Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:35:43 (124720): wrapper (7.7.26015): starting
03:35:43 (124720): wrapper: running run_atlas (--nthreads 2)
[2026-03-16 03:35:43] Arguments: --nthreads 2
[2026-03-16 03:35:43] Threads: 2
[2026-03-16 03:35:43] Checking for CVMFS
[2026-03-16 03:35:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-16 03:35:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-16 03:35:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-16 03:35:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-16 03:35:47] 2.13.3.0 2339 6287 43956 157336 1 49 3561181 4096000 0 130560 0 403436 99.927 229388 88 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.35.184:3128 1
[2026-03-16 03:35:47] CVMFS is ok
[2026-03-16 03:35:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 03:35:47] Checking for apptainer binary...
[2026-03-16 03:35:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-16 03:35:47] Running /usr/bin/apptainer --version
[2026-03-16 03:35:48] apptainer version 1.4.5
[2026-03-16 03:35:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 03:35:48] ahanllin03
[2026-03-16 03:35:48] apptainer works
[2026-03-16 03:35:48] Set ATHENA_PROC_NUMBER=2
[2026-03-16 03:35:48] Set ATHENA_CORE_NUMBER=2
[2026-03-16 03:35:48] Starting ATLAS job with PandaID=7050441094
[2026-03-16 03:35:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-16 17:58:52]  *** The last 200 lines of the pilot log: ***
[2026-03-16 17:58:52] 2026-03-16 16:58:04,821 | INFO     | monitor loop #3868: job 0:7050441094 is in state 'finished'
[2026-03-16 17:58:52] 2026-03-16 16:58:04,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,028 | INFO     | job 7050441094 has state=finished
[2026-03-16 17:58:52] 2026-03-16 16:58:06,028 | INFO     | preparing for final server update for job 7050441094 in state='finished'
[2026-03-16 17:58:52] 2026-03-16 16:58:06,028 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-7050441094/jobReport.json
[2026-03-16 17:58:52] 2026-03-16 16:58:06,033 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-03-16 17:58:52] 2026-03-16 16:58:06,033 | INFO     | this job has now completed (state=finished)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,034 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,034 | INFO     | log transfer has been attempted: DONE
[2026-03-16 17:58:52] 2026-03-16 16:58:06,034 | INFO     | job 7050441094 has finished - writing final server update
[2026-03-16 17:58:52] 2026-03-16 16:58:06,034 | INFO     | total number of processed events: 400 (read)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,036 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7050441094/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,037 | INFO     | extracted standard info from prmon json
[2026-03-16 17:58:52] 2026-03-16 16:58:06,037 | INFO     | extracted standard memory fields from prmon json
[2026-03-16 17:58:52] 2026-03-16 16:58:06,038 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-16 17:58:52] 2026-03-16 16:58:06,038 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-16 17:58:52] 2026-03-16 16:58:06,038 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-16 17:58:52] 2026-03-16 16:58:06,074 | INFO     | fitting pss+swap vs Time
[2026-03-16 17:58:52] 2026-03-16 16:58:06,076 | INFO     | sum of square deviations: 189088662845.99854
[2026-03-16 17:58:52] 2026-03-16 16:58:06,140 | INFO     | sum of deviations: -49231082121.79132
[2026-03-16 17:58:52] 2026-03-16 16:58:06,140 | INFO     | mean x: 1773654428.5011792
[2026-03-16 17:58:52] 2026-03-16 16:58:06,140 | INFO     | mean y: 2269366.291273585
[2026-03-16 17:58:52] 2026-03-16 16:58:06,140 | INFO     | intersect: 464057638.05210614
[2026-03-16 17:58:52] 2026-03-16 16:58:06,143 | INFO     | chi2: 2.6443959979679823
