Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:06 (3663723): wrapper (7.7.26015): starting
00:02:06 (3663723): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 00:02:06] Arguments: --nthreads 8
[2026-03-12 00:02:06] Threads: 8
[2026-03-12 00:02:06] Checking for CVMFS
[2026-03-12 00:02:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 00:02:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 00:02:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 00:02:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 00:02:07] 2.13.3.0 9292 110943 473520 157181 2 362 36898984 39288833 19935 16776704 0 157475003 99.452 275447804 32556 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-12 00:02:07] CVMFS is ok
[2026-03-12 00:02:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 00:02:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 00:02:07] Further information can be found at the LHC@home message board.
[2026-03-12 00:02:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 00:02:07] Checking for apptainer binary...
[2026-03-12 00:02:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 00:02:07] Running /usr/bin/apptainer --version
[2026-03-12 00:02:08] apptainer version 1.4.5-2.el9
[2026-03-12 00:02:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 00:02:09] c-211-23.aglt2.org
[2026-03-12 00:02:09] apptainer works
[2026-03-12 00:02:09] Set ATHENA_PROC_NUMBER=8
[2026-03-12 00:02:09] Set ATHENA_CORE_NUMBER=8
[2026-03-12 00:02:09] Starting ATLAS job with PandaID=7036963392
[2026-03-12 00:02:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:17 (3663723): BOINC client no longer exists - exiting
00:20:17 (3663723): timer handler: client dead, exiting
00:31:34 (3924401): wrapper (7.7.26015): starting
00:31:34 (3924401): wrapper: running run_atlas (--nthreads 11)
[2026-03-12 00:31:34] Arguments: --nthreads 11
[2026-03-12 00:31:34] Threads: 11
[2026-03-12 00:31:34] This job has been restarted, cleaning up previous attempt
[2026-03-12 00:31:34] Checking for CVMFS
[2026-03-12 00:31:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 00:31:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 00:31:35] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 00:31:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 00:31:35] 2.13.3.0 9292 110973 466316 157183 1 64 36992327 39288833 16613 16776704 0 157571342 99.452 275451561 32556 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-12 00:31:35] CVMFS is ok
[2026-03-12 00:31:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 00:31:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 00:31:35] Further information can be found at the LHC@home message board.
[2026-03-12 00:31:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 00:31:35] Checking for apptainer binary...
[2026-03-12 00:31:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 00:31:35] Running /usr/bin/apptainer --version
[2026-03-12 00:31:35] apptainer version 1.4.5-2.el9
[2026-03-12 00:31:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 00:31:35] c-211-23.aglt2.org
[2026-03-12 00:31:35] apptainer works
[2026-03-12 00:31:35] Set ATHENA_PROC_NUMBER=11
[2026-03-12 00:31:35] Set ATHENA_CORE_NUMBER=11
[2026-03-12 00:31:35] Starting ATLAS job with PandaID=7036963392
[2026-03-12 00:31:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 12:57:21]  *** The last 200 lines of the pilot log: ***
[2026-03-12 12:57:21] 2026-03-12 16:56:24,983 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 12:57:21] 2026-03-12 16:56:24,983 | INFO     | log transfer has been attempted: DONE
[2026-03-12 12:57:21] 2026-03-12 16:56:24,983 | INFO     | job 7036963392 has finished - writing final server update
[2026-03-12 12:57:21] 2026-03-12 16:56:24,984 | INFO     | total number of processed events: 400 (read)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,002 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7036963392/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,003 | INFO     | extracted standard info from prmon json
[2026-03-12 12:57:21] 2026-03-12 16:56:25,003 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 12:57:21] 2026-03-12 16:56:25,003 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 12:57:21] 2026-03-12 16:56:25,004 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 12:57:21] 2026-03-12 16:56:25,004 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 12:57:21] 2026-03-12 16:56:25,022 | INFO     | fitting pss+swap vs Time
