Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:34:24 (6076): wrapper (7.7.26015): starting
00:34:24 (6076): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 00:34:24] Arguments: --nthreads 8
[2026-03-13 00:34:24] Threads: 8
[2026-03-13 00:34:24] Checking for CVMFS
[2026-03-13 00:34:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 00:34:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 00:34:24] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 00:34:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 00:34:25] 2.11.2.0 14084 125360 139604 157220 2 393 14283734 25165824 4917 130560 159 38470786 99.801 28681773 1012 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 00:34:25] CVMFS is ok
[2026-03-13 00:34:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 00:34:25] Checking for apptainer binary...
[2026-03-13 00:34:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 00:34:25] Running /usr/bin/apptainer --version
[2026-03-13 00:34:25] apptainer version 1.3.2-1.el7
[2026-03-13 00:34:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 00:34:26] cg-vwn482.simple-grid.lan
[2026-03-13 00:34:26] apptainer works
[2026-03-13 00:34:26] Set ATHENA_PROC_NUMBER=8
[2026-03-13 00:34:26] Set ATHENA_CORE_NUMBER=8
[2026-03-13 00:34:26] Starting ATLAS job with PandaID=7051174129
[2026-03-13 00:34:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 06:16:43]  *** The last 200 lines of the pilot log: ***
[2026-03-13 06:16:43] 2026-03-13 05:15:55,453 | INFO     | job 7051174129 has finished - writing final server update
[2026-03-13 06:16:43] 2026-03-13 05:15:55,453 | INFO     | total number of processed events: 400 (read)
[2026-03-13 06:16:43] 2026-03-13 05:15:55,456 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-7051174129/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 06:16:43] 2026-03-13 05:15:55,456 | INFO     | extracted standard info from prmon json
[2026-03-13 06:16:43] 2026-03-13 05:15:55,456 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 06:16:43] 2026-03-13 05:15:55,456 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 06:16:43] 2026-03-13 05:15:55,457 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 06:16:43] 2026-03-13 05:15:55,457 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 06:16:43] 2026-03-13 05:15:55,464 | INFO     | fitting pss+swap vs Time
[2026-03-13 06:16:43] 2026-03-13 05:15:55,464 | INFO     | sum of square deviations: 11553509647.5
[2026-03-13 06:16:43] 2026-03-13 05:15:55,468 | INFO     | sum of deviations: -28182090280.00003
[2026-03-13 06:16:43] 2026-03-13 05:15:55,469 | INFO     | mean x: 1773368753.5
[2026-03-13 06:16:43] 2026-03-13 05:15:55,469 | INFO     | mean y: 2515348.97005988
[2026-03-13 06:16:43] 2026-03-13 05:15:55,469 | INFO     | intersect: 4328234531.771143
[2026-03-13 06:16:43] 2026-03-13 05:15:55,469 | INFO     | chi2: 2.429449476436542
[2026-03-13 06:16:43] 2026-03-13 05:15:55,473 | INFO     | sum of square deviations: 11042365180.0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,477 | INFO     | sum of deviations: -5343581456.000009
[2026-03-13 06:16:43] 2026-03-13 05:15:55,477 | INFO     | mean x: 1773368601.0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,477 | INFO     | mean y: 2522082.878419453
[2026-03-13 06:16:43] 2026-03-13 05:15:55,477 | INFO     | intersect: 860684208.1556671
[2026-03-13 06:16:43] 2026-03-13 05:15:55,478 | INFO     | chi2: 1.6630901978453685
[2026-03-13 06:16:43] 2026-03-13 05:15:55,478 | INFO     | current chi2=1.6630901978453685 (change=31.544565385045626 %)
[2026-03-13 06:16:43] 2026-03-13 05:15:55,479 | INFO     | sum of square deviations: 10546523325.0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,482 | INFO     | sum of deviations: -5094844043.500001
