Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:37:29 (27363): wrapper (7.7.26015): starting
13:37:29 (27363): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 13:37:29] Arguments: --nthreads 8
[2026-03-12 13:37:29] Threads: 8
[2026-03-12 13:37:29] Checking for CVMFS
[2026-03-12 13:37:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 13:37:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 13:37:32] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 13:37:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 13:37:33] 2.11.2.0 4174 124703 138776 157201 2 53 18801039 25165825 4872 130560 160 39130451 99.793 33122552 1115 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-12 13:37:33] CVMFS is ok
[2026-03-12 13:37:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 13:37:33] Checking for apptainer binary...
[2026-03-12 13:37:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 13:37:33] Running /usr/bin/apptainer --version
[2026-03-12 13:37:33] apptainer version 1.3.2-1.el7
[2026-03-12 13:37:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 13:37:52] cg-vwn425.simple-grid.lan
[2026-03-12 13:37:52] apptainer works
[2026-03-12 13:37:52] Set ATHENA_PROC_NUMBER=8
[2026-03-12 13:37:52] Set ATHENA_CORE_NUMBER=8
[2026-03-12 13:37:52] Starting ATLAS job with PandaID=7036901906
[2026-03-12 13:37:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 19:18:49]  *** The last 200 lines of the pilot log: ***
[2026-03-12 19:18:49] 2026-03-12 18:17:51,310 | INFO     | job 7036901906 has finished - writing final server update
[2026-03-12 19:18:49] 2026-03-12 18:17:51,310 | INFO     | total number of processed events: 400 (read)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,312 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-7036901906/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,313 | INFO     | extracted standard info from prmon json
[2026-03-12 19:18:49] 2026-03-12 18:17:51,313 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 19:18:49] 2026-03-12 18:17:51,313 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 19:18:49] 2026-03-12 18:17:51,314 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 19:18:49] 2026-03-12 18:17:51,314 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 19:18:49] 2026-03-12 18:17:51,320 | INFO     | fitting pss+swap vs Time
[2026-03-12 19:18:49] 2026-03-12 18:17:51,321 | INFO     | sum of square deviations: 10644478650.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,330 | INFO     | sum of deviations: 96848875707.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,330 | INFO     | mean x: 1773329528.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,330 | INFO     | mean y: 2497012.8646153845
[2026-03-12 19:18:49] 2026-03-12 18:17:51,330 | INFO     | intersect: -16132156143.194372
[2026-03-12 19:18:49] 2026-03-12 18:17:51,331 | INFO     | chi2: 5.6093784148476855
[2026-03-12 19:18:49] 2026-03-12 18:17:51,332 | INFO     | sum of square deviations: 10160711440.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,335 | INFO     | sum of deviations: 117010455834.00002
[2026-03-12 19:18:49] 2026-03-12 18:17:51,335 | INFO     | mean x: 1773329375.5
[2026-03-12 19:18:49] 2026-03-12 18:17:51,335 | INFO     | mean y: 2503282.56875
[2026-03-12 19:18:49] 2026-03-12 18:17:51,336 | INFO     | intersect: -20419105951.821396
[2026-03-12 19:18:49] 2026-03-12 18:17:51,336 | INFO     | chi2: 4.86931442214045
[2026-03-12 19:18:49] 2026-03-12 18:17:51,336 | INFO     | current chi2=4.86931442214045 (change=13.193333342395498 %)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,336 | INFO     | right removable region: 319
