Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:47:32 (3586600): wrapper (7.7.26015): starting
16:47:32 (3586600): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 16:47:32] Arguments: --nthreads 4
[2026-03-12 16:47:32] Threads: 4
[2026-03-12 16:47:32] Checking for CVMFS
[2026-03-12 16:47:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 16:47:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 16:47:32] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 16:47:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 16:47:33] 2.9.2.0 37475 21557 105892 157205 3 50 30073955 36864000 0 130560 0 9879991 99.984 815532 13280 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 16:47:33] CVMFS is ok
[2026-03-12 16:47:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 16:47:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 16:47:33] Further information can be found at the LHC@home message board.
[2026-03-12 16:47:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 16:47:33] Checking for apptainer binary...
[2026-03-12 16:47:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 16:47:33] Running /usr/bin/apptainer --version
[2026-03-12 16:47:33] apptainer version 1.4.1-1.1
[2026-03-12 16:47:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 16:47:33] cosA131
[2026-03-12 16:47:33] apptainer works
[2026-03-12 16:47:33] Set ATHENA_PROC_NUMBER=4
[2026-03-12 16:47:33] Set ATHENA_CORE_NUMBER=4
[2026-03-12 16:47:33] Starting ATLAS job with PandaID=7036924614
[2026-03-12 16:47:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 18:12:16]  *** The last 200 lines of the pilot log: ***
[2026-03-12 18:12:16] 2026-03-12 17:11:43,862 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 18:12:16] 2026-03-12 17:11:43,862 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 18:12:16] 2026-03-12 17:11:43,862 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 18:12:16] 2026-03-12 17:11:43,862 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 18:12:16] 2026-03-12 17:11:43,862 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 18:12:16] 2026-03-12 17:11:43,862 | INFO     | job 7036924614 has completed (purged errors)
[2026-03-12 18:12:16] 2026-03-12 17:11:43,862 | INFO     | overall cleanup function is called
[2026-03-12 18:12:16] 2026-03-12 17:11:44,867 | INFO     | --- collectZombieJob: --- 10, [3595235]
[2026-03-12 18:12:16] 2026-03-12 17:11:44,867 | INFO     | zombie collector waiting for pid 3595235
[2026-03-12 18:12:16] 2026-03-12 17:11:44,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 18:12:16] 2026-03-12 17:11:44,867 | INFO     | collected zombie processes
[2026-03-12 18:12:16] 2026-03-12 17:11:44,867 | INFO     | will attempt to kill all subprocesses of pid=3595235
[2026-03-12 18:12:16] 2026-03-12 17:11:44,910 | INFO     | process IDs to be killed: [3595235] (in reverse order)
[2026-03-12 18:12:16] 2026-03-12 17:11:44,944 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 18:12:16] 2026-03-12 17:11:44,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 18:12:16] 2026-03-12 17:11:44,946 | INFO     | did not find any defunct processes belonging to 3595235
[2026-03-12 18:12:16] 2026-03-12 17:11:44,947 | INFO     | did not find any defunct processes belonging to 3595235
[2026-03-12 18:12:16] 2026-03-12 17:11:44,948 | INFO     | ready for new job
[2026-03-12 18:12:16] 2026-03-12 17:11:44,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 18:12:16] 2026-03-12 17:11:44,948 | INFO     | **************************************
[2026-03-12 18:12:16] 2026-03-12 17:11:44,948 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 18:12:16] 2026-03-12 17:11:44,948 | INFO     | **************************************
[2026-03-12 18:12:16] 2026-03-12 17:11:44,948 | INFO     | 
[2026-03-12 18:12:16] 2026-03-12 17:11:44,949 | INFO     | architecture information:
[2026-03-12 18:12:16] 2026-03-12 17:11:44,949 | INFO     | executing command: cat /etc/os-release
[2026-03-12 18:12:16] 2026-03-12 17:11:44,963 | INFO     | cat /etc/os-release:
[2026-03-12 18:12:16] NAME="CentOS Linux"
[2026-03-12 18:12:16] VERSION="7 (Core)"
[2026-03-12 18:12:16] ID="centos"
[2026-03-12 18:12:16] ID_LIKE="rhel fedora"
[2026-03-12 18:12:16] VERSION_ID="7"
[2026-03-12 18:12:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 18:12:16] ANSI_COLOR="0;31"
[2026-03-12 18:12:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 18:12:16] HOME_URL="https://www.centos.org/"
[2026-03-12 18:12:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 18:12:16] 
[2026-03-12 18:12:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 18:12:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 18:12:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 18:12:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 18:12:16] 
