Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:40:10 (3599817): wrapper (7.7.26015): starting
12:40:10 (3599817): wrapper: running run_atlas (--nthreads 4)
[2026-03-13 12:40:10] Arguments: --nthreads 4
[2026-03-13 12:40:10] Threads: 4
[2026-03-13 12:40:10] Checking for CVMFS
[2026-03-13 12:40:10] No cvmfs_config command found, will try listing directly
[2026-03-13 12:40:10] CVMFS is ok
[2026-03-13 12:40:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 12:40:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 12:40:10] Further information can be found at the LHC@home message board.
[2026-03-13 12:40:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 12:40:10] Checking for apptainer binary...
[2026-03-13 12:40:10] which: no apptainer in ((null))
[2026-03-13 12:40:10] apptainer is not installed, using version from CVMFS
[2026-03-13 12:40:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 12:40:12] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-03-13 12:40:12] apptainer works
[2026-03-13 12:40:12] Set ATHENA_PROC_NUMBER=4
[2026-03-13 12:40:12] Set ATHENA_CORE_NUMBER=4
[2026-03-13 12:40:12] Starting ATLAS job with PandaID=7050440976
[2026-03-13 12:40:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 16:55:12]  *** The last 200 lines of the pilot log: ***
[2026-03-13 16:55:12] 2026-03-13 15:54:07,285 | INFO     | reading metadata from: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7050440976/jobReport.json
[2026-03-13 16:55:12] 2026-03-13 15:54:07,287 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot52/slots/0/workernode_map.json
[2026-03-13 16:55:12] 2026-03-13 15:54:07,288 | INFO     | this job has now completed (state=finished)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,288 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,288 | INFO     | log transfer has been attempted: DONE
[2026-03-13 16:55:12] 2026-03-13 15:54:07,288 | INFO     | job 7050440976 has finished - writing final server update
[2026-03-13 16:55:12] 2026-03-13 15:54:07,289 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_571112/.job.ad'
[2026-03-13 16:55:12] 2026-03-13 15:54:07,289 | INFO     | total number of processed events: 400 (read)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,304 | INFO     | using path: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7050440976/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,305 | INFO     | extracted standard info from prmon json
[2026-03-13 16:55:12] 2026-03-13 15:54:07,305 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 16:55:12] 2026-03-13 15:54:07,305 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 16:55:12] 2026-03-13 15:54:07,306 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 16:55:12] 2026-03-13 15:54:07,306 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 16:55:12] 2026-03-13 15:54:07,310 | INFO     | fitting pss+swap vs Time
[2026-03-13 16:55:12] 2026-03-13 15:54:07,311 | INFO     | sum of square deviations: 4729621702.0
[2026-03-13 16:55:12] 2026-03-13 15:54:07,313 | INFO     | sum of deviations: -12576690219.500004
[2026-03-13 16:55:12] 2026-03-13 15:54:07,313 | INFO     | mean x: 1773409673.5
[2026-03-13 16:55:12] 2026-03-13 15:54:07,313 | INFO     | mean y: 2342509.6733870967
[2026-03-13 16:55:12] 2026-03-13 15:54:07,313 | INFO     | intersect: 4718073597.9426
[2026-03-13 16:55:12] 2026-03-13 15:54:07,314 | INFO     | chi2: 1.621284092117061
[2026-03-13 16:55:12] 2026-03-13 15:54:07,314 | INFO     | sum of square deviations: 4449281562.0
[2026-03-13 16:55:12] 2026-03-13 15:54:07,316 | INFO     | sum of deviations: -12782570861.999998