[2026-03-12 12:57:21] 2026-03-12 16:56:25,023 | INFO     | sum of square deviations: 121616744159.08188
[2026-03-12 12:57:21] 2026-03-12 16:56:25,038 | INFO     | sum of deviations: 316726501051.91797
[2026-03-12 12:57:21] 2026-03-12 16:56:25,038 | INFO     | mean x: 1773312222.081967
[2026-03-12 12:57:21] 2026-03-12 16:56:25,039 | INFO     | mean y: 2678634.418032787
[2026-03-12 12:57:21] 2026-03-12 16:56:25,039 | INFO     | intersect: -4615558593.162615
[2026-03-12 12:57:21] 2026-03-12 16:56:25,040 | INFO     | chi2: 2.517315557863808
[2026-03-12 12:57:21] 2026-03-12 16:56:25,041 | INFO     | sum of square deviations: 119141609072.37703
[2026-03-12 12:57:21] 2026-03-12 16:56:25,056 | INFO     | sum of deviations: 367683259564.92035
[2026-03-12 12:57:21] 2026-03-12 16:56:25,056 | INFO     | mean x: 1773312069.5859697
[2026-03-12 12:57:21] 2026-03-12 16:56:25,056 | INFO     | mean y: 2681755.7372764787
[2026-03-12 12:57:21] 2026-03-12 16:56:25,056 | INFO     | intersect: -5469941679.91812
[2026-03-12 12:57:21] 2026-03-12 16:56:25,057 | INFO     | chi2: 1.7171314878058908
[2026-03-12 12:57:21] 2026-03-12 16:56:25,057 | INFO     | current chi2=1.7171314878058908 (change=31.78719757871567 %)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,059 | INFO     | sum of square deviations: 116700244226.32706
[2026-03-12 12:57:21] 2026-03-12 16:56:25,076 | INFO     | sum of deviations: 364437770124.62054
[2026-03-12 12:57:21] 2026-03-12 16:56:25,077 | INFO     | mean x: 1773311917.0886426
[2026-03-12 12:57:21] 2026-03-12 16:56:25,077 | INFO     | mean y: 2681552.990304709
[2026-03-12 12:57:21] 2026-03-12 16:56:25,077 | INFO     | intersect: -5535111834.535503
[2026-03-12 12:57:21] 2026-03-12 16:56:25,078 | INFO     | chi2: 1.7167102111617232
[2026-03-12 12:57:21] 2026-03-12 16:56:25,078 | INFO     | current chi2=1.7167102111617232 (change=0.02453374404693235 %)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,079 | INFO     | right removable region: 721
[2026-03-12 12:57:21] 2026-03-12 16:56:25,080 | INFO     | sum of square deviations: 119141349212.37695
[2026-03-12 12:57:21] 2026-03-12 16:56:25,097 | INFO     | sum of deviations: 182003622853.33005
[2026-03-12 12:57:21] 2026-03-12 16:56:25,098 | INFO     | mean x: 1773312374.5859697
[2026-03-12 12:57:21] 2026-03-12 16:56:25,098 | INFO     | mean y: 2686913.9147180193
[2026-03-12 12:57:21] 2026-03-12 16:56:25,098 | INFO     | intersect: -2706274154.252867
[2026-03-12 12:57:21] 2026-03-12 16:56:25,099 | INFO     | chi2: 1.040792693803304
[2026-03-12 12:57:21] 2026-03-12 16:56:25,099 | INFO     | current chi2=1.040792693803304 (change=58.654659303559065 %)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,101 | INFO     | sum of square deviations: 116699768853.14838
[2026-03-12 12:57:21] 2026-03-12 16:56:25,121 | INFO     | sum of deviations: 139086732472.8504
[2026-03-12 12:57:21] 2026-03-12 16:56:25,122 | INFO     | mean x: 1773312527.0900278
[2026-03-12 12:57:21] 2026-03-12 16:56:25,122 | INFO     | mean y: 2689594.479224377
[2026-03-12 12:57:21] 2026-03-12 16:56:25,122 | INFO     | intersect: -2110804266.4768753
[2026-03-12 12:57:21] 2026-03-12 16:56:25,123 | INFO     | chi2: 0.9516484183486679
[2026-03-12 12:57:21] 2026-03-12 16:56:25,123 | INFO     | current chi2=0.9516484183486679 (change=8.565036628848905 %)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,124 | INFO     | left removable region: 20
[2026-03-12 12:57:21] 2026-03-12 16:56:25,157 | INFO     | sum of square deviations: 106810014126.94124
[2026-03-12 12:57:21] 2026-03-12 16:56:25,196 | INFO     | sum of deviations: 130149345707.15266
[2026-03-12 12:57:21] 2026-03-12 16:56:25,197 | INFO     | mean x: 1773312496.5948644
[2026-03-12 12:57:21] 2026-03-12 16:56:25,197 | INFO     | mean y: 2696479.764621969
[2026-03-12 12:57:21] 2026-03-12 16:56:25,197 | INFO     | intersect: -2158107102.6770387
[2026-03-12 12:57:21] 2026-03-12 16:56:25,205 | INFO     | chi2: 0.02024098172524607
[2026-03-12 12:57:21] 2026-03-12 16:56:25,205 | INFO     | current memory leak: 1.22 B/s (using 701 data points, chi2=0.02)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,206 | INFO     | could have reported an average CPU frequency of 2900 MHz (28 samples)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,207 | INFO     | ..............................
