Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:14 (427479): wrapper (7.7.26015): starting
00:04:14 (427479): wrapper: running run_atlas (--nthreads 9)
[2026-03-12 00:04:14] Arguments: --nthreads 9
[2026-03-12 00:04:14] Threads: 9
[2026-03-12 00:04:14] Checking for CVMFS
[2026-03-12 00:04:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 00:04:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 00:04:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 00:04:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 00:04:16] 2.13.3.0 11338 182052 460904 157181 2 689 28521235 32935937 42832 16776704 0 1083419385 99.558 1267825440 36355 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-12 00:04:16] CVMFS is ok
[2026-03-12 00:04:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 00:04:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 00:04:16] Further information can be found at the LHC@home message board.
[2026-03-12 00:04:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 00:04:16] Checking for apptainer binary...
[2026-03-12 00:04:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 00:04:16] Running /usr/bin/apptainer --version
[2026-03-12 00:04:16] apptainer version 1.4.5-2.el9
[2026-03-12 00:04:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 00:04:17] c7-3-17.aglt2.org
[2026-03-12 00:04:17] apptainer works
[2026-03-12 00:04:18] Set ATHENA_PROC_NUMBER=9
[2026-03-12 00:04:18] Set ATHENA_CORE_NUMBER=9
[2026-03-12 00:04:18] Starting ATLAS job with PandaID=7036889083
[2026-03-12 00:04:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 08:48:23]  *** The last 200 lines of the pilot log: ***
[2026-03-12 08:48:23] 2026-03-12 12:47:29,303 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 08:48:23] 2026-03-12 12:47:29,303 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 08:48:23] 2026-03-12 12:47:29,303 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 08:48:23] 2026-03-12 12:47:29,309 | INFO     | fitting pss+swap vs Time
[2026-03-12 08:48:23] 2026-03-12 12:47:29,309 | INFO     | sum of square deviations: 41617102266.21875
[2026-03-12 08:48:23] 2026-03-12 12:47:29,314 | INFO     | sum of deviations: 450825186453.9843
[2026-03-12 08:48:23] 2026-03-12 12:47:29,314 | INFO     | mean x: 1773304052.6640625
[2026-03-12 08:48:23] 2026-03-12 12:47:29,314 | INFO     | mean y: 2528692.982421875
[2026-03-12 08:48:23] 2026-03-12 12:47:29,314 | INFO     | intersect: -19207125190.84428
[2026-03-12 08:48:23] 2026-03-12 12:47:29,315 | INFO     | chi2: 9.247751364442998
[2026-03-12 08:48:23] 2026-03-12 12:47:29,315 | INFO     | sum of square deviations: 40409700596.08288
[2026-03-12 08:48:23] 2026-03-12 12:47:29,320 | INFO     | sum of deviations: 481676296184.47375
[2026-03-12 08:48:23] 2026-03-12 12:47:29,320 | INFO     | mean x: 1773303900.1656804
[2026-03-12 08:48:23] 2026-03-12 12:47:29,320 | INFO     | mean y: 2532553.613412229
[2026-03-12 08:48:23] 2026-03-12 12:47:29,320 | INFO     | intersect: -21134928057.121346
[2026-03-12 08:48:23] 2026-03-12 12:47:29,321 | INFO     | chi2: 8.480072498235161
[2026-03-12 08:48:23] 2026-03-12 12:47:29,321 | INFO     | current chi2=8.480072498235161 (change=8.301248984261314 %)
[2026-03-12 08:48:23] 2026-03-12 12:47:29,321 | INFO     | right removable region: 506
[2026-03-12 08:48:23] 2026-03-12 12:47:29,321 | INFO     | sum of square deviations: 40409649356.08287
[2026-03-12 08:48:23] 2026-03-12 12:47:29,327 | INFO     | sum of deviations: 266151486963.9113