[2026-03-16 17:58:52] 2026-03-16 16:58:06,146 | INFO     | sum of square deviations: 185763614760.99866
[2026-03-16 17:58:52] 2026-03-16 16:58:06,211 | INFO     | sum of deviations: -2024277061.1067867
[2026-03-16 17:58:52] 2026-03-16 16:58:06,211 | INFO     | mean x: 1773654276.0011861
[2026-03-16 17:58:52] 2026-03-16 16:58:06,211 | INFO     | mean y: 2271521.106761566
[2026-03-16 17:58:52] 2026-03-16 16:58:06,212 | INFO     | intersect: 21599136.312045403
[2026-03-16 17:58:52] 2026-03-16 16:58:06,214 | INFO     | chi2: 1.9948987040367423
[2026-03-16 17:58:52] 2026-03-16 16:58:06,215 | INFO     | current chi2=1.9948987040367423 (change=24.561272004281108 %)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,215 | INFO     | right removable region: 842
[2026-03-16 17:58:52] 2026-03-16 16:58:06,217 | INFO     | sum of square deviations: 185763614150.99866
[2026-03-16 17:58:52] 2026-03-16 16:58:06,280 | INFO     | sum of deviations: -165795642528.42456
[2026-03-16 17:58:52] 2026-03-16 16:58:06,280 | INFO     | mean x: 1773654581.0011861
[2026-03-16 17:58:52] 2026-03-16 16:58:06,280 | INFO     | mean y: 2274697.424673784
[2026-03-16 17:58:52] 2026-03-16 16:58:06,281 | INFO     | intersect: 1585276848.9738147
[2026-03-16 17:58:52] 2026-03-16 16:58:06,284 | INFO     | chi2: 1.2136506490850452
[2026-03-16 17:58:52] 2026-03-16 16:58:06,284 | INFO     | current chi2=1.2136506490850452 (change=54.104806919325114 %)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,286 | INFO     | sum of square deviations: 182477775493.4988
[2026-03-16 17:58:52] 2026-03-16 16:58:06,351 | INFO     | sum of deviations: -143508478635.48206
[2026-03-16 17:58:52] 2026-03-16 16:58:06,351 | INFO     | mean x: 1773654733.5011933
[2026-03-16 17:58:52] 2026-03-16 16:58:06,352 | INFO     | mean y: 2273659.9821002386
[2026-03-16 17:58:52] 2026-03-16 16:58:06,352 | INFO     | intersect: 1397153073.3298697
[2026-03-16 17:58:52] 2026-03-16 16:58:06,355 | INFO     | chi2: 1.1638304551123948
[2026-03-16 17:58:52] 2026-03-16 16:58:06,355 | INFO     | current chi2=1.1638304551123948 (change=4.104986390458336 %)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,355 | INFO     | left removable region: 20
[2026-03-16 17:58:52] 2026-03-16 16:58:06,357 | INFO     | sum of square deviations: 172223875085.49872
[2026-03-16 17:58:52] 2026-03-16 16:58:06,420 | INFO     | sum of deviations: -6426792309.751855
[2026-03-16 17:58:52] 2026-03-16 16:58:06,421 | INFO     | mean x: 1773654855.5012167
[2026-03-16 17:58:52] 2026-03-16 16:58:06,421 | INFO     | mean y: 2271559.2518248176
[2026-03-16 17:58:52] 2026-03-16 16:58:06,421 | INFO     | intersect: 68458151.44080202
[2026-03-16 17:58:52] 2026-03-16 16:58:06,422 | INFO     | chi2: 0.2795237501694093
[2026-03-16 17:58:52] 2026-03-16 16:58:06,422 | INFO     | current memory leak: -0.04 B/s (using 822 data points, chi2=0.28)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,424 | INFO     | could have reported an average CPU frequency of 3192 MHz (32 samples)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,424 | INFO     | ..............................
[2026-03-16 17:58:52] 2026-03-16 16:58:06,424 | INFO     | . Timing measurements:
[2026-03-16 17:58:52] 2026-03-16 16:58:06,424 | INFO     | . get job = 0 s
[2026-03-16 17:58:52] 2026-03-16 16:58:06,424 | INFO     | . initial setup = 7 s
[2026-03-16 17:58:52] 2026-03-16 16:58:06,424 | INFO     | . payload setup = 8 s
[2026-03-16 17:58:52] 2026-03-16 16:58:06,425 | INFO     | . stage-in = 0 s
[2026-03-16 17:58:52] 2026-03-16 16:58:06,425 | INFO     | . payload execution = 51686 s
[2026-03-16 17:58:52] 2026-03-16 16:58:06,425 | INFO     | . stage-out = 1 s
[2026-03-16 17:58:52] 2026-03-16 16:58:06,425 | INFO     | . log creation = 0 s
[2026-03-16 17:58:52] 2026-03-16 16:58:06,425 | INFO     | ..............................