[2026-03-12 12:57:21] 2026-03-12 16:56:25,207 | INFO     | . Timing measurements:
[2026-03-12 12:57:21] 2026-03-12 16:56:25,207 | INFO     | . get job = 0 s
[2026-03-12 12:57:21] 2026-03-12 16:56:25,207 | INFO     | . initial setup = 1 s
[2026-03-12 12:57:21] 2026-03-12 16:56:25,207 | INFO     | . payload setup = 7 s
[2026-03-12 12:57:21] 2026-03-12 16:56:25,207 | INFO     | . stage-in = 0 s
[2026-03-12 12:57:21] 2026-03-12 16:56:25,207 | INFO     | . payload execution = 44654 s
[2026-03-12 12:57:21] 2026-03-12 16:56:25,216 | INFO     | . stage-out = 5 s
[2026-03-12 12:57:21] 2026-03-12 16:56:25,216 | INFO     | . log creation = 0 s
[2026-03-12 12:57:21] 2026-03-12 16:56:25,216 | INFO     | ..............................
[2026-03-12 12:57:21] 2026-03-12 16:56:25,889 | INFO     | 
[2026-03-12 12:57:21] 2026-03-12 16:56:25,889 | INFO     | job summary report
[2026-03-12 12:57:21] 2026-03-12 16:56:25,889 | INFO     | --------------------------------------------------
[2026-03-12 12:57:21] 2026-03-12 16:56:25,889 | INFO     | PanDA job id: 7036963392
[2026-03-12 12:57:21] 2026-03-12 16:56:25,889 | INFO     | task id: 48838605
[2026-03-12 12:57:21] 2026-03-12 16:56:25,890 | INFO     | errors: (none)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,890 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 12:57:21] 2026-03-12 16:56:25,890 | INFO     | pilot state: finished 
[2026-03-12 12:57:21] 2026-03-12 16:56:25,890 | INFO     | transexitcode: 0
[2026-03-12 12:57:21] 2026-03-12 16:56:25,890 | INFO     | exeerrorcode: 0
[2026-03-12 12:57:21] 2026-03-12 16:56:25,890 | INFO     | exeerrordiag: 
[2026-03-12 12:57:21] 2026-03-12 16:56:25,891 | INFO     | exitcode: 0
[2026-03-12 12:57:21] 2026-03-12 16:56:25,891 | INFO     | exitmsg: OK
[2026-03-12 12:57:21] 2026-03-12 16:56:25,891 | INFO     | cpuconsumptiontime: 92258 s
[2026-03-12 12:57:21] 2026-03-12 16:56:25,891 | INFO     | nevents: 400
[2026-03-12 12:57:21] 2026-03-12 16:56:25,891 | INFO     | neventsw: 0
[2026-03-12 12:57:21] 2026-03-12 16:56:25,891 | INFO     | pid: 3943746
[2026-03-12 12:57:21] 2026-03-12 16:56:25,891 | INFO     | pgrp: 3943746
[2026-03-12 12:57:21] 2026-03-12 16:56:25,900 | INFO     | corecount: 11
[2026-03-12 12:57:21] 2026-03-12 16:56:25,900 | INFO     | event service: False
[2026-03-12 12:57:21] 2026-03-12 16:56:25,900 | INFO     | sizes: {0: 2279754, 1: 2280215, 2: 2280215, 44664: 2324963, 44665: 2324962, 44672: 2334200, 44675: 2334338}
[2026-03-12 12:57:21] 2026-03-12 16:56:25,900 | INFO     | --------------------------------------------------
[2026-03-12 12:57:21] 2026-03-12 16:56:25,901 | INFO     | 
[2026-03-12 12:57:21] 2026-03-12 16:56:25,901 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-03-12 12:57:21] 2026-03-12 16:56:25,967 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,967 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,967 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,968 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,968 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,968 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,968 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,968 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,968 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,969 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,969 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,969 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,969 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,969 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,970 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,970 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,970 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 12:57:21] 2026-03-12 16:56:25,970 | INFO     | job 7036963392 has completed (purged errors)
[2026-03-12 12:57:21] 2026-03-12 16:56:25,971 | INFO     | overall cleanup function is called