[2026-03-12 08:48:23] 2026-03-12 12:47:29,327 | INFO     | mean x: 1773304205.1656804
[2026-03-12 08:48:23] 2026-03-12 12:47:29,327 | INFO     | mean y: 2552008.822485207
[2026-03-12 08:48:23] 2026-03-12 12:47:29,327 | INFO     | intersect: -11677023502.593264
[2026-03-12 08:48:23] 2026-03-12 12:47:29,327 | INFO     | chi2: 4.520098248756973
[2026-03-12 08:48:23] 2026-03-12 12:47:29,327 | INFO     | current chi2=4.520098248756973 (change=51.12219099946332 %)
[2026-03-12 08:48:23] 2026-03-12 12:47:29,328 | INFO     | sum of square deviations: 39225778283.44429
[2026-03-12 08:48:23] 2026-03-12 12:47:29,332 | INFO     | sum of deviations: 115040644591.35852
[2026-03-12 08:48:23] 2026-03-12 12:47:29,333 | INFO     | mean x: 1773304357.6673307
[2026-03-12 08:48:23] 2026-03-12 12:47:29,333 | INFO     | mean y: 2571467.924302789
[2026-03-12 08:48:23] 2026-03-12 12:47:29,333 | INFO     | intersect: -5198143095.050123
[2026-03-12 08:48:23] 2026-03-12 12:47:29,333 | INFO     | chi2: 1.526213125349775
[2026-03-12 08:48:23] 2026-03-12 12:47:29,333 | INFO     | current chi2=1.526213125349775 (change=66.23495682268667 %)
[2026-03-12 08:48:23] 2026-03-12 12:47:29,334 | INFO     | sum of square deviations: 38065256485.80241
[2026-03-12 08:48:23] 2026-03-12 12:47:29,338 | INFO     | sum of deviations: 49367457847.66202
[2026-03-12 08:48:23] 2026-03-12 12:47:29,338 | INFO     | mean x: 1773304510.169014
[2026-03-12 08:48:23] 2026-03-12 12:47:29,338 | INFO     | mean y: 2580084.7183098593
[2026-03-12 08:48:23] 2026-03-12 12:47:29,338 | INFO     | intersect: -2297247730.430913
[2026-03-12 08:48:23] 2026-03-12 12:47:29,339 | INFO     | chi2: 0.9331484096022318
[2026-03-12 08:48:23] 2026-03-12 12:47:29,339 | INFO     | current chi2=0.9331484096022318 (change=38.85857786812216 %)
[2026-03-12 08:48:23] 2026-03-12 12:47:29,339 | INFO     | sum of square deviations: 36927911911.333275
[2026-03-12 08:48:23] 2026-03-12 12:47:29,344 | INFO     | sum of deviations: 19103428737.000008
[2026-03-12 08:48:23] 2026-03-12 12:47:29,344 | INFO     | mean x: 1773304662.6666667
[2026-03-12 08:48:23] 2026-03-12 12:47:29,344 | INFO     | mean y: 2584142.5
[2026-03-12 08:48:23] 2026-03-12 12:47:29,344 | INFO     | intersect: -914776127.790447
[2026-03-12 08:48:23] 2026-03-12 12:47:29,344 | INFO     | chi2: 0.8234552067022949
[2026-03-12 08:48:23] 2026-03-12 12:47:29,344 | INFO     | current chi2=0.8234552067022949 (change=11.755172250327815 %)
[2026-03-12 08:48:23] 2026-03-12 12:47:29,344 | INFO     | left removable region: 40
[2026-03-12 08:48:23] 2026-03-12 12:47:29,345 | INFO     | sum of square deviations: 31377407179.375595
[2026-03-12 08:48:23] 2026-03-12 12:47:29,349 | INFO     | sum of deviations: 43747079441.907715
[2026-03-12 08:48:23] 2026-03-12 12:47:29,349 | INFO     | mean x: 1773305089.6545064
[2026-03-12 08:48:23] 2026-03-12 12:47:29,349 | INFO     | mean y: 2589965.924892704
[2026-03-12 08:48:23] 2026-03-12 12:47:29,349 | INFO     | intersect: -2469791457.70167
[2026-03-12 08:48:23] 2026-03-12 12:47:29,349 | INFO     | chi2: 0.008200083278474277
[2026-03-12 08:48:23] 2026-03-12 12:47:29,350 | INFO     | current memory leak: 1.39 B/s (using 466 data points, chi2=0.01)
[2026-03-12 08:48:23] 2026-03-12 12:47:29,350 | INFO     | could have reported an average CPU frequency of 3197 MHz (21 samples)
[2026-03-12 08:48:23] 2026-03-12 12:47:29,350 | INFO     | ..............................