[2026-03-16 17:58:52] 2026-03-16 16:58:06,647 | INFO     | 
[2026-03-16 17:58:52] 2026-03-16 16:58:06,648 | INFO     | job summary report
[2026-03-16 17:58:52] 2026-03-16 16:58:06,648 | INFO     | --------------------------------------------------
[2026-03-16 17:58:52] 2026-03-16 16:58:06,648 | INFO     | PanDA job id: 7050441094
[2026-03-16 17:58:52] 2026-03-16 16:58:06,648 | INFO     | task id: 48967094
[2026-03-16 17:58:52] 2026-03-16 16:58:06,648 | INFO     | errors: (none)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,648 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-16 17:58:52] 2026-03-16 16:58:06,648 | INFO     | pilot state: finished 
[2026-03-16 17:58:52] 2026-03-16 16:58:06,648 | INFO     | transexitcode: 0
[2026-03-16 17:58:52] 2026-03-16 16:58:06,649 | INFO     | exeerrorcode: 0
[2026-03-16 17:58:52] 2026-03-16 16:58:06,649 | INFO     | exeerrordiag: 
[2026-03-16 17:58:52] 2026-03-16 16:58:06,649 | INFO     | exitcode: 0
[2026-03-16 17:58:52] 2026-03-16 16:58:06,649 | INFO     | exitmsg: OK
[2026-03-16 17:58:52] 2026-03-16 16:58:06,649 | INFO     | cpuconsumptiontime: 100263 s
[2026-03-16 17:58:52] 2026-03-16 16:58:06,649 | INFO     | nevents: 400
[2026-03-16 17:58:52] 2026-03-16 16:58:06,649 | INFO     | neventsw: 0
[2026-03-16 17:58:52] 2026-03-16 16:58:06,650 | INFO     | pid: 133115
[2026-03-16 17:58:52] 2026-03-16 16:58:06,650 | INFO     | pgrp: 133115
[2026-03-16 17:58:52] 2026-03-16 16:58:06,650 | INFO     | corecount: 2
[2026-03-16 17:58:52] 2026-03-16 16:58:06,650 | INFO     | event service: False
[2026-03-16 17:58:52] 2026-03-16 16:58:06,650 | INFO     | sizes: {0: 2279128, 1: 2279820, 2: 2280281, 51698: 2328505, 51699: 2328504, 51701: 2337572, 51704: 2337756, 51707: 2337950}
[2026-03-16 17:58:52] 2026-03-16 16:58:06,650 | INFO     | --------------------------------------------------
[2026-03-16 17:58:52] 2026-03-16 16:58:06,650 | INFO     | 
[2026-03-16 17:58:52] 2026-03-16 16:58:06,651 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-03-16 17:58:52] 2026-03-16 16:58:06,677 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,677 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,678 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,678 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,678 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,678 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,678 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,678 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,679 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,679 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,679 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,679 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,679 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,680 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,680 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-16 17:58:52] 2026-03-16 16:58:06,681 | INFO     | job 7050441094 has completed (purged errors)
[2026-03-16 17:58:52] 2026-03-16 16:58:06,681 | INFO     | overall cleanup function is called
[2026-03-16 17:58:52] 2026-03-16 16:58:07,694 | INFO     | --- collectZombieJob: --- 10, [133115]
[2026-03-16 17:58:52] 2026-03-16 16:58:07,694 | INFO     | zombie collector waiting for pid 133115
[2026-03-16 17:58:52] 2026-03-16 16:58:07,694 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-16 17:58:52] 2026-03-16 16:58:07,694 | INFO     | collected zombie processes
[2026-03-16 17:58:52] 2026-03-16 16:58:07,695 | INFO     | will attempt to kill all subprocesses of pid=133115
[2026-03-16 17:58:52] 2026-03-16 16:58:07,751 | INFO     | process IDs to be killed: [133115] (in reverse order)
[2026-03-16 17:58:52] 2026-03-16 16:58:07,793 | WARNING  | found no corresponding commands to process id(s)
