09:23:56,882 | INFO     | sum of square deviations: 3822136780.0
[2026-03-12 05:24:50] 2026-03-12 09:23:56,884 | INFO     | sum of deviations: 7461431245.000006
[2026-03-12 05:24:50] 2026-03-12 09:23:56,884 | INFO     | mean x: 1773299986.0
[2026-03-12 05:24:50] 2026-03-12 09:23:56,884 | INFO     | mean y: 2315218.3593073594
[2026-03-12 05:24:50] 2026-03-12 09:23:56,884 | INFO     | intersect: -3459454122.689359
[2026-03-12 05:24:50] 2026-03-12 09:23:56,885 | INFO     | chi2: 0.00043549857804423946
[2026-03-12 05:24:50] 2026-03-12 09:23:56,885 | INFO     | current memory leak: 1.95 B/s (using 231 data points, chi2=0.00)
[2026-03-12 05:24:50] 2026-03-12 09:23:56,886 | INFO     | could have reported an average CPU frequency of 2574 MHz (12 samples)
[2026-03-12 05:24:50] 2026-03-12 09:23:56,886 | INFO     | ..............................
[2026-03-12 05:24:50] 2026-03-12 09:23:56,886 | INFO     | . Timing measurements:
[2026-03-12 05:24:50] 2026-03-12 09:23:56,886 | INFO     | . get job = 0 s
[2026-03-12 05:24:50] 2026-03-12 09:23:56,886 | INFO     | . initial setup = 7 s
[2026-03-12 05:24:50] 2026-03-12 09:23:56,886 | INFO     | . payload setup = 5 s
[2026-03-12 05:24:50] 2026-03-12 09:23:56,886 | INFO     | . stage-in = 0 s
[2026-03-12 05:24:50] 2026-03-12 09:23:56,887 | INFO     | . payload execution = 15679 s
[2026-03-12 05:24:50] 2026-03-12 09:23:56,887 | INFO     | . stage-out = 3 s
[2026-03-12 05:24:50] 2026-03-12 09:23:56,887 | INFO     | . log creation = 0 s
[2026-03-12 05:24:50] 2026-03-12 09:23:56,887 | INFO     | ..............................
[2026-03-12 05:24:50] 2026-03-12 09:23:57,438 | INFO     | 
[2026-03-12 05:24:50] 2026-03-12 09:23:57,439 | INFO     | job summary report
[2026-03-12 05:24:50] 2026-03-12 09:23:57,439 | INFO     | --------------------------------------------------
[2026-03-12 05:24:50] 2026-03-12 09:23:57,439 | INFO     | PanDA job id: 7049313034
[2026-03-12 05:24:50] 2026-03-12 09:23:57,439 | INFO     | task id: 48967085
[2026-03-12 05:24:50] 2026-03-12 09:23:57,439 | INFO     | errors: (none)
[2026-03-12 05:24:50] 2026-03-12 09:23:57,439 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 05:24:50] 2026-03-12 09:23:57,439 | INFO     | pilot state: finished 
[2026-03-12 05:24:50] 2026-03-12 09:23:57,439 | INFO     | transexitcode: 0
[2026-03-12 05:24:50] 2026-03-12 09:23:57,440 | INFO     | exeerrorcode: 0
[2026-03-12 05:24:50] 2026-03-12 09:23:57,440 | INFO     | exeerrordiag: 
[2026-03-12 05:24:50] 2026-03-12 09:23:57,440 | INFO     | exitcode: 0
[2026-03-12 05:24:50] 2026-03-12 09:23:57,440 | INFO     | exitmsg: OK
[2026-03-12 05:24:50] 2026-03-12 09:23:57,440 | INFO     | cpuconsumptiontime: 61240 s
[2026-03-12 05:24:50] 2026-03-12 09:23:57,440 | INFO     | nevents: 400
[2026-03-12 05:24:50] 2026-03-12 09:23:57,440 | INFO     | neventsw: 0
[2026-03-12 05:24:50] 2026-03-12 09:23:57,440 | INFO     | pid: 702121
[2026-03-12 05:24:50] 2026-03-12 09:23:57,440 | INFO     | pgrp: 702121
[2026-03-12 05:24:50] 2026-03-12 09:23:57,440 | INFO     | corecount: 4
[2026-03-12 05:24:50] 2026-03-12 09:23:57,441 | INFO     | event service: False
[2026-03-12 05:24:50] 2026-03-12 09:23:57,441 | INFO     | sizes: {0: 2280193, 1: 2280281, 15689: 2311604, 15693: 2320632, 15696: 2320882}
[2026-03-12 05:24:50] 2026-03-12 09:23:57,441 | INFO     | --------------------------------------------------
[2026-03-12 05:24:50] 2026-03-12 09:23:57,441 | INFO     | 
[2026-03-12 05:24:50] 2026-03-12 09:23:57,441 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/21
[2026-03-12 05:24:50] 2026-03-12 09:23:57,473 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,473 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,473 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,474 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,474 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,474 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,474 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,474 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,474 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,474 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,474 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,474 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,475 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 05:24:50] 2026-03-12 09:23:57,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,475 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 05:24:50] 2026-03-12 09:23:57,475 | INFO     | job 7049313034 has completed (purged errors)