[2026-03-12 19:18:49] 2026-03-12 18:17:51,337 | INFO     | sum of square deviations: 10160711440.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,340 | INFO     | sum of deviations: -12765193822.5
[2026-03-12 19:18:49] 2026-03-12 18:17:51,341 | INFO     | mean x: 1773329680.5
[2026-03-12 19:18:49] 2026-03-12 18:17:51,341 | INFO     | mean y: 2531538.384375
[2026-03-12 19:18:49] 2026-03-12 18:17:51,341 | INFO     | intersect: 2230416585.258071
[2026-03-12 19:18:49] 2026-03-12 18:17:51,341 | INFO     | chi2: 1.4178366174114743
[2026-03-12 19:18:49] 2026-03-12 18:17:51,342 | INFO     | current chi2=1.4178366174114743 (change=74.72381942251309 %)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,342 | INFO     | sum of square deviations: 9691828230.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,346 | INFO     | sum of deviations: -42683099828.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,346 | INFO     | mean x: 1773329833.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,346 | INFO     | mean y: 2541205.0222222223
[2026-03-12 19:18:49] 2026-03-12 18:17:51,346 | INFO     | intersect: 7812338540.84537
[2026-03-12 19:18:49] 2026-03-12 18:17:51,347 | INFO     | chi2: 0.903787726639949
[2026-03-12 19:18:49] 2026-03-12 18:17:51,347 | INFO     | current chi2=0.903787726639949 (change=36.25586223820468 %)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,347 | INFO     | sum of square deviations: 9237596457.5
[2026-03-12 19:18:49] 2026-03-12 18:17:51,355 | INFO     | sum of deviations: -39741674826.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,355 | INFO     | mean x: 1773329985.5
[2026-03-12 19:18:49] 2026-03-12 18:17:51,355 | INFO     | mean y: 2540198.580645161
[2026-03-12 19:18:49] 2026-03-12 18:17:51,355 | INFO     | intersect: 7631700442.500762
[2026-03-12 19:18:49] 2026-03-12 18:17:51,356 | INFO     | chi2: 0.8869042381855663
[2026-03-12 19:18:49] 2026-03-12 18:17:51,356 | INFO     | current chi2=0.8869042381855663 (change=1.8680811828626152 %)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,356 | INFO     | left removable region: 30
[2026-03-12 19:18:49] 2026-03-12 18:17:51,357 | INFO     | sum of square deviations: 7484568240.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,359 | INFO     | sum of deviations: 7963790401.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,360 | INFO     | mean x: 1773330260.0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,360 | INFO     | mean y: 2537704.560553633
[2026-03-12 19:18:49] 2026-03-12 18:17:51,360 | INFO     | intersect: -1884335398.8091118
[2026-03-12 19:18:49] 2026-03-12 18:17:51,360 | INFO     | chi2: 0.0005791070882373968
[2026-03-12 19:18:49] 2026-03-12 18:17:51,361 | INFO     | current memory leak: 1.06 B/s (using 289 data points, chi2=0.00)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,361 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,362 | INFO     | ..............................
[2026-03-12 19:18:49] 2026-03-12 18:17:51,362 | INFO     | . Timing measurements:
[2026-03-12 19:18:49] 2026-03-12 18:17:51,362 | INFO     | . get job = 0 s
[2026-03-12 19:18:49] 2026-03-12 18:17:51,362 | INFO     | . initial setup = 105 s
[2026-03-12 19:18:49] 2026-03-12 18:17:51,362 | INFO     | . payload setup = 123 s
[2026-03-12 19:18:49] 2026-03-12 18:17:51,362 | INFO     | . stage-in = 0 s
[2026-03-12 19:18:49] 2026-03-12 18:17:51,362 | INFO     | . payload execution = 19939 s
[2026-03-12 19:18:49] 2026-03-12 18:17:51,362 | INFO     | . stage-out = 3 s
[2026-03-12 19:18:49] 2026-03-12 18:17:51,362 | INFO     | . log creation = 1 s
[2026-03-12 19:18:49] 2026-03-12 18:17:51,363 | INFO     | ..............................