[2026-03-16 17:58:52] 2026-03-16 16:58:07,794 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-16 17:58:52] 2026-03-16 16:58:07,796 | INFO     | did not find any defunct processes belonging to 133115
[2026-03-16 17:58:52] 2026-03-16 16:58:07,798 | INFO     | did not find any defunct processes belonging to 133115
[2026-03-16 17:58:52] 2026-03-16 16:58:07,799 | INFO     | ready for new job
[2026-03-16 17:58:52] 2026-03-16 16:58:07,799 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-16 17:58:52] 2026-03-16 16:58:07,802 | INFO     | **************************************
[2026-03-16 17:58:52] 2026-03-16 16:58:07,803 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-16 17:58:52] 2026-03-16 16:58:07,803 | INFO     | **************************************
[2026-03-16 17:58:52] 2026-03-16 16:58:07,803 | INFO     | 
[2026-03-16 17:58:52] 2026-03-16 16:58:07,803 | INFO     | pilot is running in a VM
[2026-03-16 17:58:52] 2026-03-16 16:58:07,803 | INFO     | architecture information:
[2026-03-16 17:58:52] 2026-03-16 16:58:07,804 | INFO     | executing command: cat /etc/os-release
[2026-03-16 17:58:52] 2026-03-16 16:58:07,820 | INFO     | cat /etc/os-release:
[2026-03-16 17:58:52] NAME="CentOS Linux"
[2026-03-16 17:58:52] VERSION="7 (Core)"
[2026-03-16 17:58:52] ID="centos"
[2026-03-16 17:58:52] ID_LIKE="rhel fedora"
[2026-03-16 17:58:52] VERSION_ID="7"
[2026-03-16 17:58:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-16 17:58:52] ANSI_COLOR="0;31"
[2026-03-16 17:58:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-16 17:58:52] HOME_URL="https://www.centos.org/"
[2026-03-16 17:58:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-16 17:58:52] 
[2026-03-16 17:58:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-16 17:58:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-16 17:58:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-16 17:58:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-16 17:58:52] 
[2026-03-16 17:58:52] 2026-03-16 16:58:07,821 | INFO     | **************************************
[2026-03-16 17:58:52] 2026-03-16 16:58:08,323 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-03-16 17:58:52] 2026-03-16 16:58:08,380 | INFO     | sufficient remaining disk space (16275996672 B)
[2026-03-16 17:58:52] 2026-03-16 16:58:08,381 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-16 17:58:52] 2026-03-16 16:58:08,381 | INFO     | current server update state: UPDATING_FINAL
[2026-03-16 17:58:52] 2026-03-16 16:58:08,381 | INFO     | update_server=False
[2026-03-16 17:58:52] 2026-03-16 16:58:08,381 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-16 17:58:52] 2026-03-16 16:58:08,382 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-16 17:58:52] 2026-03-16 16:58:08,382 | INFO     | aborting loop
[2026-03-16 17:58:52] 2026-03-16 16:58:08,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-16 17:58:52] 2026-03-16 16:58:08,738 | INFO     | all data control threads have been joined
[2026-03-16 17:58:52] 2026-03-16 16:58:08,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-16 17:58:52] 2026-03-16 16:58:09,387 | INFO     | [job] queue monitor thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:09,388 | INFO     | [job] retrieve thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:09,388 | INFO     | [job] job monitor thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:09,694 | INFO     | all job control threads have been joined
[2026-03-16 17:58:52] 2026-03-16 16:58:09,750 | INFO     | [data] control thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:09,750 | INFO     | [payload] validate_pre thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:09,773 | INFO     | [job] create_data_payload thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:09,773 | INFO     | [job] validate thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:09,915 | INFO     | all payload control threads have been joined