[2026-03-13 16:55:12] 2026-03-13 15:54:07,316 | INFO     | mean x: 1773409521.0
[2026-03-13 16:55:12] 2026-03-13 15:54:07,317 | INFO     | mean y: 2342401.1522633745
[2026-03-13 16:55:12] 2026-03-13 15:54:07,317 | INFO     | intersect: 5097262233.408988
[2026-03-13 16:55:12] 2026-03-13 15:54:07,318 | INFO     | chi2: 1.6188658504066267
[2026-03-13 16:55:12] 2026-03-13 15:54:07,318 | INFO     | current chi2=1.6188658504066267 (change=0.1491559512729594 %)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,318 | INFO     | right removable region: 242
[2026-03-13 16:55:12] 2026-03-13 15:54:07,318 | INFO     | sum of square deviations: 4449281562.0
[2026-03-13 16:55:12] 2026-03-13 15:54:07,320 | INFO     | sum of deviations: -39177659676.00001
[2026-03-13 16:55:12] 2026-03-13 15:54:07,320 | INFO     | mean x: 1773409826.0
[2026-03-13 16:55:12] 2026-03-13 15:54:07,320 | INFO     | mean y: 2356778.0329218106
[2026-03-13 16:55:12] 2026-03-13 15:54:07,321 | INFO     | intersect: 15617922046.478477
[2026-03-13 16:55:12] 2026-03-13 15:54:07,321 | INFO     | chi2: 0.3354871949888269
[2026-03-13 16:55:12] 2026-03-13 15:54:07,321 | INFO     | current chi2=0.3354871949888269 (change=79.30731593432523 %)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,322 | INFO     | sum of square deviations: 4180243959.5
[2026-03-13 16:55:12] 2026-03-13 15:54:07,323 | INFO     | sum of deviations: -28219804292.5
[2026-03-13 16:55:12] 2026-03-13 15:54:07,329 | INFO     | mean x: 1773409978.5
[2026-03-13 16:55:12] 2026-03-13 15:54:07,330 | INFO     | mean y: 2350555.180672269
[2026-03-13 16:55:12] 2026-03-13 15:54:07,330 | INFO     | intersect: 11974207463.173803
[2026-03-13 16:55:12] 2026-03-13 15:54:07,330 | INFO     | chi2: 0.2857977799761628
[2026-03-13 16:55:12] 2026-03-13 15:54:07,330 | INFO     | current chi2=0.2857977799761628 (change=14.81112118580829 %)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,330 | INFO     | left removable region: 20
[2026-03-13 16:55:12] 2026-03-13 15:54:07,331 | INFO     | sum of square deviations: 3392567795.5
[2026-03-13 16:55:12] 2026-03-13 15:54:07,332 | INFO     | sum of deviations: -2845191066.499999
[2026-03-13 16:55:12] 2026-03-13 15:54:07,332 | INFO     | mean x: 1773410100.5
[2026-03-13 16:55:12] 2026-03-13 15:54:07,332 | INFO     | mean y: 2334629.8873873875
[2026-03-13 16:55:12] 2026-03-13 15:54:07,332 | INFO     | intersect: 1489612373.275807
[2026-03-13 16:55:12] 2026-03-13 15:54:07,333 | INFO     | chi2: 0.0901081871284443
[2026-03-13 16:55:12] 2026-03-13 15:54:07,333 | INFO     | current memory leak: -0.84 B/s (using 222 data points, chi2=0.09)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,334 | INFO     | could have reported an average CPU frequency of 2519 MHz (12 samples)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,334 | INFO     | ..............................
[2026-03-13 16:55:12] 2026-03-13 15:54:07,334 | INFO     | . Timing measurements:
[2026-03-13 16:55:12] 2026-03-13 15:54:07,334 | INFO     | . get job = 0 s
[2026-03-13 16:55:12] 2026-03-13 15:54:07,334 | INFO     | . initial setup = 23 s
[2026-03-13 16:55:12] 2026-03-13 15:54:07,334 | INFO     | . payload setup = 26 s
[2026-03-13 16:55:12] 2026-03-13 15:54:07,334 | INFO     | . stage-in = 0 s
[2026-03-13 16:55:12] 2026-03-13 15:54:07,335 | INFO     | . payload execution = 15129 s
[2026-03-13 16:55:12] 2026-03-13 15:54:07,335 | INFO     | . stage-out = 1 s
[2026-03-13 16:55:12] 2026-03-13 15:54:07,335 | INFO     | . log creation = 0 s
[2026-03-13 16:55:12] 2026-03-13 15:54:07,335 | INFO     | ..............................