[2026-03-12 08:48:23] 2026-03-12 12:47:29,351 | INFO     | . Timing measurements:
[2026-03-12 08:48:23] 2026-03-12 12:47:29,351 | INFO     | . get job = 0 s
[2026-03-12 08:48:23] 2026-03-12 12:47:29,351 | INFO     | . initial setup = 40 s
[2026-03-12 08:48:23] 2026-03-12 12:47:29,351 | INFO     | . payload setup = 42 s
[2026-03-12 08:48:23] 2026-03-12 12:47:29,351 | INFO     | . stage-in = 0 s
[2026-03-12 08:48:23] 2026-03-12 12:47:29,351 | INFO     | . payload execution = 31214 s
[2026-03-12 08:48:23] 2026-03-12 12:47:29,351 | INFO     | . stage-out = 2 s
[2026-03-12 08:48:23] 2026-03-12 12:47:29,351 | INFO     | . log creation = 0 s
[2026-03-12 08:48:23] 2026-03-12 12:47:29,351 | INFO     | ..............................
[2026-03-12 08:48:23] 2026-03-12 12:47:29,418 | INFO     | 
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | job summary report
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | --------------------------------------------------
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | PanDA job id: 7036889083
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | task id: 48838586
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | errors: (none)
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | pilot state: finished 
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | transexitcode: 0
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | exeerrorcode: 0
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | exeerrordiag: 
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | exitcode: 0
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | exitmsg: OK
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | cpuconsumptiontime: 38902 s
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | nevents: 400
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | neventsw: 0
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | pid: 455422
[2026-03-12 08:48:23] 2026-03-12 12:47:29,420 | INFO     | pgrp: 455422
[2026-03-12 08:48:23] 2026-03-12 12:47:29,421 | INFO     | corecount: 9
[2026-03-12 08:48:23] 2026-03-12 12:47:29,421 | INFO     | event service: False
[2026-03-12 08:48:23] 2026-03-12 12:47:29,421 | INFO     | sizes: {0: 2263192, 1: 2280213, 31260: 2318657, 31261: 2318656, 31265: 2327710, 31266: 2328088}
[2026-03-12 08:48:23] 2026-03-12 12:47:29,421 | INFO     | --------------------------------------------------
[2026-03-12 08:48:23] 2026-03-12 12:47:29,421 | INFO     | 
[2026-03-12 08:48:23] 2026-03-12 12:47:29,421 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2026-03-12 08:48:23] 2026-03-12 12:47:29,485 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,485 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,485 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,485 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 08:48:23] 2026-03-12 12:47:29,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,487 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 08:48:23] 2026-03-12 12:47:29,487 | INFO     | job 7036889083 has completed (purged errors)
[2026-03-12 08:48:23] 2026-03-12 12:47:29,487 | INFO     | overall cleanup function is called
[2026-03-12 08:48:23] 2026-03-12 12:47:30,496 | INFO     | --- collectZombieJob: --- 10, [455422]
[2026-03-12 08:48:23] 2026-03-12 12:47:30,497 | INFO     | zombie collector waiting for pid 455422
[2026-03-12 08:48:23] 2026-03-12 12:47:30,497 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 08:48:23] 2026-03-12 12:47:30,497 | INFO     | collected zombie processes
[2026-03-12 08:48:23] 2026-03-12 12:47:30,497 | INFO     | will attempt to kill all subprocesses of pid=455422
[2026-03-12 08:48:23] 2026-03-12 12:47:31,446 | INFO     | process IDs to be killed: [455422] (in reverse order)
[2026-03-12 08:48:23] 2026-03-12 12:47:31,670 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 08:48:23] 2026-03-12 12:47:31,670 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 08:48:23] 2026-03-12 12:47:31,785 | INFO     | did not find any defunct processes belonging to 455422
[2026-03-12 08:48:23] 2026-03-12 12:47:31,897 | INFO     | did not find any defunct processes belonging to 455422
[2026-03-12 08:48:23] 2026-03-12 12:47:31,898 | INFO     | ready for new job
[2026-03-12 08:48:23] 2026-03-12 12:47:31,898 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 08:48:23] 2026-03-12 12:47:31,916 | INFO     | **************************************
[2026-03-12 08:48:23] 2026-03-12 12:47:31,916 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 08:48:23] 2026-03-12 12:47:31,917 | INFO     | **************************************
[2026-03-12 08:48:23] 2026-03-12 12:47:31,917 | INFO     | 
[2026-03-12 08:48:23] 2026-03-12 12:47:31,943 | INFO     | architecture information:
[2026-03-12 08:48:23] 2026-03-12 12:47:31,964 | INFO     | executing command: cat /etc/os-release
[2026-03-12 08:48:23] 2026-03-12 12:47:32,032 | INFO     | cat /etc/os-release:
[2026-03-12 08:48:23] NAME="CentOS Linux"
[2026-03-12 08:48:23] VERSION="7 (Core)"
[2026-03-12 08:48:23] ID="centos"