[2026-03-16 17:58:52] 2026-03-16 16:58:09,916 | INFO     | [payload] execute_payloads thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:10,064 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:10,090 | INFO     | [payload] failed_post thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:10,261 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-16 17:58:52] 2026-03-16 16:58:10,715 | INFO     | [job] control thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:10,716 | INFO     | [data] copytool_in thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:10,786 | INFO     | [data] copytool_out thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:10,964 | INFO     | [payload] validate_post thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:10,965 | INFO     | [payload] control thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:14,390 | INFO     | [data] queue_monitor thread has finished
[2026-03-16 17:58:52] 2026-03-16 16:58:37,999 | INFO     | PID=128753 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-16 17:58:52] 2026-03-16 16:58:37,999 | INFO     | found 0 job(s) in 20 queues
[2026-03-16 17:58:52] 2026-03-16 16:58:38,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-16 17:58:52] 2026-03-16 16:58:38,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-16 17:58:52] 2026-03-16 16:58:45,333 | INFO     | [monitor] cgroup control has ended
[2026-03-16 17:58:52] 2026-03-16 16:58:46,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123761542633280)>', '<ExcThread(monitor, started 123760682198784)>']
[2026-03-16 17:58:52] 2026-03-16 16:58:47,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-16 17:58:52] 2026-03-16 16:58:47,257 | INFO     | [monitor] control thread has ended
[2026-03-16 17:58:52] 2026-03-16 16:58:52,068 | INFO     | all workflow threads have been joined
[2026-03-16 17:58:52] 2026-03-16 16:58:52,069 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-16 17:58:52] 2026-03-16 16:58:52,069 | INFO     | traces error code: 0
[2026-03-16 17:58:52] 2026-03-16 16:58:52,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-16 17:58:52] 2026-03-16 16:58:52,222 [wrapper] ==== pilot stdout END ====
[2026-03-16 17:58:52] 2026-03-16 16:58:52,225 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-16 17:58:52] 2026-03-16 16:58:52,228 [wrapper] pilotpid: 128753
[2026-03-16 17:58:52] 2026-03-16 16:58:52,231 [wrapper] Pilot exit status: 0
[2026-03-16 17:58:52] 2026-03-16 16:58:52,249 [wrapper] pandaids: 7050441094
[2026-03-16 17:58:52] 2026-03-16 16:58:52,275 [wrapper] cleanup supervisor_pilot  140108 128754
[2026-03-16 17:58:52] 2026-03-16 16:58:52,281 [wrapper] Test setup, not cleaning
[2026-03-16 17:58:52] 2026-03-16 16:58:52,285 [wrapper] apfmon messages muted
[2026-03-16 17:58:52] 2026-03-16 16:58:52,288 [wrapper] ==== wrapper stdout END ====
[2026-03-16 17:58:52] 2026-03-16 16:58:52,292 [wrapper] ==== wrapper stderr END ====
[2026-03-16 17:58:52]  *** Error codes and diagnostics ***
[2026-03-16 17:58:52]     "exeErrorCode": 0,
[2026-03-16 17:58:52]     "exeErrorDiag": "",
[2026-03-16 17:58:52]     "pilotErrorCode": 0,
[2026-03-16 17:58:52]     "pilotErrorDiag": "",
[2026-03-16 17:58:52]  *** Listing of results directory ***
[2026-03-16 17:58:52] total 433380
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc    585013 Mar 12 00:24 pilot3.tar.gz
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc      5111 Mar 12 01:06 queuedata.json
[2026-03-16 17:58:52] -rwx------ 1 boinc boinc     36322 Mar 12 01:07 runpilot2-wrapper.sh