[2026-03-12 19:18:49] 2026-03-12 18:17:51,514 | INFO     | 
[2026-03-12 19:18:49] 2026-03-12 18:17:51,514 | INFO     | job summary report
[2026-03-12 19:18:49] 2026-03-12 18:17:51,514 | INFO     | --------------------------------------------------
[2026-03-12 19:18:49] 2026-03-12 18:17:51,514 | INFO     | PanDA job id: 7036901906
[2026-03-12 19:18:49] 2026-03-12 18:17:51,514 | INFO     | task id: 48844253
[2026-03-12 19:18:49] 2026-03-12 18:17:51,514 | INFO     | errors: (none)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,514 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 19:18:49] 2026-03-12 18:17:51,515 | INFO     | pilot state: finished 
[2026-03-12 19:18:49] 2026-03-12 18:17:51,515 | INFO     | transexitcode: 0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,515 | INFO     | exeerrorcode: 0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,515 | INFO     | exeerrordiag: 
[2026-03-12 19:18:49] 2026-03-12 18:17:51,515 | INFO     | exitcode: 0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,515 | INFO     | exitmsg: OK
[2026-03-12 19:18:49] 2026-03-12 18:17:51,515 | INFO     | cpuconsumptiontime: 77986 s
[2026-03-12 19:18:49] 2026-03-12 18:17:51,515 | INFO     | nevents: 400
[2026-03-12 19:18:49] 2026-03-12 18:17:51,515 | INFO     | neventsw: 0
[2026-03-12 19:18:49] 2026-03-12 18:17:51,515 | INFO     | pid: 3570
[2026-03-12 19:18:49] 2026-03-12 18:17:51,516 | INFO     | pgrp: 3570
[2026-03-12 19:18:49] 2026-03-12 18:17:51,516 | INFO     | corecount: 8
[2026-03-12 19:18:49] 2026-03-12 18:17:51,516 | INFO     | event service: False
[2026-03-12 19:18:49] 2026-03-12 18:17:51,516 | INFO     | sizes: {0: 2279786, 1: 2280243, 2: 2280303, 12: 2280331, 20066: 2313523, 20067: 2313522, 20071: 2322706, 20072: 2322762, 20074: 2322956}
[2026-03-12 19:18:49] 2026-03-12 18:17:51,516 | INFO     | --------------------------------------------------
[2026-03-12 19:18:49] 2026-03-12 18:17:51,516 | INFO     | 
[2026-03-12 19:18:49] 2026-03-12 18:17:51,516 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2026-03-12 19:18:49] 2026-03-12 18:17:51,919 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,920 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,920 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,920 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,921 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,921 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,921 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,921 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,921 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,921 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,921 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,921 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,921 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 19:18:49] 2026-03-12 18:17:51,922 | INFO     | job 7036901906 has completed (purged errors)
[2026-03-12 19:18:49] 2026-03-12 18:17:51,922 | INFO     | overall cleanup function is called
[2026-03-12 19:18:49] 2026-03-12 18:17:52,930 | INFO     | --- collectZombieJob: --- 10, [3570]
[2026-03-12 19:18:49] 2026-03-12 18:17:52,930 | INFO     | zombie collector waiting for pid 3570
[2026-03-12 19:18:49] 2026-03-12 18:17:52,930 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 19:18:49] 2026-03-12 18:17:52,930 | INFO     | collected zombie processes
[2026-03-12 19:18:49] 2026-03-12 18:17:52,930 | INFO     | will attempt to kill all subprocesses of pid=3570
[2026-03-12 19:18:49] 2026-03-12 18:17:53,063 | INFO     | process IDs to be killed: [3570] (in reverse order)
[2026-03-12 19:18:49] 2026-03-12 18:17:53,958 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 19:18:49] 2026-03-12 18:17:53,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 19:18:49] 2026-03-12 18:17:53,962 | INFO     | did not find any defunct processes belonging to 3570
[2026-03-12 19:18:49] 2026-03-12 18:17:53,964 | INFO     | did not find any defunct processes belonging to 3570
[2026-03-12 19:18:49] 2026-03-12 18:17:53,965 | INFO     | ready for new job
[2026-03-12 19:18:49] 2026-03-12 18:17:53,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 19:18:49] 2026-03-12 18:17:53,967 | INFO     | **************************************
[2026-03-12 19:18:49] 2026-03-12 18:17:53,968 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 19:18:49] 2026-03-12 18:17:53,968 | INFO     | **************************************
[2026-03-12 19:18:49] 2026-03-12 18:17:53,968 | INFO     | 
[2026-03-12 19:18:49] 2026-03-12 18:17:53,968 | INFO     | pilot is running in a VM
[2026-03-12 19:18:49] 2026-03-12 18:17:53,969 | INFO     | architecture information:
[2026-03-12 19:18:49] 2026-03-12 18:17:53,977 | INFO     | executing command: cat /etc/os-release
[2026-03-12 19:18:49] 2026-03-12 18:17:54,262 | INFO     | cat /etc/os-release:
[2026-03-12 19:18:49] NAME="CentOS Linux"
[2026-03-12 19:18:49] VERSION="7 (Core)"
[2026-03-12 19:18:49] ID="centos"