[2026-03-12 18:12:16] 2026-03-12 17:11:44,964 | INFO     | **************************************
[2026-03-12 18:12:16] 2026-03-12 17:11:45,467 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 18:12:16] 2026-03-12 17:11:45,486 | INFO     | sufficient remaining disk space (328404566016 B)
[2026-03-12 18:12:16] 2026-03-12 17:11:45,486 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 18:12:16] 2026-03-12 17:11:45,486 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 18:12:16] 2026-03-12 17:11:45,486 | INFO     | update_server=False
[2026-03-12 18:12:16] 2026-03-12 17:11:45,486 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 18:12:16] 2026-03-12 17:11:45,486 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 18:12:16] 2026-03-12 17:11:45,486 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 18:12:16] 2026-03-12 17:11:45,487 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 18:12:16] 2026-03-12 17:11:45,487 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 18:12:16] 2026-03-12 17:11:45,487 | INFO     | aborting loop
[2026-03-12 18:12:16] 2026-03-12 17:11:45,501 | INFO     | job.realtimelogging is not enabled
[2026-03-12 18:12:16] 2026-03-12 17:11:45,762 | INFO     | all data control threads have been joined
[2026-03-12 18:12:16] 2026-03-12 17:11:45,863 | INFO     | all payload control threads have been joined
[2026-03-12 18:12:16] 2026-03-12 17:11:46,266 | INFO     | all job control threads have been joined
[2026-03-12 18:12:16] 2026-03-12 17:11:46,492 | INFO     | [job] retrieve thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:46,492 | INFO     | [job] queue monitor thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:46,493 | INFO     | [job] job monitor thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:46,502 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:46,507 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:46,556 | INFO     | [data] copytool_in thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:46,654 | INFO     | [payload] validate_post thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:46,768 | INFO     | [data] control thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:46,869 | INFO     | [payload] control thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:47,272 | INFO     | [job] control thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:47,493 | INFO     | [data] copytool_out thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:47,683 | INFO     | [job] validate thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:47,723 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:47,779 | INFO     | [payload] failed_post thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:47,939 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:49,494 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 18:12:16] 2026-03-12 17:11:52,612 | INFO     | [monitor] cgroup control has ended
[2026-03-12 18:12:16] 2026-03-12 17:11:53,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140309760481088)>', '<ExcThread(monitor, started 140308956292864)>']
[2026-03-12 18:12:16] 2026-03-12 17:11:58,381 | INFO     | all workflow threads have been joined
[2026-03-12 18:12:16] 2026-03-12 17:11:58,381 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 18:12:16] 2026-03-12 17:11:58,382 | INFO     | traces error code: 0
[2026-03-12 18:12:16] 2026-03-12 17:11:58,382 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 18:12:16] 2026-03-12 17:12:16,559 | INFO     | PID=3590711 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 18:12:16] 2026-03-12 17:12:16,559 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 18:12:16] 2026-03-12 17:12:16,559 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 18:12:16] 2026-03-12 17:12:16,559 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 18:12:16] 2026-03-12 17:12:16,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 18:12:16] 2026-03-12 17:12:16,560 | CRITICAL | thread 'MainThread' is not alive
[2026-03-12 18:12:16] 2026-03-12 17:12:16,560 | INFO     | [monitor] control thread has ended
[2026-03-12 18:12:16] 2026-03-12 17:12:16,635 [wrapper] ==== pilot stdout END ====
[2026-03-12 18:12:16] 2026-03-12 17:12:16,639 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 18:12:16] 2026-03-12 17:12:16,643 [wrapper] pilotpid: 3590711
[2026-03-12 18:12:16] 2026-03-12 17:12:16,648 [wrapper] Pilot exit status: 0
[2026-03-12 18:12:16] 2026-03-12 17:12:16,660 [wrapper] pandaids: 7036924614
[2026-03-12 18:12:16] 2026-03-12 17:12:16,681 [wrapper] cleanup supervisor_pilot 3600548 3590712
