Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:30:03 (3485778): wrapper (7.7.26015): starting
16:30:03 (3485778): wrapper: running run_atlas (--nthreads 3)
[2026-03-12 16:30:03] Arguments: --nthreads 3
[2026-03-12 16:30:03] Threads: 3
[2026-03-12 16:30:03] Checking for CVMFS
[2026-03-12 16:30:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 16:30:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 16:30:04] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 16:30:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 16:30:04] 2.9.2.0 3444380 393 57572 157205 3 50 26992013 36864000 0 130560 0 116922 99.978 15066 30375 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 16:30:04] CVMFS is ok
[2026-03-12 16:30:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 16:30:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 16:30:04] Further information can be found at the LHC@home message board.
[2026-03-12 16:30:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 16:30:04] Checking for apptainer binary...
[2026-03-12 16:30:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 16:30:04] Running /usr/bin/apptainer --version
[2026-03-12 16:30:04] apptainer version 1.4.1-1.1
[2026-03-12 16:30:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 16:30:04] itA179
[2026-03-12 16:30:04] apptainer works
[2026-03-12 16:30:04] Set ATHENA_PROC_NUMBER=3
[2026-03-12 16:30:04] Set ATHENA_CORE_NUMBER=3
[2026-03-12 16:30:04] Starting ATLAS job with PandaID=7050114005
[2026-03-12 16:30:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 18:08:32]  *** The last 200 lines of the pilot log: ***
[2026-03-12 18:08:32]  guid=b6702005-6bcb-404d-8897-8beb4df7caf1
[2026-03-12 18:08:32]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-12 18:08:32]  is_altstaged=None
[2026-03-12 18:08:32]  is_tar=False
[2026-03-12 18:08:32]  lfn=log.48967011._013983.job.log.tgz.1
[2026-03-12 18:08:32]  mtime=0
[2026-03-12 18:08:32]  protocol_id=None
[2026-03-12 18:08:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 18:08:32]  replicas=None
[2026-03-12 18:08:32]  scope=mc23_13p6TeV
[2026-03-12 18:08:32]  status=None
[2026-03-12 18:08:32]  status_code=0
[2026-03-12 18:08:32]  storage_token=
[2026-03-12 18:08:32]  surl=/local/data/boinc/slots/0/PanDA_Pilot-7050114005/log.48967011._013983.job.log.tgz.1
[2026-03-12 18:08:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/58/log.48967011._013983.job.log.tgz.1
[2026-03-12 18:08:32]  workdir=None
[2026-03-12 18:08:32] ]
[2026-03-12 18:08:32] 2026-03-12 17:07:58,748 | INFO     | transferring file log.48967011._013983.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-7050114005/log.48967011._013983.job.log.tgz.1 to /local/data/boinc/
[2026-03-12 18:08:32] 2026-03-12 17:07:58,748 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-7050114005/log.48967011._013983.job.log.tgz.1 /local/data/boinc/slots/0/log.48967011._0139
[2026-03-12 18:08:32] 2026-03-12 17:07:58,760 | INFO     | adding to output.list: log.48967011._013983.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/58/log.48967011._013983.job.log.tg
[2026-03-12 18:08:32] 2026-03-12 17:07:58,761 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 18:08:32] 2026-03-12 17:07:58,761 | INFO     | summary of transferred files:
[2026-03-12 18:08:32] 2026-03-12 17:07:58,761 | INFO     |  -- lfn=log.48967011._013983.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 18:08:32] 2026-03-12 17:07:58,761 | INFO     | stage-out finished correctly
[2026-03-12 18:08:32] 2026-03-12 17:07:58,790 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 18:08:32] 2026-03-12 17:07:58,967 | INFO     | time since job start (5865s) is within the limit (345600.0s)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,305 | INFO     | job 7050114005 has state=finished
[2026-03-12 18:08:32] 2026-03-12 17:07:59,305 | INFO     | preparing for final server update for job 7050114005 in state='finished'
[2026-03-12 18:08:32] 2026-03-12 17:07:59,305 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-7050114005/jobReport.json
[2026-03-12 18:08:32] 2026-03-12 17:07:59,306 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-03-12 18:08:32] 2026-03-12 17:07:59,306 | INFO     | this job has now completed (state=finished)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,306 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,306 | INFO     | log transfer has been attempted: DONE