[2026-03-12 05:24:50] 2026-03-12 09:23:57,476 | INFO     | overall cleanup function is called
[2026-03-12 05:24:50] 2026-03-12 09:23:58,483 | INFO     | --- collectZombieJob: --- 10, [702121]
[2026-03-12 05:24:50] 2026-03-12 09:23:58,483 | INFO     | zombie collector waiting for pid 702121
[2026-03-12 05:24:50] 2026-03-12 09:23:58,483 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 05:24:50] 2026-03-12 09:23:58,483 | INFO     | collected zombie processes
[2026-03-12 05:24:50] 2026-03-12 09:23:58,483 | INFO     | will attempt to kill all subprocesses of pid=702121
[2026-03-12 05:24:50] 2026-03-12 09:23:58,733 | INFO     | process IDs to be killed: [702121] (in reverse order)
[2026-03-12 05:24:50] 2026-03-12 09:23:58,811 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 05:24:50] 2026-03-12 09:23:58,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 05:24:50] 2026-03-12 09:23:58,818 | INFO     | did not find any defunct processes belonging to 702121
[2026-03-12 05:24:50] 2026-03-12 09:23:58,823 | INFO     | did not find any defunct processes belonging to 702121
[2026-03-12 05:24:50] 2026-03-12 09:23:58,823 | INFO     | ready for new job
[2026-03-12 05:24:50] 2026-03-12 09:23:58,823 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 05:24:50] 2026-03-12 09:23:58,826 | INFO     | **************************************
[2026-03-12 05:24:50] 2026-03-12 09:23:58,826 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 05:24:50] 2026-03-12 09:23:58,826 | INFO     | **************************************
[2026-03-12 05:24:50] 2026-03-12 09:23:58,826 | INFO     | 
[2026-03-12 05:24:50] 2026-03-12 09:23:58,829 | INFO     | architecture information:
[2026-03-12 05:24:50] 2026-03-12 09:23:58,829 | INFO     | executing command: cat /etc/os-release
[2026-03-12 05:24:50] 2026-03-12 09:23:58,847 | INFO     | cat /etc/os-release:
[2026-03-12 05:24:50] NAME="CentOS Linux"
[2026-03-12 05:24:50] VERSION="7 (Core)"
[2026-03-12 05:24:50] ID="centos"
[2026-03-12 05:24:50] ID_LIKE="rhel fedora"
[2026-03-12 05:24:50] VERSION_ID="7"
[2026-03-12 05:24:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 05:24:50] ANSI_COLOR="0;31"
[2026-03-12 05:24:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 05:24:50] HOME_URL="https://www.centos.org/"
[2026-03-12 05:24:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 05:24:50] 
[2026-03-12 05:24:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 05:24:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 05:24:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 05:24:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 05:24:50] 
[2026-03-12 05:24:50] 2026-03-12 09:23:58,847 | INFO     | **************************************
[2026-03-12 05:24:50] 2026-03-12 09:23:59,350 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/21
[2026-03-12 05:24:50] 2026-03-12 09:23:59,371 | INFO     | sufficient remaining disk space (405909012480 B)
[2026-03-12 05:24:50] 2026-03-12 09:23:59,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 05:24:50] 2026-03-12 09:23:59,372 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 05:24:50] 2026-03-12 09:23:59,372 | INFO     | update_server=False
[2026-03-12 05:24:50] 2026-03-12 09:23:59,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 05:24:50] 2026-03-12 09:23:59,690 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 05:24:50] 2026-03-12 09:23:59,690 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 05:24:50] 2026-03-12 09:23:59,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 05:24:50] 2026-03-12 09:23:59,690 | INFO     | will abort loop
[2026-03-12 05:24:50] 2026-03-12 09:24:00,219 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 05:24:50] 2026-03-12 09:24:00,287 | INFO     | all data control threads have been joined