[2026-03-12 12:57:21] 2026-03-12 16:56:26,981 | INFO     | --- collectZombieJob: --- 10, [3943746]
[2026-03-12 12:57:21] 2026-03-12 16:56:26,981 | INFO     | zombie collector waiting for pid 3943746
[2026-03-12 12:57:21] 2026-03-12 16:56:26,993 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 12:57:21] 2026-03-12 16:56:26,993 | INFO     | collected zombie processes
[2026-03-12 12:57:21] 2026-03-12 16:56:26,993 | INFO     | will attempt to kill all subprocesses of pid=3943746
[2026-03-12 12:57:21] 2026-03-12 16:56:28,596 | INFO     | process IDs to be killed: [3943746] (in reverse order)
[2026-03-12 12:57:21] 2026-03-12 16:56:28,775 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 12:57:21] 2026-03-12 16:56:28,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 12:57:21] 2026-03-12 16:56:28,817 | INFO     | did not find any defunct processes belonging to 3943746
[2026-03-12 12:57:21] 2026-03-12 16:56:28,872 | INFO     | did not find any defunct processes belonging to 3943746
[2026-03-12 12:57:21] 2026-03-12 16:56:28,872 | INFO     | ready for new job
[2026-03-12 12:57:21] 2026-03-12 16:56:28,872 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 12:57:21] 2026-03-12 16:56:28,884 | INFO     | **************************************
[2026-03-12 12:57:21] 2026-03-12 16:56:28,884 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 12:57:21] 2026-03-12 16:56:28,885 | INFO     | **************************************
[2026-03-12 12:57:21] 2026-03-12 16:56:28,885 | INFO     | 
[2026-03-12 12:57:21] 2026-03-12 16:56:28,895 | INFO     | architecture information:
[2026-03-12 12:57:21] 2026-03-12 16:56:28,895 | INFO     | executing command: cat /etc/os-release
[2026-03-12 12:57:21] 2026-03-12 16:56:29,058 | INFO     | cat /etc/os-release:
[2026-03-12 12:57:21] NAME="CentOS Linux"
[2026-03-12 12:57:21] VERSION="7 (Core)"
[2026-03-12 12:57:21] ID="centos"
[2026-03-12 12:57:21] ID_LIKE="rhel fedora"
[2026-03-12 12:57:21] VERSION_ID="7"
[2026-03-12 12:57:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 12:57:21] ANSI_COLOR="0;31"
[2026-03-12 12:57:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 12:57:21] HOME_URL="https://www.centos.org/"
[2026-03-12 12:57:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 12:57:21] 
[2026-03-12 12:57:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 12:57:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 12:57:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 12:57:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 12:57:21] 
[2026-03-12 12:57:21] 2026-03-12 16:56:29,059 | INFO     | **************************************
[2026-03-12 12:57:21] 2026-03-12 16:56:29,623 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-03-12 12:57:21] 2026-03-12 16:56:29,716 | INFO     | sufficient remaining disk space (52759101440 B)
[2026-03-12 12:57:21] 2026-03-12 16:56:29,716 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 12:57:21] 2026-03-12 16:56:29,717 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 12:57:21] 2026-03-12 16:56:29,717 | INFO     | update_server=False
[2026-03-12 12:57:21] 2026-03-12 16:56:29,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 12:57:21] 2026-03-12 16:56:29,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 12:57:21] 2026-03-12 16:56:30,123 | INFO     | all data control threads have been joined
[2026-03-12 12:57:21] 2026-03-12 16:56:30,259 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 12:57:21] 2026-03-12 16:56:30,259 | INFO     | aborting loop
[2026-03-12 12:57:21] 2026-03-12 16:56:30,528 | INFO     | all payload control threads have been joined
[2026-03-12 12:57:21] 2026-03-12 16:56:30,583 | INFO     | all job control threads have been joined
