Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:09:49 (2987623): wrapper (7.7.26015): starting
18:09:49 (2987623): wrapper: running run_atlas (--nthreads 3)
[2026-03-12 18:09:49] Arguments: --nthreads 3
[2026-03-12 18:09:49] Threads: 3
[2026-03-12 18:09:49] Checking for CVMFS
[2026-03-12 18:09:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 18:09:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 18:09:49] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 18:09:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 18:09:49] 2.9.2.0 2934 20169 89792 157209 1 49 22987955 36864001 0 130560 0 8309140 99.983 750152 5530 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 18:09:49] CVMFS is ok
[2026-03-12 18:09:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 18:09:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 18:09:49] Further information can be found at the LHC@home message board.
[2026-03-12 18:09:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 18:09:49] Checking for apptainer binary...
[2026-03-12 18:09:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 18:09:49] Running /usr/bin/apptainer --version
[2026-03-12 18:09:49] apptainer version 1.4.1-1.1
[2026-03-12 18:09:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 18:09:49] belleA263b
[2026-03-12 18:09:49] apptainer works
[2026-03-12 18:09:49] Set ATHENA_PROC_NUMBER=3
[2026-03-12 18:09:49] Set ATHENA_CORE_NUMBER=3
[2026-03-12 18:09:49] Starting ATLAS job with PandaID=7050365794
[2026-03-12 18:09:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 19:47:18]  *** The last 200 lines of the pilot log: ***
[2026-03-12 19:47:18] 2026-03-12 18:46:47,346 | INFO     | --- collectZombieJob: --- 10, [2996098]
[2026-03-12 19:47:18] 2026-03-12 18:46:47,346 | INFO     | zombie collector waiting for pid 2996098
[2026-03-12 19:47:18] 2026-03-12 18:46:47,346 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 19:47:18] 2026-03-12 18:46:47,346 | INFO     | collected zombie processes
[2026-03-12 19:47:18] 2026-03-12 18:46:47,346 | INFO     | will attempt to kill all subprocesses of pid=2996098
[2026-03-12 19:47:18] 2026-03-12 18:46:47,386 | INFO     | process IDs to be killed: [2996098] (in reverse order)
[2026-03-12 19:47:18] 2026-03-12 18:46:47,411 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 19:47:18] 2026-03-12 18:46:47,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 19:47:18] 2026-03-12 18:46:47,413 | INFO     | did not find any defunct processes belonging to 2996098
[2026-03-12 19:47:18] 2026-03-12 18:46:47,414 | INFO     | did not find any defunct processes belonging to 2996098
[2026-03-12 19:47:18] 2026-03-12 18:46:47,414 | INFO     | ready for new job
[2026-03-12 19:47:18] 2026-03-12 18:46:47,414 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 19:47:18] 2026-03-12 18:46:47,415 | INFO     | **************************************
[2026-03-12 19:47:18] 2026-03-12 18:46:47,415 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 19:47:18] 2026-03-12 18:46:47,415 | INFO     | **************************************
[2026-03-12 19:47:18] 2026-03-12 18:46:47,415 | INFO     | 
[2026-03-12 19:47:18] 2026-03-12 18:46:47,415 | INFO     | architecture information:
[2026-03-12 19:47:18] 2026-03-12 18:46:47,415 | INFO     | executing command: cat /etc/os-release
[2026-03-12 19:47:18] 2026-03-12 18:46:47,424 | INFO     | cat /etc/os-release:
[2026-03-12 19:47:18] NAME="CentOS Linux"
[2026-03-12 19:47:18] VERSION="7 (Core)"
[2026-03-12 19:47:18] ID="centos"
[2026-03-12 19:47:18] ID_LIKE="rhel fedora"
[2026-03-12 19:47:18] VERSION_ID="7"
[2026-03-12 19:47:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 19:47:18] ANSI_COLOR="0;31"
[2026-03-12 19:47:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 19:47:18] HOME_URL="https://www.centos.org/"
[2026-03-12 19:47:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 19:47:18] 
[2026-03-12 19:47:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 19:47:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 19:47:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 19:47:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 19:47:18] 
[2026-03-12 19:47:18] 2026-03-12 18:46:47,425 | INFO     | **************************************
[2026-03-12 19:47:18] 2026-03-12 18:46:47,928 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 19:47:18] 2026-03-12 18:46:47,942 | INFO     | sufficient remaining disk space (381793861632 B)
[2026-03-12 19:47:18] 2026-03-12 18:46:47,942 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 19:47:18] 2026-03-12 18:46:47,942 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 19:47:18] 2026-03-12 18:46:47,942 | INFO     | update_server=False
[2026-03-12 19:47:18] 2026-03-12 18:46:47,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 19:47:18] 2026-03-12 18:46:47,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 19:47:18] 2026-03-12 18:46:47,942 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 19:47:18] 2026-03-12 18:46:47,943 | INFO     | all job control threads have been joined
[2026-03-12 19:47:18] 2026-03-12 18:46:48,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 19:47:18] 2026-03-12 18:46:48,466 | INFO     | job.realtimelogging is not enabled
[2026-03-12 19:47:18] 2026-03-12 18:46:48,671 | INFO     | all payload control threads have been joined
[2026-03-12 19:47:18] 2026-03-12 18:46:48,742 | INFO     | all data control threads have been joined