[2026-03-12 18:08:32] 2026-03-12 17:07:59,306 | INFO     | job 7050114005 has finished - writing final server update
[2026-03-12 18:08:32] 2026-03-12 17:07:59,307 | INFO     | total number of processed events: 400 (read)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,308 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7050114005/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,308 | INFO     | extracted standard info from prmon json
[2026-03-12 18:08:32] 2026-03-12 17:07:59,308 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 18:08:32] 2026-03-12 17:07:59,308 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 18:08:32] 2026-03-12 17:07:59,308 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 18:08:32] 2026-03-12 17:07:59,308 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 18:08:32] 2026-03-12 17:07:59,309 | INFO     | fitting pss+swap vs Time
[2026-03-12 18:08:32] 2026-03-12 17:07:59,309 | INFO     | sum of square deviations: 218571540.0
[2026-03-12 18:08:32] 2026-03-12 17:07:59,309 | INFO     | sum of deviations: -15814908800.0
[2026-03-12 18:08:32] 2026-03-12 17:07:59,309 | INFO     | mean x: 1773332419.0
[2026-03-12 18:08:32] 2026-03-12 17:07:59,309 | INFO     | mean y: 2445744.9325842694
[2026-03-12 18:08:32] 2026-03-12 17:07:59,309 | INFO     | intersect: 128313251802.1548
[2026-03-12 18:08:32] 2026-03-12 17:07:59,309 | INFO     | chi2: 0.09801002074849577
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | current memory leak: -72.36 B/s (using 89 data points, chi2=0.10)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | could have reported an average CPU frequency of 3813 MHz (7 samples)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | ..............................
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | . Timing measurements:
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | . get job = 0 s
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | . initial setup = 3 s
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | . payload setup = 2 s
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | . stage-in = 0 s
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | . payload execution = 5846 s
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | . stage-out = 0 s
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | . log creation = 0 s
[2026-03-12 18:08:32] 2026-03-12 17:07:59,310 | INFO     | ..............................
[2026-03-12 18:08:32] 2026-03-12 17:07:59,433 | INFO     | 
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | job summary report
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | --------------------------------------------------
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | PanDA job id: 7050114005
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | task id: 48967011
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | errors: (none)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | pilot state: finished 
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | transexitcode: 0
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | exeerrorcode: 0
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | exeerrordiag: 
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | exitcode: 0
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | exitmsg: OK
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | cpuconsumptiontime: 16900 s
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | nevents: 400
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | neventsw: 0
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | pid: 3494250
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | pgrp: 3494250
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | corecount: 3
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | event service: False
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | sizes: {0: 2280245, 10: 2280245, 5853: 2307118, 5855: 2316316}
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | --------------------------------------------------