[2026-03-12 18:12:16] 2026-03-12 17:12:16,685 [wrapper] Test setup, not cleaning
[2026-03-12 18:12:16] 2026-03-12 17:12:16,689 [wrapper] apfmon messages muted
[2026-03-12 18:12:16] 2026-03-12 17:12:16,692 [wrapper] ==== wrapper stdout END ====
[2026-03-12 18:12:16] 2026-03-12 17:12:16,696 [wrapper] ==== wrapper stderr END ====
[2026-03-12 18:12:16]  *** Error codes and diagnostics ***
[2026-03-12 18:12:16]     "exeErrorCode": 0,
[2026-03-12 18:12:16]     "exeErrorDiag": "",
[2026-03-12 18:12:16]     "pilotErrorCode": 0,
[2026-03-12 18:12:16]     "pilotErrorDiag": "",
[2026-03-12 18:12:16]  *** Listing of results directory ***
[2026-03-12 18:12:16] total 499260
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc    584627 Mar  4 01:25 pilot3.tar.gz
[2026-03-12 18:12:16] -rwx------ 1 boinc boinc     36322 Mar  4 01:32 runpilot2-wrapper.sh
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc      5111 Mar  4 01:33 queuedata.json
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc       100 Mar 12 16:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 18:12:16] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 16:47 run_atlas
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc       105 Mar 12 16:47 job.xml
[2026-03-12 18:12:16] -rw-r--r-- 2 boinc boinc 287050680 Mar 12 16:47 EVNT.48343768._000122.pool.root.1
[2026-03-12 18:12:16] -rw-r--r-- 2 boinc boinc    597963 Mar 12 16:47 input.tar.gz
[2026-03-12 18:12:16] -rw-r--r-- 2 boinc boinc     15845 Mar 12 16:47 start_atlas.sh
[2026-03-12 18:12:16] drwxrwx--x 2 boinc boinc      4096 Mar 12 16:47 shared
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc         0 Mar 12 16:47 boinc_setup_complete
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc      6377 Mar 12 16:47 init_data.xml
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc         0 Mar 12 16:47 boinc_lockfile
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc      2564 Mar 12 16:47 pandaJob.out
[2026-03-12 18:12:16] -rw------- 1 boinc boinc   1006536 Mar 12 16:47 agis_schedconf.cvmfs.json
[2026-03-12 18:12:16] -rw------- 1 boinc boinc   1511578 Mar 12 16:47 agis_ddmendpoints.agis.ALL.json
[2026-03-12 18:12:16] -rw------- 1 boinc boinc       428 Mar 12 16:47 workernode_map.json
[2026-03-12 18:12:16] drwx------ 5 boinc boinc      4096 Mar 12 16:47 pilot3
[2026-03-12 18:12:16] -rw------- 1 boinc boinc 218260180 Mar 12 18:11 HITS.48838605._003162.pool.root.1
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc       529 Mar 12 18:11 boinc_task_state.xml
[2026-03-12 18:12:16] -rw------- 1 boinc boinc      1035 Mar 12 18:11 memory_monitor_summary.json
[2026-03-12 18:12:16] -rw------- 1 boinc boinc    268172 Mar 12 18:11 log.48838605._003162.job.log.tgz.1
[2026-03-12 18:12:16] -rw------- 1 boinc boinc      6317 Mar 12 18:11 heartbeat.json
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc      8192 Mar 12 18:11 boinc_mmap_file
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc        27 Mar 12 18:11 wrapper_checkpoint.txt
[2026-03-12 18:12:16] -rw------- 1 boinc boinc       817 Mar 12 18:12 pilotlog.txt
[2026-03-12 18:12:16] -rw------- 1 boinc boinc        95 Mar 12 18:12 pilot_heartbeat.json
[2026-03-12 18:12:16] -rw------- 1 boinc boinc    736627 Mar 12 18:12 log.48838605._003162.job.log.1
[2026-03-12 18:12:16] -rw------- 1 boinc boinc       357 Mar 12 18:12 output.list
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc       620 Mar 12 18:12 runtime_log
[2026-03-12 18:12:16] -rw------- 1 boinc boinc   1024000 Mar 12 18:12 result.tar.gz
[2026-03-12 18:12:16] -rw------- 1 boinc boinc       658 Mar 12 18:12 zN0KDmiLpH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmUfGLDmUA3Qxm.diag
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc      8901 Mar 12 18:12 runtime_log.err
[2026-03-12 18:12:16] -rw-r--r-- 1 boinc boinc     11500 Mar 12 18:12 stderr.txt
[2026-03-12 18:12:16] HITS file was successfully produced:
[2026-03-12 18:12:16] -rw------- 1 boinc boinc 218260180 Mar 12 18:11 shared/HITS.pool.root.1
[2026-03-12 18:12:16]  *** Contents of shared directory: ***
[2026-03-12 18:12:16] total 495080
[2026-03-12 18:12:16] -rw-r--r-- 2 boinc boinc 287050680 Mar 12 16:47 ATLAS.root_0
[2026-03-12 18:12:16] -rw-r--r-- 2 boinc boinc    597963 Mar 12 16:47 input.tar.gz
[2026-03-12 18:12:16] -rw-r--r-- 2 boinc boinc     15845 Mar 12 16:47 start_atlas.sh
[2026-03-12 18:12:16] -rw------- 1 boinc boinc 218260180 Mar 12 18:11 HITS.pool.root.1
[2026-03-12 18:12:16] -rw------- 1 boinc boinc   1024000 Mar 12 18:12 result.tar.gz
18:12:18 (3586600): run_atlas exited; CPU time 19000.195422
18:12:18 (3586600): called boinc_finish(0)

</stderr_txt>
]]>

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