[2026-03-13 06:16:43] 2026-03-13 05:15:55,482 | INFO     | mean x: 1773368448.5
[2026-03-13 06:16:43] 2026-03-13 05:15:55,483 | INFO     | mean y: 2522159.0401234566
[2026-03-13 06:16:43] 2026-03-13 05:15:55,483 | INFO     | intersect: 859205958.8430375
[2026-03-13 06:16:43] 2026-03-13 05:15:55,483 | INFO     | chi2: 1.6630870698410185
[2026-03-13 06:16:43] 2026-03-13 05:15:55,483 | INFO     | current chi2=1.6630870698410185 (change=0.0001880838666499412 %)
[2026-03-13 06:16:43] 2026-03-13 05:15:55,484 | INFO     | right removable region: 323
[2026-03-13 06:16:43] 2026-03-13 05:15:55,484 | INFO     | sum of square deviations: 11042365180.0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,488 | INFO     | sum of deviations: -78842157668.0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,488 | INFO     | mean x: 1773368906.0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,488 | INFO     | mean y: 2530356.3161094226
[2026-03-13 06:16:43] 2026-03-13 05:15:55,488 | INFO     | intersect: 12664331393.61713
[2026-03-13 06:16:43] 2026-03-13 05:15:55,489 | INFO     | chi2: 0.9841072897453926
[2026-03-13 06:16:43] 2026-03-13 05:15:55,489 | INFO     | current chi2=0.9841072897453926 (change=59.492580550024144 %)
[2026-03-13 06:16:43] 2026-03-13 05:15:55,490 | INFO     | sum of square deviations: 10546523325.0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,503 | INFO     | sum of deviations: -76383595307.0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,503 | INFO     | mean x: 1773369058.5
[2026-03-13 06:16:43] 2026-03-13 05:15:55,504 | INFO     | mean y: 2529584.685185185
[2026-03-13 06:16:43] 2026-03-13 05:15:55,504 | INFO     | intersect: 12846222270.911676
[2026-03-13 06:16:43] 2026-03-13 05:15:55,504 | INFO     | chi2: 0.9712199837720272
[2026-03-13 06:16:43] 2026-03-13 05:15:55,504 | INFO     | current chi2=0.9712199837720272 (change=1.30954278132617 %)
[2026-03-13 06:16:43] 2026-03-13 05:15:55,504 | INFO     | left removable region: 20
[2026-03-13 06:16:43] 2026-03-13 05:15:55,505 | INFO     | sum of square deviations: 8625843592.0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,508 | INFO     | sum of deviations: -33934216978.999996
[2026-03-13 06:16:43] 2026-03-13 05:15:55,508 | INFO     | mean x: 1773369028.0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,509 | INFO     | mean y: 2530732.01650165
[2026-03-13 06:16:43] 2026-03-13 05:15:55,509 | INFO     | intersect: 6978994974.401099
[2026-03-13 06:16:43] 2026-03-13 05:15:55,509 | INFO     | chi2: 0.15571723255362005
[2026-03-13 06:16:43] 2026-03-13 05:15:55,509 | INFO     | current memory leak: -3.93 B/s (using 303 data points, chi2=0.16)
[2026-03-13 06:16:43] 2026-03-13 05:15:55,510 | INFO     | could have reported an average CPU frequency of 2249 MHz (15 samples)
[2026-03-13 06:16:43] 2026-03-13 05:15:55,510 | INFO     | ..............................
[2026-03-13 06:16:43] 2026-03-13 05:15:55,510 | INFO     | . Timing measurements:
[2026-03-13 06:16:43] 2026-03-13 05:15:55,510 | INFO     | . get job = 0 s
[2026-03-13 06:16:43] 2026-03-13 05:15:55,510 | INFO     | . initial setup = 51 s
[2026-03-13 06:16:43] 2026-03-13 05:15:55,511 | INFO     | . payload setup = 27 s
[2026-03-13 06:16:43] 2026-03-13 05:15:55,511 | INFO     | . stage-in = 0 s
[2026-03-13 06:16:43] 2026-03-13 05:15:55,511 | INFO     | . payload execution = 20347 s
[2026-03-13 06:16:43] 2026-03-13 05:15:55,511 | INFO     | . stage-out = 13 s
[2026-03-13 06:16:43] 2026-03-13 05:15:55,511 | INFO     | . log creation = 1 s
[2026-03-13 06:16:43] 2026-03-13 05:15:55,511 | INFO     | ..............................