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | 
[2026-03-12 18:08:32] 2026-03-12 17:07:59,434 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-03-12 18:08:32] 2026-03-12 17:07:59,448 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 18:08:32] 2026-03-12 17:07:59,449 | INFO     | job 7050114005 has completed (purged errors)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,450 | INFO     | overall cleanup function is called
[2026-03-12 18:08:32] 2026-03-12 17:07:59,545 | WARNING  | process 3494250 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 18:08:32] 2026-03-12 17:07:59,573 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 18:08:32] 2026-03-12 17:07:59,609 | INFO     | number of running child processes to parent process 3494250: 1
[2026-03-12 18:08:32] 2026-03-12 17:07:59,609 | INFO     | maximum number of monitored processes: 6
[2026-03-12 18:08:32] 2026-03-12 17:07:59,609 | INFO     | aborting job monitoring since job object (job id=7050114005) has expired
[2026-03-12 18:08:32] 2026-03-12 17:08:00,456 | INFO     | --- collectZombieJob: --- 10, [3494250]
[2026-03-12 18:08:32] 2026-03-12 17:08:00,456 | INFO     | zombie collector waiting for pid 3494250
[2026-03-12 18:08:32] 2026-03-12 17:08:00,456 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 18:08:32] 2026-03-12 17:08:00,456 | INFO     | collected zombie processes
[2026-03-12 18:08:32] 2026-03-12 17:08:00,456 | INFO     | will attempt to kill all subprocesses of pid=3494250
[2026-03-12 18:08:32] 2026-03-12 17:08:00,497 | INFO     | process IDs to be killed: [3494250] (in reverse order)
[2026-03-12 18:08:32] 2026-03-12 17:08:00,520 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 18:08:32] 2026-03-12 17:08:00,520 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 18:08:32] 2026-03-12 17:08:00,521 | INFO     | did not find any defunct processes belonging to 3494250
[2026-03-12 18:08:32] 2026-03-12 17:08:00,522 | INFO     | did not find any defunct processes belonging to 3494250
[2026-03-12 18:08:32] 2026-03-12 17:08:00,523 | INFO     | ready for new job
[2026-03-12 18:08:32] 2026-03-12 17:08:00,523 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 18:08:32] 2026-03-12 17:08:00,523 | INFO     | **************************************
[2026-03-12 18:08:32] 2026-03-12 17:08:00,523 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 18:08:32] 2026-03-12 17:08:00,523 | INFO     | **************************************
[2026-03-12 18:08:32] 2026-03-12 17:08:00,523 | INFO     | 
[2026-03-12 18:08:32] 2026-03-12 17:08:00,524 | INFO     | architecture information:
[2026-03-12 18:08:32] 2026-03-12 17:08:00,524 | INFO     | executing command: cat /etc/os-release
[2026-03-12 18:08:32] 2026-03-12 17:08:00,533 | INFO     | cat /etc/os-release:
[2026-03-12 18:08:32] NAME="CentOS Linux"
[2026-03-12 18:08:32] VERSION="7 (Core)"
[2026-03-12 18:08:32] ID="centos"
[2026-03-12 18:08:32] ID_LIKE="rhel fedora"
[2026-03-12 18:08:32] VERSION_ID="7"
[2026-03-12 18:08:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 18:08:32] ANSI_COLOR="0;31"
[2026-03-12 18:08:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 18:08:32] HOME_URL="https://www.centos.org/"
[2026-03-12 18:08:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 18:08:32] 
[2026-03-12 18:08:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 18:08:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 18:08:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 18:08:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 18:08:32] 
[2026-03-12 18:08:32] 2026-03-12 17:08:00,533 | INFO     | **************************************
[2026-03-12 18:08:32] 2026-03-12 17:08:01,036 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 18:08:32] 2026-03-12 17:08:01,047 | INFO     | sufficient remaining disk space (132046127104 B)
[2026-03-12 18:08:32] 2026-03-12 17:08:01,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 18:08:32] 2026-03-12 17:08:01,048 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 18:08:32] 2026-03-12 17:08:01,048 | INFO     | update_server=False