[2026-03-12 05:24:50] 2026-03-12 09:24:00,377 | INFO     | [job] retrieve thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:00,474 | INFO     | all payload control threads have been joined
[2026-03-12 05:24:50] 2026-03-12 09:24:00,499 | INFO     | all job control threads have been joined
[2026-03-12 05:24:50] 2026-03-12 09:24:00,695 | INFO     | [job] job monitor thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:00,853 | INFO     | [data] copytool_in thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:00,853 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:00,965 | INFO     | [payload] validate_post thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:00,988 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:01,292 | INFO     | [data] control thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:01,468 | INFO     | [payload] failed_post thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:01,479 | INFO     | [payload] control thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:01,504 | INFO     | [job] control thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:01,612 | INFO     | [job] validate thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:01,729 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:01,766 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:01,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 05:24:50] 2026-03-12 09:24:02,224 | INFO     | [data] copytool_out thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:02,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 05:24:50] 2026-03-12 09:24:03,004 | INFO     | [job] queue monitor thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:06,865 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 05:24:50] 2026-03-12 09:24:29,579 | INFO     | PID=697454 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 05:24:50] 2026-03-12 09:24:29,579 | INFO     | .. there are 4 such processes running
[2026-03-12 05:24:50] 2026-03-12 09:24:29,580 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 05:24:50] 2026-03-12 09:24:29,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 05:24:50] 2026-03-12 09:24:29,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 05:24:50] 2026-03-12 09:24:44,438 | INFO     | [monitor] cgroup control has ended
[2026-03-12 05:24:50] 2026-03-12 09:24:45,262 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138543907460928)>', '<ExcThread(monitor, started 138543280150272)>']
[2026-03-12 05:24:50] 2026-03-12 09:24:45,659 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 05:24:50] 2026-03-12 09:24:45,659 | INFO     | [monitor] control thread has ended
[2026-03-12 05:24:50] 2026-03-12 09:24:50,287 | INFO     | all workflow threads have been joined
[2026-03-12 05:24:50] 2026-03-12 09:24:50,287 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 05:24:50] 2026-03-12 09:24:50,287 | INFO     | traces error code: 0
[2026-03-12 05:24:50] 2026-03-12 09:24:50,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 05:24:50] 2026-03-12 09:24:50,411 [wrapper] ==== pilot stdout END ====
[2026-03-12 05:24:50] 2026-03-12 09:24:50,414 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 05:24:50] 2026-03-12 09:24:50,416 [wrapper] pilotpid: 697454
[2026-03-12 05:24:50] 2026-03-12 09:24:50,420 [wrapper] Pilot exit status: 0
[2026-03-12 05:24:50] 2026-03-12 09:24:50,434 [wrapper] pandaids: 7049313034
[2026-03-12 05:24:50] 2026-03-12 09:24:50,478 [wrapper] cleanup supervisor_pilot  807970 697455
[2026-03-12 05:24:50] 2026-03-12 09:24:50,483 [wrapper] Test setup, not cleaning
[2026-03-12 05:24:50] 2026-03-12 09:24:50,488 [wrapper] apfmon messages muted
[2026-03-12 05:24:50] 2026-03-12 09:24:50,490 [wrapper] ==== wrapper stdout END ====
[2026-03-12 05:24:50] 2026-03-12 09:24:50,496 [wrapper] ==== wrapper stderr END ====
[2026-03-12 05:24:50]  *** Error codes and diagnostics ***
[2026-03-12 05:24:50]     "exeErrorCode": 0,
[2026-03-12 05:24:50]     "exeErrorDiag": "",
[2026-03-12 05:24:50]     "pilotErrorCode": 0,
[2026-03-12 05:24:50]     "pilotErrorDiag": "",
[2026-03-12 05:24:50]  *** Listing of results directory ***