[2026-03-13 06:16:43] 2026-03-13 05:15:55,526 | INFO     | time since job start (20398s) is within the limit (345600.0s)
[2026-03-13 06:16:43] 2026-03-13 05:15:55,634 | INFO     | 
[2026-03-13 06:16:43] 2026-03-13 05:15:55,634 | INFO     | job summary report
[2026-03-13 06:16:43] 2026-03-13 05:15:55,634 | INFO     | --------------------------------------------------
[2026-03-13 06:16:43] 2026-03-13 05:15:55,634 | INFO     | PanDA job id: 7051174129
[2026-03-13 06:16:43] 2026-03-13 05:15:55,634 | INFO     | task id: 48966968
[2026-03-13 06:16:43] 2026-03-13 05:15:55,634 | INFO     | errors: (none)
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | pilot state: finished 
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | transexitcode: 0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | exeerrorcode: 0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | exeerrordiag: 
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | exitcode: 0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | exitmsg: OK
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | cpuconsumptiontime: 111634 s
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | nevents: 400
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | neventsw: 0
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | pid: 16547
[2026-03-13 06:16:43] 2026-03-13 05:15:55,635 | INFO     | pgrp: 16547
[2026-03-13 06:16:43] 2026-03-13 05:15:55,636 | INFO     | corecount: 8
[2026-03-13 06:16:43] 2026-03-13 05:15:55,636 | INFO     | event service: False
[2026-03-13 06:16:43] 2026-03-13 05:15:55,636 | INFO     | sizes: {0: 2279749, 1: 2280210, 20379: 2313710, 20380: 2313709, 20393: 2322791, 20395: 2322847, 20396: 2323169}
[2026-03-13 06:16:43] 2026-03-13 05:15:55,636 | INFO     | --------------------------------------------------
[2026-03-13 06:16:43] 2026-03-13 05:15:55,636 | INFO     | 
[2026-03-13 06:16:43] 2026-03-13 05:15:55,636 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-03-13 06:16:43] 2026-03-13 05:15:56,100 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,101 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,101 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,101 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,101 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,101 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,101 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,101 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,101 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,101 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,102 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,102 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 06:16:43] 2026-03-13 05:15:56,102 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,102 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 06:16:43] 2026-03-13 05:15:56,103 | INFO     | job 7051174129 has completed (purged errors)
[2026-03-13 06:16:43] 2026-03-13 05:15:56,103 | INFO     | overall cleanup function is called
[2026-03-13 06:16:43] 2026-03-13 05:15:57,111 | INFO     | --- collectZombieJob: --- 10, [16547]
[2026-03-13 06:16:43] 2026-03-13 05:15:57,111 | INFO     | zombie collector waiting for pid 16547
[2026-03-13 06:16:43] 2026-03-13 05:15:57,111 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 06:16:43] 2026-03-13 05:15:57,111 | INFO     | collected zombie processes
[2026-03-13 06:16:43] 2026-03-13 05:15:57,111 | INFO     | will attempt to kill all subprocesses of pid=16547
[2026-03-13 06:16:43] 2026-03-13 05:15:57,240 | INFO     | process IDs to be killed: [16547] (in reverse order)
[2026-03-13 06:16:43] 2026-03-13 05:15:57,838 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 06:16:43] 2026-03-13 05:15:57,839 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 06:16:43] 2026-03-13 05:15:57,842 | INFO     | did not find any defunct processes belonging to 16547
[2026-03-13 06:16:43] 2026-03-13 05:15:57,845 | INFO     | did not find any defunct processes belonging to 16547
[2026-03-13 06:16:43] 2026-03-13 05:15:57,845 | INFO     | ready for new job
[2026-03-13 06:16:43] 2026-03-13 05:15:57,845 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 06:16:43] 2026-03-13 05:15:57,847 | INFO     | **************************************
[2026-03-13 06:16:43] 2026-03-13 05:15:57,848 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 06:16:43] 2026-03-13 05:15:57,848 | INFO     | **************************************
[2026-03-13 06:16:43] 2026-03-13 05:15:57,848 | INFO     | 
[2026-03-13 06:16:43] 2026-03-13 05:15:57,848 | INFO     | pilot is running in a VM
[2026-03-13 06:16:43] 2026-03-13 05:15:57,848 | INFO     | architecture information:
[2026-03-13 06:16:43] 2026-03-13 05:15:57,851 | INFO     | executing command: cat /etc/os-release
[2026-03-13 06:16:43] 2026-03-13 05:15:58,083 | INFO     | cat /etc/os-release:
[2026-03-13 06:16:43] NAME="CentOS Linux"
[2026-03-13 06:16:43] VERSION="7 (Core)"