[2026-03-12 08:48:23] ID_LIKE="rhel fedora"
[2026-03-12 08:48:23] VERSION_ID="7"
[2026-03-12 08:48:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 08:48:23] ANSI_COLOR="0;31"
[2026-03-12 08:48:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 08:48:23] HOME_URL="https://www.centos.org/"
[2026-03-12 08:48:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 08:48:23] 
[2026-03-12 08:48:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 08:48:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 08:48:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 08:48:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 08:48:23] 
[2026-03-12 08:48:23] 2026-03-12 12:47:32,032 | INFO     | **************************************
[2026-03-12 08:48:23] 2026-03-12 12:47:32,536 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2026-03-12 08:48:23] 2026-03-12 12:47:32,584 | INFO     | sufficient remaining disk space (72972500992 B)
[2026-03-12 08:48:23] 2026-03-12 12:47:32,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 08:48:23] 2026-03-12 12:47:32,584 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 08:48:23] 2026-03-12 12:47:32,585 | INFO     | update_server=False
[2026-03-12 08:48:23] 2026-03-12 12:47:32,585 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 08:48:23] 2026-03-12 12:47:32,587 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 08:48:23] 2026-03-12 12:47:32,587 | INFO     | aborting loop
[2026-03-12 08:48:23] 2026-03-12 12:47:32,844 | INFO     | all payload control threads have been joined
[2026-03-12 08:48:23] 2026-03-12 12:47:32,960 | INFO     | all data control threads have been joined
[2026-03-12 08:48:23] 2026-03-12 12:47:33,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 08:48:23] 2026-03-12 12:47:33,591 | INFO     | [job] retrieve thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:33,595 | INFO     | [job] job monitor thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:33,605 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:33,627 | INFO     | [job] validate thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:33,754 | INFO     | [data] copytool_in thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:33,852 | INFO     | [payload] control thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:33,860 | INFO     | all job control threads have been joined
[2026-03-12 08:48:23] 2026-03-12 12:47:33,941 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:33,966 | INFO     | [data] control thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:34,054 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:34,061 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:34,316 | INFO     | [payload] validate_post thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:34,434 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 08:48:23] 2026-03-12 12:47:34,867 | INFO     | [job] control thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:34,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 08:48:23] 2026-03-12 12:47:35,110 | INFO     | [payload] failed_post thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:35,288 | INFO     | [data] copytool_out thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:35,439 | INFO     | [job] queue monitor thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:47:39,000 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 08:48:23] 2026-03-12 12:48:02,470 | INFO     | PID=438013 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 08:48:23] 2026-03-12 12:48:02,471 | INFO     | .. there are 66 such processes running
[2026-03-12 08:48:23] 2026-03-12 12:48:02,471 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 08:48:23] 2026-03-12 12:48:02,471 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 08:48:23] 2026-03-12 12:48:02,471 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 08:48:23] 2026-03-12 12:48:15,907 | INFO     | [monitor] cgroup control has ended
[2026-03-12 08:48:23] 2026-03-12 12:48:17,377 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888979314496)>', '<ExcThread(monitor, started 139888494114560)>']
[2026-03-12 08:48:23] 2026-03-12 12:48:17,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 08:48:23] 2026-03-12 12:48:17,563 | INFO     | [monitor] control thread has ended
[2026-03-12 08:48:23] 2026-03-12 12:48:22,403 | INFO     | all workflow threads have been joined
[2026-03-12 08:48:23] 2026-03-12 12:48:22,407 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 08:48:23] 2026-03-12 12:48:22,408 | INFO     | traces error code: 0
[2026-03-12 08:48:23] 2026-03-12 12:48:22,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 08:48:23] 2026-03-12 12:48:22,586 [wrapper] ==== pilot stdout END ====
[2026-03-12 08:48:23] 2026-03-12 12:48:22,592 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 08:48:23] 2026-03-12 12:48:22,619 [wrapper] pilotpid: 438013
[2026-03-12 08:48:23] 2026-03-12 12:48:22,622 [wrapper] Pilot exit status: 0
[2026-03-12 08:48:23] 2026-03-12 12:48:22,638 [wrapper] pandaids: 7036889083