[2026-03-12 19:18:49] ID_LIKE="rhel fedora"
[2026-03-12 19:18:49] VERSION_ID="7"
[2026-03-12 19:18:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 19:18:49] ANSI_COLOR="0;31"
[2026-03-12 19:18:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 19:18:49] HOME_URL="https://www.centos.org/"
[2026-03-12 19:18:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 19:18:49] 
[2026-03-12 19:18:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 19:18:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 19:18:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 19:18:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 19:18:49] 
[2026-03-12 19:18:49] 2026-03-12 18:17:54,263 | INFO     | **************************************
[2026-03-12 19:18:49] 2026-03-12 18:17:54,766 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2026-03-12 19:18:49] 2026-03-12 18:17:54,841 | INFO     | sufficient remaining disk space (497146658816 B)
[2026-03-12 19:18:49] 2026-03-12 18:17:54,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 19:18:49] 2026-03-12 18:17:54,842 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 19:18:49] 2026-03-12 18:17:54,842 | INFO     | update_server=False
[2026-03-12 19:18:49] 2026-03-12 18:17:54,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 19:18:49] 2026-03-12 18:17:54,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 19:18:49] 2026-03-12 18:17:55,115 | INFO     | all payload control threads have been joined
[2026-03-12 19:18:49] 2026-03-12 18:17:55,333 | INFO     | all data control threads have been joined
[2026-03-12 19:18:49] 2026-03-12 18:17:55,405 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 19:18:49] 2026-03-12 18:17:55,520 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 19:18:49] 2026-03-12 18:17:55,520 | INFO     | aborting loop
[2026-03-12 19:18:49] 2026-03-12 18:17:55,847 | INFO     | [job] retrieve thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,053 | INFO     | [job] validate thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,121 | INFO     | [payload] control thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,339 | INFO     | [data] control thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,350 | INFO     | all job control threads have been joined
[2026-03-12 19:18:49] 2026-03-12 18:17:56,486 | INFO     | [payload] validate_post thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,526 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 19:18:49] 2026-03-12 18:17:56,526 | INFO     | [job] job monitor thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,760 | INFO     | [data] copytool_in thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,830 | INFO     | [payload] failed_post thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,850 | INFO     | [data] copytool_out thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,890 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,923 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:56,933 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:57,356 | INFO     | [job] control thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:57,532 | INFO     | [job] queue monitor thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:17:59,414 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:18:05,329 | INFO     | job.realtimelogging is not enabled
[2026-03-12 19:18:49] 2026-03-12 18:18:06,335 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 19:18:49] 2026-03-12 18:18:23,647 | INFO     | PID=31463 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 19:18:49] 2026-03-12 18:18:23,647 | INFO     | .. there are 9 such processes running
[2026-03-12 19:18:49] 2026-03-12 18:18:23,648 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 19:18:49] 2026-03-12 18:18:23,648 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 19:18:49] 2026-03-12 18:18:23,648 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 19:18:49] 2026-03-12 18:18:39,102 | INFO     | [monitor] cgroup control has ended
[2026-03-12 19:18:49] 2026-03-12 18:18:40,210 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139887748785984)>', '<ExcThread(monitor, started 139887437125376)>']
[2026-03-12 19:18:49] 2026-03-12 18:18:40,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 19:18:49] 2026-03-12 18:18:40,747 | INFO     | [monitor] control thread has ended
[2026-03-12 19:18:49] 2026-03-12 18:18:45,236 | INFO     | all workflow threads have been joined
[2026-03-12 19:18:49] 2026-03-12 18:18:45,236 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 19:18:49] 2026-03-12 18:18:45,236 | INFO     | traces error code: 0
[2026-03-12 19:18:49] 2026-03-12 18:18:45,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 19:18:49] 2026-03-12 18:18:45,491 [wrapper] ==== pilot stdout END ====
[2026-03-12 19:18:49] 2026-03-12 18:18:45,552 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 19:18:49] 2026-03-12 18:18:45,623 [wrapper] pilotpid: 31463