[2026-03-13 06:16:43] ID="centos"
[2026-03-13 06:16:43] ID_LIKE="rhel fedora"
[2026-03-13 06:16:43] VERSION_ID="7"
[2026-03-13 06:16:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 06:16:43] ANSI_COLOR="0;31"
[2026-03-13 06:16:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 06:16:43] HOME_URL="https://www.centos.org/"
[2026-03-13 06:16:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 06:16:43] 
[2026-03-13 06:16:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 06:16:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 06:16:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 06:16:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 06:16:43] 
[2026-03-13 06:16:43] 2026-03-13 05:15:58,084 | INFO     | **************************************
[2026-03-13 06:16:43] 2026-03-13 05:15:58,586 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-03-13 06:16:43] 2026-03-13 05:15:58,791 | INFO     | sufficient remaining disk space (495999516672 B)
[2026-03-13 06:16:43] 2026-03-13 05:15:58,791 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 06:16:43] 2026-03-13 05:15:58,791 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 06:16:43] 2026-03-13 05:15:58,791 | INFO     | update_server=False
[2026-03-13 06:16:43] 2026-03-13 05:15:58,791 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 06:16:43] 2026-03-13 05:15:58,791 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 06:16:43] 2026-03-13 05:15:58,899 | INFO     | all data control threads have been joined
[2026-03-13 06:16:43] 2026-03-13 05:15:59,567 | INFO     | all job control threads have been joined
[2026-03-13 06:16:43] 2026-03-13 05:15:59,603 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 06:16:43] 2026-03-13 05:15:59,603 | INFO     | aborting loop
[2026-03-13 06:16:43] 2026-03-13 05:15:59,797 | INFO     | [job] retrieve thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:15:59,905 | INFO     | [data] control thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:15:59,911 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:00,068 | INFO     | [data] copytool_in thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:00,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 06:16:43] 2026-03-13 05:16:00,186 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:00,236 | INFO     | all payload control threads have been joined
[2026-03-13 06:16:43] 2026-03-13 05:16:00,517 | INFO     | [job] validate thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:00,573 | INFO     | [job] control thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:00,609 | INFO     | [job] job monitor thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:00,626 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:00,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 06:16:43] 2026-03-13 05:16:00,799 | INFO     | [data] copytool_out thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:01,024 | INFO     | [payload] validate_post thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:01,083 | INFO     | [payload] failed_post thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:01,193 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:01,241 | INFO     | [payload] control thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:01,656 | INFO     | [job] queue monitor thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:04,186 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 06:16:43] 2026-03-13 05:16:28,700 | INFO     | PID=11980 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 06:16:43] 2026-03-13 05:16:28,700 | INFO     | .. there are 9 such processes running
[2026-03-13 06:16:43] 2026-03-13 05:16:28,701 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 06:16:43] 2026-03-13 05:16:28,701 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 06:16:43] 2026-03-13 05:16:28,701 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 06:16:43] 2026-03-13 05:16:32,225 | INFO     | [monitor] cgroup control has ended
[2026-03-13 06:16:43] 2026-03-13 05:16:33,857 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139800602683200)>', '<ExcThread(monitor, started 139800002668288)>']
[2026-03-13 06:16:43] 2026-03-13 05:16:34,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 06:16:43] 2026-03-13 05:16:34,738 | INFO     | [monitor] control thread has ended
[2026-03-13 06:16:43] 2026-03-13 05:16:38,883 | INFO     | all workflow threads have been joined
[2026-03-13 06:16:43] 2026-03-13 05:16:38,883 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 06:16:43] 2026-03-13 05:16:38,883 | INFO     | traces error code: 0
[2026-03-13 06:16:43] 2026-03-13 05:16:38,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 06:16:43] 2026-03-13 05:16:39,049 [wrapper] ==== pilot stdout END ====
[2026-03-13 06:16:43] 2026-03-13 05:16:39,051 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 06:16:43] 2026-03-13 05:16:39,083 [wrapper] pilotpid: 11980