[2026-03-12 18:08:32] 2026-03-12 17:08:01,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 18:08:32] 2026-03-12 17:08:01,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 18:08:32] 2026-03-12 17:08:01,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 18:08:32] 2026-03-12 17:08:01,048 | INFO     | aborting loop
[2026-03-12 18:08:32] 2026-03-12 17:08:01,048 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 18:08:32] 2026-03-12 17:08:01,587 | INFO     | all data control threads have been joined
[2026-03-12 18:08:32] 2026-03-12 17:08:01,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 18:08:32] 2026-03-12 17:08:01,945 | INFO     | all payload control threads have been joined
[2026-03-12 18:08:32] 2026-03-12 17:08:02,053 | INFO     | [job] retrieve thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:02,054 | INFO     | [job] job monitor thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:02,054 | INFO     | [job] queue monitor thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:02,223 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:02,371 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:02,410 | INFO     | all job control threads have been joined
[2026-03-12 18:08:32] 2026-03-12 17:08:02,525 | INFO     | [data] copytool_in thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:02,593 | INFO     | [data] control thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:02,634 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:02,950 | INFO     | [payload] control thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:02,960 | INFO     | [payload] validate_post thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:03,049 | INFO     | [payload] failed_post thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:03,416 | INFO     | [job] control thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:03,550 | INFO     | [job] validate thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:03,802 | INFO     | [data] copytool_out thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:05,054 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:11,328 | INFO     | job.realtimelogging is not enabled
[2026-03-12 18:08:32] 2026-03-12 17:08:12,333 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 18:08:32] 2026-03-12 17:08:19,979 | INFO     | [monitor] cgroup control has ended
[2026-03-12 18:08:32] 2026-03-12 17:08:21,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140447586740032)>', '<ExcThread(monitor, started 140446965688064)>']
[2026-03-12 18:08:32] 2026-03-12 17:08:26,175 | INFO     | all workflow threads have been joined
[2026-03-12 18:08:32] 2026-03-12 17:08:26,175 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 18:08:32] 2026-03-12 17:08:26,175 | INFO     | traces error code: 0
[2026-03-12 18:08:32] 2026-03-12 17:08:26,176 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 18:08:32] 2026-03-12 17:08:32,070 | INFO     | PID=3489824 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 18:08:32] 2026-03-12 17:08:32,070 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 18:08:32] 2026-03-12 17:08:32,070 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 18:08:32] 2026-03-12 17:08:32,070 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 18:08:32] 2026-03-12 17:08:32,070 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 18:08:32] 2026-03-12 17:08:32,070 | INFO     | [monitor] control thread has ended
[2026-03-12 18:08:32] 2026-03-12 17:08:32,117 [wrapper] ==== pilot stdout END ====
[2026-03-12 18:08:32] 2026-03-12 17:08:32,120 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 18:08:32] 2026-03-12 17:08:32,122 [wrapper] pilotpid: 3489824
[2026-03-12 18:08:32] 2026-03-12 17:08:32,124 [wrapper] Pilot exit status: 0
[2026-03-12 18:08:32] 2026-03-12 17:08:32,131 [wrapper] pandaids: 7050114005
[2026-03-12 18:08:32] 2026-03-12 17:08:32,147 [wrapper] cleanup supervisor_pilot 3501193 3489825
[2026-03-12 18:08:32] 2026-03-12 17:08:32,149 [wrapper] Test setup, not cleaning
[2026-03-12 18:08:32] 2026-03-12 17:08:32,151 [wrapper] apfmon messages muted
[2026-03-12 18:08:32] 2026-03-12 17:08:32,154 [wrapper] ==== wrapper stdout END ====
[2026-03-12 18:08:32] 2026-03-12 17:08:32,156 [wrapper] ==== wrapper stderr END ====
[2026-03-12 18:08:32]  *** Error codes and diagnostics ***
[2026-03-12 18:08:32]     "exeErrorCode": 0,
[2026-03-12 18:08:32]     "exeErrorDiag": "",