[2026-03-13 16:55:12] 2026-03-13 15:54:07,433 | INFO     | 
[2026-03-13 16:55:12] 2026-03-13 15:54:07,433 | INFO     | job summary report
[2026-03-13 16:55:12] 2026-03-13 15:54:07,434 | INFO     | --------------------------------------------------
[2026-03-13 16:55:12] 2026-03-13 15:54:07,434 | INFO     | PanDA job id: 7050440976
[2026-03-13 16:55:12] 2026-03-13 15:54:07,434 | INFO     | task id: 48967094
[2026-03-13 16:55:12] 2026-03-13 15:54:07,434 | INFO     | errors: (none)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,434 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 16:55:12] 2026-03-13 15:54:07,434 | INFO     | pilot state: finished 
[2026-03-13 16:55:12] 2026-03-13 15:54:07,434 | INFO     | transexitcode: 0
[2026-03-13 16:55:12] 2026-03-13 15:54:07,434 | INFO     | exeerrorcode: 0
[2026-03-13 16:55:12] 2026-03-13 15:54:07,434 | INFO     | exeerrordiag: 
[2026-03-13 16:55:12] 2026-03-13 15:54:07,434 | INFO     | exitcode: 0
[2026-03-13 16:55:12] 2026-03-13 15:54:07,435 | INFO     | exitmsg: OK
[2026-03-13 16:55:12] 2026-03-13 15:54:07,435 | INFO     | cpuconsumptiontime: 56545 s
[2026-03-13 16:55:12] 2026-03-13 15:54:07,435 | INFO     | nevents: 400
[2026-03-13 16:55:12] 2026-03-13 15:54:07,435 | INFO     | neventsw: 0
[2026-03-13 16:55:12] 2026-03-13 15:54:07,435 | INFO     | pid: 3609097
[2026-03-13 16:55:12] 2026-03-13 15:54:07,435 | INFO     | pgrp: 3609097
[2026-03-13 16:55:12] 2026-03-13 15:54:07,435 | INFO     | corecount: 4
[2026-03-13 16:55:12] 2026-03-13 15:54:07,435 | INFO     | event service: False
[2026-03-13 16:55:12] 2026-03-13 15:54:07,435 | INFO     | sizes: {0: 2279134, 1: 2280263, 2: 2280263, 15158: 2311460, 15160: 2320536, 15161: 2320674}
[2026-03-13 16:55:12] 2026-03-13 15:54:07,435 | INFO     | --------------------------------------------------
[2026-03-13 16:55:12] 2026-03-13 15:54:07,436 | INFO     | 
[2026-03-13 16:55:12] 2026-03-13 15:54:07,436 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/0
[2026-03-13 16:55:12] 2026-03-13 15:54:07,458 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,459 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,459 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,459 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,459 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,459 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,460 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,460 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,460 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,460 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,460 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,460 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,460 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,460 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,460 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,460 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,461 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,461 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,461 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,461 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 16:55:12] 2026-03-13 15:54:07,461 | INFO     | job 7050440976 has completed (purged errors)
[2026-03-13 16:55:12] 2026-03-13 15:54:07,461 | INFO     | overall cleanup function is called
[2026-03-13 16:55:12] 2026-03-13 15:54:07,488 | INFO     | PID=3604117 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-13 16:55:12] 2026-03-13 15:54:07,488 | INFO     | .. there are 12 such processes running
[2026-03-13 16:55:12] 2026-03-13 15:54:08,470 | INFO     | --- collectZombieJob: --- 10, [3609097]
[2026-03-13 16:55:12] 2026-03-13 15:54:08,470 | INFO     | zombie collector waiting for pid 3609097
[2026-03-13 16:55:12] 2026-03-13 15:54:08,470 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 16:55:12] 2026-03-13 15:54:08,470 | INFO     | collected zombie processes
[2026-03-13 16:55:12] 2026-03-13 15:54:08,470 | INFO     | will attempt to kill all subprocesses of pid=3609097
[2026-03-13 16:55:12] 2026-03-13 15:54:08,868 | INFO     | process IDs to be killed: [3609097] (in reverse order)
[2026-03-13 16:55:12] 2026-03-13 15:54:09,008 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 16:55:12] 2026-03-13 15:54:09,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 16:55:12] 2026-03-13 15:54:09,021 | INFO     | did not find any defunct processes belonging to 3609097
[2026-03-13 16:55:12] 2026-03-13 15:54:09,032 | INFO     | did not find any defunct processes belonging to 3609097
[2026-03-13 16:55:12] 2026-03-13 15:54:09,033 | INFO     | ready for new job
[2026-03-13 16:55:12] 2026-03-13 15:54:09,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 16:55:12] 2026-03-13 15:54:09,035 | INFO     | **************************************
[2026-03-13 16:55:12] 2026-03-13 15:54:09,035 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 16:55:12] 2026-03-13 15:54:09,035 | INFO     | **************************************
[2026-03-13 16:55:12] 2026-03-13 15:54:09,035 | INFO     | 
[2026-03-13 16:55:12] 2026-03-13 15:54:09,039 | INFO     | architecture information:
[2026-03-13 16:55:12] 2026-03-13 15:54:09,039 | INFO     | executing command: cat /etc/os-release
[2026-03-13 16:55:12] 2026-03-13 15:54:09,056 | INFO     | cat /etc/os-release:
[2026-03-13 16:55:12] NAME="CentOS Linux"
[2026-03-13 16:55:12] VERSION="7 (Core)"
[2026-03-13 16:55:12] ID="centos"
[2026-03-13 16:55:12] ID_LIKE="rhel fedora"
[2026-03-13 16:55:12] VERSION_ID="7"
[2026-03-13 16:55:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 16:55:12] ANSI_COLOR="0;31"
[2026-03-13 16:55:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 16:55:12] HOME_URL="https://www.centos.org/"
[2026-03-13 16:55:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 16:55:12] 
[2026-03-13 16:55:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 16:55:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 16:55:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 16:55:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 16:55:12] 
[2026-03-13 16:55:12] 2026-03-13 15:54:09,057 | INFO     | **************************************
[2026-03-13 16:55:12] 2026-03-13 15:54:09,559 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/0
[2026-03-13 16:55:12] 2026-03-13 15:54:09,576 | INFO     | sufficient remaining disk space (21547188224 B)
[2026-03-13 16:55:12] 2026-03-13 15:54:09,577 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 16:55:12] 2026-03-13 15:54:09,577 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 16:55:12] 2026-03-13 15:54:09,577 | INFO     | update_server=False
[2026-03-13 16:55:12] 2026-03-13 15:54:09,577 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 16:55:12] 2026-03-13 15:54:09,577 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 16:55:12] 2026-03-13 15:54:09,663 | INFO     | job.realtimelogging is not enabled
[2026-03-13 16:55:12] 2026-03-13 15:54:09,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 16:55:12] 2026-03-13 15:54:09,748 | INFO     | aborting loop
[2026-03-13 16:55:12] 2026-03-13 15:54:09,777 | INFO     | all data control threads have been joined
[2026-03-13 16:55:12] 2026-03-13 15:54:09,843 | INFO     | all job control threads have been joined
[2026-03-13 16:55:12] 2026-03-13 15:54:10,279 | INFO     | all payload control threads have been joined
[2026-03-13 16:55:12] 2026-03-13 15:54:10,582 | INFO     | [job] retrieve thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:10,604 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:10,668 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:10,753 | INFO     | [job] job monitor thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:10,782 | INFO     | [data] control thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:10,849 | INFO     | [job] control thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:11,218 | INFO     | [data] copytool_in thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:11,284 | INFO     | [payload] control thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:11,321 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:11,484 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:11,582 | INFO     | [data] copytool_out thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:11,654 | INFO     | [payload] failed_post thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:11,806 | INFO     | [payload] validate_post thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:11,836 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 16:55:12] 2026-03-13 15:54:11,977 | INFO     | [job] validate thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:12,444 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 16:55:12] 2026-03-13 15:54:13,449 | INFO     | [job] queue monitor thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:15,841 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 16:55:12] 2026-03-13 15:54:40,108 | INFO     | PID=3604117 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 16:55:12] 2026-03-13 15:54:40,108 | INFO     | .. there are 12 such processes running
[2026-03-13 16:55:12] 2026-03-13 15:54:40,110 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 16:55:12] 2026-03-13 15:54:40,110 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 16:55:12] 2026-03-13 15:54:40,110 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 16:55:12] 2026-03-13 15:54:49,449 | INFO     | [monitor] cgroup control has ended
[2026-03-13 16:55:12] 2026-03-13 15:54:50,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22818897364800)>', '<ExcThread(monitor, started 22818642441984)>']
[2026-03-13 16:55:12] 2026-03-13 15:54:50,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 16:55:12] 2026-03-13 15:54:50,158 | INFO     | [monitor] control thread has ended
[2026-03-13 16:55:12] 2026-03-13 15:54:55,032 | INFO     | all workflow threads have been joined
[2026-03-13 16:55:12] 2026-03-13 15:54:55,032 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 16:55:12] 2026-03-13 15:54:55,033 | INFO     | traces error code: 0
[2026-03-13 16:55:12] 2026-03-13 15:54:55,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 16:55:12] 2026-03-13 15:54:55,171 [wrapper] ==== pilot stdout END ====