[2026-03-12 12:57:21] 2026-03-12 16:56:30,762 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:30,780 | INFO     | [job] retrieve thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:30,783 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:30,783 | INFO     | [job] validate thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:30,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 12:57:21] 2026-03-12 16:56:30,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 12:57:21] 2026-03-12 16:56:31,182 | INFO     | [payload] failed_post thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:31,214 | INFO     | [data] control thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:31,284 | INFO     | [job] job monitor thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:31,295 | INFO     | [data] copytool_in thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:31,307 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:31,490 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:31,548 | INFO     | [payload] control thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:31,632 | INFO     | [job] control thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:31,917 | INFO     | [payload] validate_post thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:31,942 | INFO     | [job] queue monitor thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:32,839 | INFO     | [data] copytool_out thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:33,822 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 12:57:21] 2026-03-12 16:56:59,724 | INFO     | PID=3935744 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 12:57:21] 2026-03-12 16:56:59,725 | INFO     | .. there are 33 such processes running
[2026-03-12 12:57:21] 2026-03-12 16:56:59,726 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 12:57:21] 2026-03-12 16:56:59,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 12:57:21] 2026-03-12 16:56:59,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 12:57:21] 2026-03-12 16:57:13,722 | INFO     | [monitor] cgroup control has ended
[2026-03-12 12:57:21] 2026-03-12 16:57:14,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687094490944)>', '<ExcThread(monitor, started 139686739691264)>']
[2026-03-12 12:57:21] 2026-03-12 16:57:14,840 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 12:57:21] 2026-03-12 16:57:14,840 | INFO     | [monitor] control thread has ended
[2026-03-12 12:57:21] 2026-03-12 16:57:19,419 | INFO     | all workflow threads have been joined
[2026-03-12 12:57:21] 2026-03-12 16:57:19,469 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 12:57:21] 2026-03-12 16:57:19,492 | INFO     | traces error code: 0
[2026-03-12 12:57:21] 2026-03-12 16:57:19,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 12:57:21] 2026-03-12 16:57:19,669 [wrapper] ==== pilot stdout END ====
[2026-03-12 12:57:21] 2026-03-12 16:57:19,673 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 12:57:21] 2026-03-12 16:57:19,676 [wrapper] pilotpid: 3935744
[2026-03-12 12:57:21] 2026-03-12 16:57:19,679 [wrapper] Pilot exit status: 0
[2026-03-12 12:57:21] 2026-03-12 16:57:19,803 [wrapper] pandaids: 7036963392 7036963392
[2026-03-12 12:57:21] 2026-03-12 16:57:20,030 [wrapper] cleanup supervisor_pilot 2252536 3935745
[2026-03-12 12:57:21] 2026-03-12 16:57:20,057 [wrapper] Test setup, not cleaning
[2026-03-12 12:57:21] 2026-03-12 16:57:20,109 [wrapper] apfmon messages muted
[2026-03-12 12:57:21] 2026-03-12 16:57:20,129 [wrapper] ==== wrapper stdout END ====
[2026-03-12 12:57:21] 2026-03-12 16:57:20,213 [wrapper] ==== wrapper stderr END ====
[2026-03-12 12:57:21]  *** Error codes and diagnostics ***
[2026-03-12 12:57:21]     "exeErrorCode": 0,
[2026-03-12 12:57:21]     "exeErrorDiag": "",
[2026-03-12 12:57:21]     "pilotErrorCode": 0,
[2026-03-12 12:57:21]     "pilotErrorDiag": "",
[2026-03-12 12:57:21]  *** Listing of results directory ***
[2026-03-12 12:57:21] total 785672
[2026-03-12 12:57:21] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas    584627 Mar  3 20:08 pilot3.tar.gz
[2026-03-12 12:57:21] -rwx------. 1 boincer umatlas     36322 Mar  3 20:08 runpilot2-wrapper.sh
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas      5111 Mar  3 20:08 queuedata.json