[2026-03-12 18:08:32]     "pilotErrorCode": 0,
[2026-03-12 18:08:32]     "pilotErrorDiag": "",
[2026-03-12 18:08:32]  *** Listing of results directory ***
[2026-03-12 18:08:32] total 422872
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc      5111 Mar 11 20:56 queuedata.json
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc    585013 Mar 11 20:56 pilot3.tar.gz
[2026-03-12 18:08:32] -rwx------ 1 boinc boinc     36322 Mar 11 20:57 runpilot2-wrapper.sh
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc       100 Mar 12 16:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 18:08:32] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 16:30 run_atlas
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc       105 Mar 12 16:30 job.xml
[2026-03-12 18:08:32] -rw-r--r-- 2 boinc boinc 219228038 Mar 12 16:30 EVNT.48967008._000550.pool.root.1
[2026-03-12 18:08:32] -rw-r--r-- 2 boinc boinc    597523 Mar 12 16:30 input.tar.gz
[2026-03-12 18:08:32] -rw-r--r-- 2 boinc boinc     15845 Mar 12 16:30 start_atlas.sh
[2026-03-12 18:08:32] drwxrwx--x 2 boinc boinc      4096 Mar 12 16:30 shared
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc         0 Mar 12 16:30 boinc_setup_complete
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc      6441 Mar 12 16:30 init_data.xml
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc         0 Mar 12 16:30 boinc_lockfile
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc      2563 Mar 12 16:30 pandaJob.out
[2026-03-12 18:08:32] -rw------- 1 boinc boinc   1006536 Mar 12 16:30 agis_schedconf.cvmfs.json
[2026-03-12 18:08:32] -rw------- 1 boinc boinc   1511578 Mar 12 16:30 agis_ddmendpoints.agis.ALL.json
[2026-03-12 18:08:32] -rw------- 1 boinc boinc       426 Mar 12 16:30 workernode_map.json
[2026-03-12 18:08:32] drwx------ 5 boinc boinc      4096 Mar 12 16:30 pilot3
[2026-03-12 18:08:32] -rw------- 1 boinc boinc 207625613 Mar 12 18:07 HITS.48967011._013983.pool.root.1
[2026-03-12 18:08:32] -rw------- 1 boinc boinc        95 Mar 12 18:07 pilot_heartbeat.json
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc       529 Mar 12 18:07 boinc_task_state.xml
[2026-03-12 18:08:32] -rw------- 1 boinc boinc      1024 Mar 12 18:07 memory_monitor_summary.json
[2026-03-12 18:08:32] -rw------- 1 boinc boinc    268882 Mar 12 18:07 log.48967011._013983.job.log.tgz.1
[2026-03-12 18:08:32] -rw------- 1 boinc boinc      6317 Mar 12 18:07 heartbeat.json
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc      8192 Mar 12 18:08 boinc_mmap_file
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc        27 Mar 12 18:08 wrapper_checkpoint.txt
[2026-03-12 18:08:32] -rw------- 1 boinc boinc       747 Mar 12 18:08 pilotlog.txt
[2026-03-12 18:08:32] -rw------- 1 boinc boinc    851450 Mar 12 18:08 log.48967011._013983.job.log.1
[2026-03-12 18:08:32] -rw------- 1 boinc boinc       357 Mar 12 18:08 output.list
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc       620 Mar 12 18:08 runtime_log
[2026-03-12 18:08:32] -rw------- 1 boinc boinc   1136640 Mar 12 18:08 result.tar.gz
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc      8896 Mar 12 18:08 runtime_log.err
[2026-03-12 18:08:32] -rw------- 1 boinc boinc       657 Mar 12 18:08 aYUMDmHreK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmx2hLDmyyFRYn.diag
[2026-03-12 18:08:32] -rw-r--r-- 1 boinc boinc     21346 Mar 12 18:08 stderr.txt
[2026-03-12 18:08:32] HITS file was successfully produced:
[2026-03-12 18:08:32] -rw------- 1 boinc boinc 207625613 Mar 12 18:07 shared/HITS.pool.root.1
[2026-03-12 18:08:32]  *** Contents of shared directory: ***
[2026-03-12 18:08:32] total 418568
[2026-03-12 18:08:32] -rw-r--r-- 2 boinc boinc 219228038 Mar 12 16:30 ATLAS.root_0
[2026-03-12 18:08:32] -rw-r--r-- 2 boinc boinc    597523 Mar 12 16:30 input.tar.gz
[2026-03-12 18:08:32] -rw-r--r-- 2 boinc boinc     15845 Mar 12 16:30 start_atlas.sh
[2026-03-12 18:08:32] -rw------- 1 boinc boinc 207625613 Mar 12 18:07 HITS.pool.root.1
[2026-03-12 18:08:32] -rw------- 1 boinc boinc   1136640 Mar 12 18:08 result.tar.gz
18:08:34 (3485778): run_atlas exited; CPU time 16928.334390
18:08:34 (3485778): called boinc_finish(0)

</stderr_txt>
]]>

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