[2026-03-13 06:16:43] 2026-03-13 05:16:39,165 [wrapper] Pilot exit status: 0
[2026-03-13 06:16:43] 2026-03-13 05:16:39,599 [wrapper] pandaids: 7051174129
[2026-03-13 06:16:43] 2026-03-13 05:16:40,491 [wrapper] cleanup supervisor_pilot 10025 11981
[2026-03-13 06:16:43] 2026-03-13 05:16:40,590 [wrapper] Test setup, not cleaning
[2026-03-13 06:16:43] 2026-03-13 05:16:40,674 [wrapper] apfmon messages muted
[2026-03-13 06:16:43] 2026-03-13 05:16:40,749 [wrapper] ==== wrapper stdout END ====
[2026-03-13 06:16:43] 2026-03-13 05:16:40,885 [wrapper] ==== wrapper stderr END ====
[2026-03-13 06:16:43]  *** Error codes and diagnostics ***
[2026-03-13 06:16:43]     "exeErrorCode": 0,
[2026-03-13 06:16:43]     "exeErrorDiag": "",
[2026-03-13 06:16:43]     "pilotErrorCode": 0,
[2026-03-13 06:16:43]     "pilotErrorDiag": "",
[2026-03-13 06:16:43]  *** Listing of results directory ***
[2026-03-13 06:16:43] total 484756
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc    585013 Mar 12 05:15 pilot3.tar.gz
[2026-03-13 06:16:43] -rwx------. 1 boinc boinc     36322 Mar 12 05:16 runpilot2-wrapper.sh
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc      5111 Mar 12 05:16 queuedata.json
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc       100 Mar 13 00:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 06:16:43] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 00:34 run_atlas
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc       105 Mar 13 00:34 job.xml
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc      6391 Mar 13 00:34 init_data.xml
[2026-03-13 06:16:43] -rw-r--r--. 2 boinc boinc 227128400 Mar 13 00:34 EVNT.48966966._000019.pool.root.1
[2026-03-13 06:16:43] -rw-r--r--. 2 boinc boinc     15845 Mar 13 00:34 start_atlas.sh
[2026-03-13 06:16:43] drwxrwx--x. 2 boinc boinc        68 Mar 13 00:34 shared
[2026-03-13 06:16:43] -rw-r--r--. 2 boinc boinc    597527 Mar 13 00:34 input.tar.gz
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc         0 Mar 13 00:34 boinc_lockfile
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc      2568 Mar 13 00:34 pandaJob.out
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc   1006506 Mar 13 00:35 agis_schedconf.cvmfs.json
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc       415 Mar 13 00:35 workernode_map.json
[2026-03-13 06:16:43] drwx------. 5 boinc boinc      4096 Mar 13 00:35 pilot3
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc 258529091 Mar 13 06:14 HITS.48966968._000481.pool.root.1
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc       532 Mar 13 06:14 boinc_task_state.xml
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc      1031 Mar 13 06:15 memory_monitor_summary.json
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc   1511578 Mar 13 06:15 agis_ddmendpoints.agis.ALL.json
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc    564201 Mar 13 06:15 log.48966968._000481.job.log.tgz.1
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc      6330 Mar 13 06:15 heartbeat.json
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc        95 Mar 13 06:16 pilot_heartbeat.json
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc      8192 Mar 13 06:16 boinc_mmap_file
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc        29 Mar 13 06:16 wrapper_checkpoint.txt
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc      4880 Mar 13 06:16 pilotlog.txt
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc   2843002 Mar 13 06:16 log.48966968._000481.job.log.1
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc       357 Mar 13 06:16 output.list
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc       620 Mar 13 06:16 runtime_log
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc   3420160 Mar 13 06:16 result.tar.gz
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc      8816 Mar 13 06:16 runtime_log.err
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc       658 Mar 13 06:16 PjONDmiemK9n9Rq4apOajLDm4fhM0noT9bVooX4SDm79iLDmkZuPln.diag
[2026-03-13 06:16:43] -rw-r--r--. 1 boinc boinc     20731 Mar 13 06:16 stderr.txt
[2026-03-13 06:16:43] HITS file was successfully produced:
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc 258529091 Mar 13 06:14 shared/HITS.pool.root.1
[2026-03-13 06:16:43]  *** Contents of shared directory: ***
[2026-03-13 06:16:43] total 478220
[2026-03-13 06:16:43] -rw-r--r--. 2 boinc boinc 227128400 Mar 13 00:34 ATLAS.root_0
[2026-03-13 06:16:43] -rw-r--r--. 2 boinc boinc     15845 Mar 13 00:34 start_atlas.sh
[2026-03-13 06:16:43] -rw-r--r--. 2 boinc boinc    597527 Mar 13 00:34 input.tar.gz
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc 258529091 Mar 13 06:14 HITS.pool.root.1
[2026-03-13 06:16:43] -rw-------. 1 boinc boinc   3420160 Mar 13 06:16 result.tar.gz
06:16:45 (6076): run_atlas exited; CPU time 111867.170747
06:16:45 (6076): called boinc_finish(0)

</stderr_txt>
]]>

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