[2026-03-12 05:24:50] total 413088
[2026-03-12 05:24:50] -rw-r--r-- 1 whitlerd whitlerd    585013 Mar 10 21:23 pilot3.tar.gz
[2026-03-12 05:24:50] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar 10 21:24 queuedata.json
[2026-03-12 05:24:50] -rwx------ 1 whitlerd whitlerd     36322 Mar 10 21:25 runpilot2-wrapper.sh
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar 12 01:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 05:24:50] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar 12 01:02 run_atlas
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar 12 01:02 job.xml
[2026-03-12 05:24:50] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 12 01:02 start_atlas.sh
[2026-03-12 05:24:50] drwxrwx--x 2 whitlerd whitlerd      4096 Mar 12 01:02 shared
[2026-03-12 05:24:50] -rw-r--r-- 2 whitlerd whitlerd    597518 Mar 12 01:02 input.tar.gz
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd      9087 Mar 12 01:02 init_data.xml
[2026-03-12 05:24:50] -rw-r--r-- 2 whitlerd whitlerd 212419495 Mar 12 01:02 EVNT.48967083._000168.pool.root.1
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 12 01:02 boinc_setup_complete
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 12 01:02 boinc_lockfile
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd      2561 Mar 12 01:02 pandaJob.out
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd   1006235 Mar 12 01:02 agis_schedconf.cvmfs.json
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd       426 Mar 12 01:02 workernode_map.json
[2026-03-12 05:24:50] drwx------ 5 whitlerd whitlerd      4096 Mar 12 01:02 pilot3
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd 201323564 Mar 12 05:23 HITS.48967085._004179.pool.root.1
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd       530 Mar 12 05:23 boinc_task_state.xml
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd      1028 Mar 12 05:23 memory_monitor_summary.json
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd   1511578 Mar 12 05:23 agis_ddmendpoints.agis.ALL.json
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd    413378 Mar 12 05:23 log.48967085._004179.job.log.tgz.1
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd      6328 Mar 12 05:23 heartbeat.json
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd        95 Mar 12 05:24 pilot_heartbeat.json
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar 12 05:24 wrapper_checkpoint.txt
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar 12 05:24 boinc_mmap_file
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd      5020 Mar 12 05:24 pilotlog.txt
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd   2244793 Mar 12 05:24 log.48967085._004179.job.log.1
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd       357 Mar 12 05:24 output.list
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar 12 05:24 runtime_log
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd   2672640 Mar 12 05:24 result.tar.gz
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd       649 Mar 12 05:24 zdVKDm7UNK9n9Rq4apOajLDm4fhM0noT9bVooX4SDm40eLDmtZRD8m.diag
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd      9036 Mar 12 05:24 runtime_log.err
[2026-03-12 05:24:50] -rw-rw-r-- 1 whitlerd whitlerd     21364 Mar 12 05:24 stderr.txt
[2026-03-12 05:24:50] HITS file was successfully produced:
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd 201323564 Mar 12 05:23 shared/HITS.pool.root.1
[2026-03-12 05:24:50]  *** Contents of shared directory: ***
[2026-03-12 05:24:50] total 407272
[2026-03-12 05:24:50] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 12 01:02 start_atlas.sh
[2026-03-12 05:24:50] -rw-r--r-- 2 whitlerd whitlerd    597518 Mar 12 01:02 input.tar.gz
[2026-03-12 05:24:50] -rw-r--r-- 2 whitlerd whitlerd 212419495 Mar 12 01:02 ATLAS.root_0
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd 201323564 Mar 12 05:23 HITS.pool.root.1
[2026-03-12 05:24:50] -rw------- 1 whitlerd whitlerd   2672640 Mar 12 05:24 result.tar.gz
05:24:52 (693203): run_atlas exited; CPU time 61739.615111
05:24:52 (693203): called boinc_finish(0)

</stderr_txt>
]]>

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