[2026-03-13 16:55:12] 2026-03-13 15:54:55,173 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 16:55:12] 2026-03-13 15:54:55,176 [wrapper] pilotpid: 3604117
[2026-03-13 16:55:12] 2026-03-13 15:54:55,179 [wrapper] Pilot exit status: 0
[2026-03-13 16:55:12] 2026-03-13 15:54:55,192 [wrapper] pandaids: 7050440976
[2026-03-13 16:55:12] 2026-03-13 15:54:55,268 [wrapper] cleanup supervisor_pilot 3869058 3604118
[2026-03-13 16:55:12] 2026-03-13 15:54:55,271 [wrapper] Test setup, not cleaning
[2026-03-13 16:55:12] 2026-03-13 15:54:55,279 [wrapper] apfmon messages muted
[2026-03-13 16:55:12] 2026-03-13 15:54:55,282 [wrapper] ==== wrapper stdout END ====
[2026-03-13 16:55:12] 2026-03-13 15:54:55,284 [wrapper] ==== wrapper stderr END ====
[2026-03-13 16:55:12]  *** Error codes and diagnostics ***
[2026-03-13 16:55:12]     "exeErrorCode": 0,
[2026-03-13 16:55:12]     "exeErrorDiag": "",
[2026-03-13 16:55:12]     "pilotErrorCode": 0,
[2026-03-13 16:55:12]     "pilotErrorDiag": "",
[2026-03-13 16:55:12]  *** Listing of results directory ***
[2026-03-13 16:55:12] total 420840
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc    585013 Mar 12 00:24 pilot3.tar.gz
[2026-03-13 16:55:12] -rwx------. 1 boinc boinc     36322 Mar 12 01:08 runpilot2-wrapper.sh
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc      5111 Mar 12 01:09 queuedata.json
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc       100 Mar 13 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 16:55:12] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 12:40 run_atlas
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc       105 Mar 13 12:40 job.xml
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc      6562 Mar 13 12:40 init_data.xml
[2026-03-13 16:55:12] -rw-r--r--. 2 boinc boinc 218283300 Mar 13 12:40 EVNT.48967092._000243.pool.root.1
[2026-03-13 16:55:12] -rw-r--r--. 2 boinc boinc     15845 Mar 13 12:40 start_atlas.sh
[2026-03-13 16:55:12] drwxrwx--x. 2 boinc boinc      4096 Mar 13 12:40 shared
[2026-03-13 16:55:12] -rw-r--r--. 2 boinc boinc    597531 Mar 13 12:40 input.tar.gz
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc         0 Mar 13 12:40 boinc_lockfile
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc      2597 Mar 13 12:40 pandaJob.out
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc   1006495 Mar 13 12:41 agis_schedconf.cvmfs.json
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc       446 Mar 13 12:41 workernode_map.json
[2026-03-13 16:55:12] drwx------. 5 boinc boinc      4096 Mar 13 12:41 pilot3
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc 203655495 Mar 13 16:53 HITS.48967094._005785.pool.root.1
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc       530 Mar 13 16:53 boinc_task_state.xml
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc      1047 Mar 13 16:54 memory_monitor_summary.json
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc   1511578 Mar 13 16:54 agis_ddmendpoints.agis.ALL.json
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc    413392 Mar 13 16:54 log.48967094._005785.job.log.tgz.1
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc      6400 Mar 13 16:54 heartbeat.json
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc        95 Mar 13 16:54 pilot_heartbeat.json
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc      4901 Mar 13 16:54 pilotlog.txt
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc   2120159 Mar 13 16:54 log.48967094._005785.job.log.1
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc       357 Mar 13 16:54 output.list
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc       620 Mar 13 16:54 runtime_log
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc   2549760 Mar 13 16:54 result.tar.gz
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc      9205 Mar 13 16:54 runtime_log.err
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc       666 Mar 13 16:54 o9gNDmvmiK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm4QlLDmzAQBNm.diag
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc        27 Mar 13 16:55 wrapper_checkpoint.txt
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc      8192 Mar 13 16:55 boinc_mmap_file
[2026-03-13 16:55:12] -rw-r--r--. 1 boinc boinc     21187 Mar 13 16:55 stderr.txt
[2026-03-13 16:55:12] HITS file was successfully produced:
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc 203655495 Mar 13 16:53 shared/HITS.pool.root.1
[2026-03-13 16:55:12]  *** Contents of shared directory: ***
[2026-03-13 16:55:12] total 415152
[2026-03-13 16:55:12] -rw-r--r--. 2 boinc boinc 218283300 Mar 13 12:40 ATLAS.root_0
[2026-03-13 16:55:12] -rw-r--r--. 2 boinc boinc     15845 Mar 13 12:40 start_atlas.sh
[2026-03-13 16:55:12] -rw-r--r--. 2 boinc boinc    597531 Mar 13 12:40 input.tar.gz
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc 203655495 Mar 13 16:53 HITS.pool.root.1
[2026-03-13 16:55:12] -rw-------. 1 boinc boinc   2549760 Mar 13 16:54 result.tar.gz
16:55:14 (3599817): run_atlas exited; CPU time 57188.420987
16:55:14 (3599817): called boinc_finish(0)

</stderr_txt>
]]>

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