[2026-03-12 08:48:23] 2026-03-12 12:48:22,907 [wrapper] cleanup supervisor_pilot 2785723 438014
[2026-03-12 08:48:23] 2026-03-12 12:48:22,910 [wrapper] Test setup, not cleaning
[2026-03-12 08:48:23] 2026-03-12 12:48:22,913 [wrapper] apfmon messages muted
[2026-03-12 08:48:23] 2026-03-12 12:48:22,915 [wrapper] ==== wrapper stdout END ====
[2026-03-12 08:48:23] 2026-03-12 12:48:22,916 [wrapper] ==== wrapper stderr END ====
[2026-03-12 08:48:23]  *** Error codes and diagnostics ***
[2026-03-12 08:48:23]     "exeErrorCode": 0,
[2026-03-12 08:48:23]     "exeErrorDiag": "",
[2026-03-12 08:48:23]     "pilotErrorCode": 0,
[2026-03-12 08:48:23]     "pilotErrorDiag": "",
[2026-03-12 08:48:23]  *** Listing of results directory ***
[2026-03-12 08:48:23] total 492652
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas    584627 Mar  3 19:25 pilot3.tar.gz
[2026-03-12 08:48:23] -rwx------. 1 boincer umatlas     36322 Mar  3 19:31 runpilot2-wrapper.sh
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas      5111 Mar  3 19:32 queuedata.json
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas       100 Mar 12 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 08:48:23] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 12 00:04 run_atlas
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas       105 Mar 12 00:04 job.xml
[2026-03-12 08:48:23] -rw-r--r--. 2 boincer umatlas 278240821 Mar 12 00:04 EVNT.48220221._000157.pool.root.1
[2026-03-12 08:48:23] -rw-r--r--. 2 boincer umatlas     15845 Mar 12 00:04 start_atlas.sh
[2026-03-12 08:48:23] drwxrwx--x. 2 boincer umatlas      4096 Mar 12 00:04 shared
[2026-03-12 08:48:23] -rw-r--r--. 2 boincer umatlas    597959 Mar 12 00:04 input.tar.gz
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas         0 Mar 12 00:04 boinc_lockfile
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas      2562 Mar 12 00:04 pandaJob.out
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas        57 Mar 12 00:04 setup.sh.local
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas   1006227 Mar 12 00:05 agis_schedconf.cvmfs.json
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas       428 Mar 12 00:06 workernode_map.json
[2026-03-12 08:48:23] drwx------. 5 boincer umatlas      4096 Mar 12 00:06 pilot3
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas       530 Mar 12 08:46 boinc_task_state.xml
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas 213220744 Mar 12 08:46 HITS.48838586._003895.pool.root.1
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas      1042 Mar 12 08:47 memory_monitor_summary.json
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas   1511578 Mar 12 08:47 agis_ddmendpoints.agis.ALL.json
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas        95 Mar 12 08:47 pilot_heartbeat.json
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas    694668 Mar 12 08:47 log.48838586._003895.job.log.tgz.1
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas      6334 Mar 12 08:47 heartbeat.json
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas      6946 Mar 12 08:47 init_data.xml
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas        28 Mar 12 08:48 wrapper_checkpoint.txt
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas      8192 Mar 12 08:48 boinc_mmap_file
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas      4819 Mar 12 08:48 pilotlog.txt
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas   3846088 Mar 12 08:48 log.48838586._003895.job.log.1
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas       357 Mar 12 08:48 output.list
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas       620 Mar 12 08:48 runtime_log
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas   4556800 Mar 12 08:48 result.tar.gz
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas       661 Mar 12 08:48 WwMLDmGKpH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmHYILDmgK8Qvm.diag
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas      9337 Mar 12 08:48 runtime_log.err
[2026-03-12 08:48:23] -rw-r--r--. 1 boincer umatlas     20952 Mar 12 08:48 stderr.txt
[2026-03-12 08:48:23] HITS file was successfully produced:
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas 213220744 Mar 12 08:46 shared/HITS.pool.root.1
[2026-03-12 08:48:23]  *** Contents of shared directory: ***
[2026-03-12 08:48:23] total 485000
[2026-03-12 08:48:23] -rw-r--r--. 2 boincer umatlas 278240821 Mar 12 00:04 ATLAS.root_0
[2026-03-12 08:48:23] -rw-r--r--. 2 boincer umatlas     15845 Mar 12 00:04 start_atlas.sh
[2026-03-12 08:48:23] -rw-r--r--. 2 boincer umatlas    597959 Mar 12 00:04 input.tar.gz
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas 213220744 Mar 12 08:46 HITS.pool.root.1
[2026-03-12 08:48:23] -rw-------. 1 boincer umatlas   4556800 Mar 12 08:48 result.tar.gz
08:48:24 (427479): run_atlas exited; CPU time 40651.805116
08:48:24 (427479): called boinc_finish(0)

</stderr_txt>
]]>

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