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas       100 Mar 12 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 12:57:21] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 12 00:02 run_atlas
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas       105 Mar 12 00:02 job.xml
[2026-03-12 12:57:21] -rw-r--r--. 3 boincer umatlas 285593299 Mar 12 00:02 EVNT.48343768._000158.pool.root.1
[2026-03-12 12:57:21] -rw-r--r--. 3 boincer umatlas 285593299 Mar 12 00:02 ATLAS.root_0
[2026-03-12 12:57:21] -rw-r--r--. 2 boincer umatlas     15845 Mar 12 00:02 start_atlas.sh
[2026-03-12 12:57:21] drwxrwx--x. 2 boincer umatlas      4096 Mar 12 00:02 shared
[2026-03-12 12:57:21] -rw-r--r--. 2 boincer umatlas    597952 Mar 12 00:02 input.tar.gz
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas         0 Mar 12 00:02 boinc_lockfile
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas      2564 Mar 12 00:31 pandaJob.out
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas        57 Mar 12 00:31 setup.sh.local
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas   1006235 Mar 12 00:31 agis_schedconf.cvmfs.json
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas       442 Mar 12 00:31 workernode_map.json
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas 216952696 Mar 12 12:54 HITS.48838605._004005.pool.root.1
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas       531 Mar 12 12:55 boinc_task_state.xml
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas      6524 Mar 12 12:55 init_data.xml
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas      1057 Mar 12 12:56 memory_monitor_summary.json
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas   1511578 Mar 12 12:56 agis_ddmendpoints.agis.ALL.json
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas    867640 Mar 12 12:56 log.48838605._004005.job.log.tgz.1
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas      6408 Mar 12 12:56 heartbeat.json
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas        28 Mar 12 12:56 wrapper_checkpoint.txt
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas      8192 Mar 12 12:56 boinc_mmap_file
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas        96 Mar 12 12:56 pilot_heartbeat.json
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas      4820 Mar 12 12:57 pilotlog.txt
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas   5359164 Mar 12 12:57 log.48838605._004005.job.log.1
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas       357 Mar 12 12:57 output.list
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas       620 Mar 12 12:57 runtime_log
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas   6246400 Mar 12 12:57 result.tar.gz
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas      9429 Mar 12 12:57 runtime_log.err
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas       786 Mar 12 12:57 7vuLDmIupH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmbfILDmlmoMyn.diag
[2026-03-12 12:57:21] -rw-r--r--. 1 boincer umatlas     23440 Mar 12 12:57 stderr.txt
[2026-03-12 12:57:21] HITS file was successfully produced:
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas 216952696 Mar 12 12:54 shared/HITS.pool.root.1
[2026-03-12 12:57:21]  *** Contents of shared directory: ***
[2026-03-12 12:57:21] total 497472
[2026-03-12 12:57:21] -rw-r--r--. 3 boincer umatlas 285593299 Mar 12 00:02 ATLAS.root_0
[2026-03-12 12:57:21] -rw-r--r--. 2 boincer umatlas     15845 Mar 12 00:02 start_atlas.sh
[2026-03-12 12:57:21] -rw-r--r--. 2 boincer umatlas    597952 Mar 12 00:02 input.tar.gz
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas 216952696 Mar 12 12:54 HITS.pool.root.1
[2026-03-12 12:57:21] -rw-------. 1 boincer umatlas   6246400 Mar 12 12:57 result.tar.gz
12:57:22 (3924401): run_atlas exited; CPU time 94886.341714
12:57:22 (3924401): called boinc_finish(0)

</stderr_txt>
]]>

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