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc       100 Mar 16 03:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-16 17:58:52] -rwxr-xr-x 1 boinc boinc      7986 Mar 16 03:35 run_atlas
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc       105 Mar 16 03:35 job.xml
[2026-03-16 17:58:52] -rw-r--r-- 2 boinc boinc 217908958 Mar 16 03:35 EVNT.48967092._000265.pool.root.1
[2026-03-16 17:58:52] -rw-r--r-- 2 boinc boinc    597535 Mar 16 03:35 input.tar.gz
[2026-03-16 17:58:52] drwxrwx--x 2 boinc boinc      4096 Mar 16 03:35 shared
[2026-03-16 17:58:52] -rw-r--r-- 2 boinc boinc     15845 Mar 16 03:35 start_atlas.sh
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc      6433 Mar 16 03:35 init_data.xml
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc         0 Mar 16 03:35 boinc_setup_complete
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc         0 Mar 16 03:35 boinc_lockfile
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc      2594 Mar 16 03:35 pandaJob.out
[2026-03-16 17:58:52] -rw------- 1 boinc boinc        42 Mar 16 03:35 setup.sh.local
[2026-03-16 17:58:52] -rw------- 1 boinc boinc   1006471 Mar 16 03:36 agis_schedconf.cvmfs.json
[2026-03-16 17:58:52] -rw------- 1 boinc boinc       415 Mar 16 03:36 workernode_map.json
[2026-03-16 17:58:52] drwx------ 5 boinc boinc      4096 Mar 16 03:36 pilot3
[2026-03-16 17:58:52] -rw------- 1 boinc boinc 205956527 Mar 16 17:57 HITS.48967094._005903.pool.root.1
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc       531 Mar 16 17:57 boinc_task_state.xml
[2026-03-16 17:58:52] -rw------- 1 boinc boinc      1028 Mar 16 17:57 memory_monitor_summary.json
[2026-03-16 17:58:52] -rw------- 1 boinc boinc   1511579 Mar 16 17:57 agis_ddmendpoints.agis.ALL.json
[2026-03-16 17:58:52] -rw------- 1 boinc boinc    849431 Mar 16 17:58 log.48967094._005903.job.log.tgz.1
[2026-03-16 17:58:52] -rw------- 1 boinc boinc        95 Mar 16 17:58 pilot_heartbeat.json
[2026-03-16 17:58:52] -rw------- 1 boinc boinc      6315 Mar 16 17:58 heartbeat.json
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc      8192 Mar 16 17:58 boinc_mmap_file
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc        29 Mar 16 17:58 wrapper_checkpoint.txt
[2026-03-16 17:58:52] -rw------- 1 boinc boinc      4812 Mar 16 17:58 pilotlog.txt
[2026-03-16 17:58:52] -rw------- 1 boinc boinc   7137450 Mar 16 17:58 log.48967094._005903.job.log.1
[2026-03-16 17:58:52] -rw------- 1 boinc boinc       357 Mar 16 17:58 output.list
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc       620 Mar 16 17:58 runtime_log
[2026-03-16 17:58:52] -rw------- 1 boinc boinc   8007680 Mar 16 17:58 result.tar.gz
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc      9374 Mar 16 17:58 runtime_log.err
[2026-03-16 17:58:52] -rw------- 1 boinc boinc       660 Mar 16 17:58 V1TKDm1kiK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmnfiLDmZkHETm.diag
[2026-03-16 17:58:52] -rw-r--r-- 1 boinc boinc     21052 Mar 16 17:58 stderr.txt
[2026-03-16 17:58:52] HITS file was successfully produced:
[2026-03-16 17:58:52] -rw------- 1 boinc boinc 205956527 Mar 16 17:57 shared/HITS.pool.root.1
[2026-03-16 17:58:52]  *** Contents of shared directory: ***
[2026-03-16 17:58:52] total 422360
[2026-03-16 17:58:52] -rw-r--r-- 2 boinc boinc 217908958 Mar 16 03:35 ATLAS.root_0
[2026-03-16 17:58:52] -rw-r--r-- 2 boinc boinc    597535 Mar 16 03:35 input.tar.gz
[2026-03-16 17:58:52] -rw-r--r-- 2 boinc boinc     15845 Mar 16 03:35 start_atlas.sh
[2026-03-16 17:58:52] -rw------- 1 boinc boinc 205956527 Mar 16 17:57 HITS.pool.root.1
[2026-03-16 17:58:52] -rw------- 1 boinc boinc   8007680 Mar 16 17:58 result.tar.gz
17:58:54 (124720): run_atlas exited; CPU time 99524.292703
17:58:54 (124720): called boinc_finish(0)

</stderr_txt>
]]>

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