[2026-03-12 19:18:49] 2026-03-12 18:18:45,744 [wrapper] Pilot exit status: 0
[2026-03-12 19:18:49] 2026-03-12 18:18:46,247 [wrapper] pandaids: 7036901906
[2026-03-12 19:18:49] 2026-03-12 18:18:47,220 [wrapper] cleanup supervisor_pilot 12974 31464
[2026-03-12 19:18:49] 2026-03-12 18:18:47,265 [wrapper] Test setup, not cleaning
[2026-03-12 19:18:49] 2026-03-12 18:18:47,315 [wrapper] apfmon messages muted
[2026-03-12 19:18:49] 2026-03-12 18:18:47,389 [wrapper] ==== wrapper stdout END ====
[2026-03-12 19:18:49] 2026-03-12 18:18:47,480 [wrapper] ==== wrapper stderr END ====
[2026-03-12 19:18:49]  *** Error codes and diagnostics ***
[2026-03-12 19:18:49]     "exeErrorCode": 0,
[2026-03-12 19:18:49]     "exeErrorDiag": "",
[2026-03-12 19:18:49]     "pilotErrorCode": 0,
[2026-03-12 19:18:49]     "pilotErrorDiag": "",
[2026-03-12 19:18:49]  *** Listing of results directory ***
[2026-03-12 19:18:49] total 498452
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc    584627 Mar  4 01:25 pilot3.tar.gz
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc      5111 Mar  4 01:29 queuedata.json
[2026-03-12 19:18:49] -rwx------. 1 boinc boinc     36322 Mar  4 01:29 runpilot2-wrapper.sh
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc       100 Mar 12 13:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 19:18:49] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 13:37 run_atlas
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc       105 Mar 12 13:37 job.xml
[2026-03-12 19:18:49] -rw-r--r--. 2 boinc boinc 272005078 Mar 12 13:37 EVNT.48452872._000003.pool.root.1
[2026-03-12 19:18:49] -rw-r--r--. 2 boinc boinc     15845 Mar 12 13:37 start_atlas.sh
[2026-03-12 19:18:49] drwxrwx--x. 2 boinc boinc        68 Mar 12 13:37 shared
[2026-03-12 19:18:49] -rw-r--r--. 2 boinc boinc    597984 Mar 12 13:37 input.tar.gz
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc      6392 Mar 12 13:37 init_data.xml
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc         0 Mar 12 13:37 boinc_lockfile
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc      2633 Mar 12 13:37 pandaJob.out
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc       415 Mar 12 13:42 workernode_map.json
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc   1006233 Mar 12 13:43 agis_schedconf.cvmfs.json
[2026-03-12 19:18:49] drwx------. 5 boinc boinc      4096 Mar 12 13:43 pilot3
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc 227820667 Mar 12 19:16 HITS.48844253._000076.pool.root.1
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc       531 Mar 12 19:17 boinc_task_state.xml
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc      1012 Mar 12 19:17 memory_monitor_summary.json
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc   1511578 Mar 12 19:17 agis_ddmendpoints.agis.ALL.json
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc    549182 Mar 12 19:17 log.48844253._000076.job.log.tgz.1
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc      6305 Mar 12 19:17 heartbeat.json
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc        95 Mar 12 19:18 pilot_heartbeat.json
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc      8192 Mar 12 19:18 boinc_mmap_file
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc        28 Mar 12 19:18 wrapper_checkpoint.txt
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc      4953 Mar 12 19:18 pilotlog.txt
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc   2783335 Mar 12 19:18 log.48844253._000076.job.log.1
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc       357 Mar 12 19:18 output.list
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc       620 Mar 12 19:18 runtime_log
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc   3348480 Mar 12 19:18 result.tar.gz
[2026-03-12 19:18:49] -rw-------. 1 boinc boinc       656 Mar 12 19:18 VzrMDmVIpH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmQVILDm51kOln.diag
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc      8832 Mar 12 19:18 runtime_log.err
[2026-03-12 19:18:49] -rw-r--r--. 1 boinc boinc     20699 Mar 12 19:18 stderr.txt
[2026-03-12 19:18:50] HITS file was successfully produced:
[2026-03-12 19:18:50] -rw-------. 1 boinc boinc 227820667 Mar 12 19:16 shared/HITS.pool.root.1
[2026-03-12 19:18:50]  *** Contents of shared directory: ***
[2026-03-12 19:18:50] total 491988
[2026-03-12 19:18:50] -rw-r--r--. 2 boinc boinc 272005078 Mar 12 13:37 ATLAS.root_0
[2026-03-12 19:18:50] -rw-r--r--. 2 boinc boinc     15845 Mar 12 13:37 start_atlas.sh
[2026-03-12 19:18:50] -rw-r--r--. 2 boinc boinc    597984 Mar 12 13:37 input.tar.gz
[2026-03-12 19:18:50] -rw-------. 1 boinc boinc 227820667 Mar 12 19:16 HITS.pool.root.1
[2026-03-12 19:18:50] -rw-------. 1 boinc boinc   3348480 Mar 12 19:18 result.tar.gz
19:18:51 (27363): run_atlas exited; CPU time 78294.319754
19:18:51 (27363): called boinc_finish(0)

</stderr_txt>
]]>

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