[2026-03-12 19:47:18] 2026-03-12 18:46:48,948 | INFO     | [job] queue monitor thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:48,948 | INFO     | [job] retrieve thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:48,948 | INFO     | [job] control thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:49,136 | INFO     | [payload] validate_post thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:49,471 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:49,676 | INFO     | [payload] control thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:49,748 | INFO     | [data] control thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:50,154 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:50,165 | INFO     | [payload] failed_post thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:50,227 | INFO     | [job] validate thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:50,227 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:50,235 | INFO     | [data] copytool_out thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:50,257 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:50,346 | INFO     | [data] copytool_in thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:50,404 | WARNING  | process 2996098 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 19:47:18] 2026-03-12 18:46:50,431 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 19:47:18] 2026-03-12 18:46:50,465 | INFO     | number of running child processes to parent process 2996098: 1
[2026-03-12 19:47:18] 2026-03-12 18:46:50,465 | INFO     | maximum number of monitored processes: 6
[2026-03-12 19:47:18] 2026-03-12 18:46:50,465 | INFO     | aborting job monitoring since job object (job id=7050365794) has expired
[2026-03-12 19:47:18] 2026-03-12 18:46:50,465 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 19:47:18] 2026-03-12 18:46:50,465 | INFO     | will abort loop
[2026-03-12 19:47:18] 2026-03-12 18:46:51,471 | INFO     | [job] job monitor thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:46:51,949 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 19:47:18] 2026-03-12 18:47:07,162 | INFO     | [monitor] cgroup control has ended
[2026-03-12 19:47:18] 2026-03-12 18:47:07,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139690459731776)>', '<ExcThread(monitor, started 139689809913600)>']
[2026-03-12 19:47:18] 2026-03-12 18:47:12,818 | INFO     | all workflow threads have been joined
[2026-03-12 19:47:18] 2026-03-12 18:47:12,818 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 19:47:18] 2026-03-12 18:47:12,818 | INFO     | traces error code: 0
[2026-03-12 19:47:18] 2026-03-12 18:47:12,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 19:47:18] 2026-03-12 18:47:18,101 | INFO     | PID=2991673 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 19:47:18] 2026-03-12 18:47:18,102 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 19:47:18] 2026-03-12 18:47:18,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 19:47:18] 2026-03-12 18:47:18,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 19:47:18] 2026-03-12 18:47:18,102 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 19:47:18] 2026-03-12 18:47:18,102 | INFO     | [monitor] control thread has ended
[2026-03-12 19:47:18] 2026-03-12 18:47:18,147 [wrapper] ==== pilot stdout END ====
[2026-03-12 19:47:18] 2026-03-12 18:47:18,150 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 19:47:18] 2026-03-12 18:47:18,152 [wrapper] pilotpid: 2991673
[2026-03-12 19:47:18] 2026-03-12 18:47:18,155 [wrapper] Pilot exit status: 0
[2026-03-12 19:47:18] 2026-03-12 18:47:18,163 [wrapper] pandaids: 7050365794
[2026-03-12 19:47:18] 2026-03-12 18:47:18,179 [wrapper] cleanup supervisor_pilot 3001543 2991674
[2026-03-12 19:47:18] 2026-03-12 18:47:18,182 [wrapper] Test setup, not cleaning
[2026-03-12 19:47:18] 2026-03-12 18:47:18,184 [wrapper] apfmon messages muted
[2026-03-12 19:47:18] 2026-03-12 18:47:18,187 [wrapper] ==== wrapper stdout END ====
[2026-03-12 19:47:18] 2026-03-12 18:47:18,189 [wrapper] ==== wrapper stderr END ====
[2026-03-12 19:47:18]  *** Error codes and diagnostics ***
[2026-03-12 19:47:18]     "exeErrorCode": 0,
[2026-03-12 19:47:18]     "exeErrorDiag": "",
[2026-03-12 19:47:18]     "pilotErrorCode": 0,
[2026-03-12 19:47:18]     "pilotErrorDiag": "",
[2026-03-12 19:47:18]  *** Listing of results directory ***
[2026-03-12 19:47:18] total 410356
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc      5111 Mar 11 23:15 queuedata.json
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc    585013 Mar 11 23:15 pilot3.tar.gz
[2026-03-12 19:47:18] -rwx------ 1 boinc boinc     36322 Mar 11 23:15 runpilot2-wrapper.sh
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc       100 Mar 12 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 19:47:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 18:09 run_atlas
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc       105 Mar 12 18:09 job.xml
[2026-03-12 19:47:18] -rw-r--r-- 2 boinc boinc 212166489 Mar 12 18:09 EVNT.48967083._000487.pool.root.1
[2026-03-12 19:47:18] -rw-r--r-- 2 boinc boinc    597515 Mar 12 18:09 input.tar.gz
[2026-03-12 19:47:18] -rw-r--r-- 2 boinc boinc     15845 Mar 12 18:09 start_atlas.sh
[2026-03-12 19:47:18] drwxrwx--x 2 boinc boinc      4096 Mar 12 18:09 shared
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc         0 Mar 12 18:09 boinc_setup_complete
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc      6448 Mar 12 18:09 init_data.xml
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc         0 Mar 12 18:09 boinc_lockfile
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc      2563 Mar 12 18:09 pandaJob.out
[2026-03-12 19:47:18] -rw------- 1 boinc boinc   1006536 Mar 12 18:09 agis_schedconf.cvmfs.json
[2026-03-12 19:47:18] -rw------- 1 boinc boinc   1511578 Mar 12 18:09 agis_ddmendpoints.agis.ALL.json
[2026-03-12 19:47:18] -rw------- 1 boinc boinc       427 Mar 12 18:09 workernode_map.json
[2026-03-12 19:47:18] drwx------ 5 boinc boinc      4096 Mar 12 18:10 pilot3
[2026-03-12 19:47:18] -rw------- 1 boinc boinc        95 Mar 12 19:46 pilot_heartbeat.json
[2026-03-12 19:47:18] -rw------- 1 boinc boinc 201909184 Mar 12 19:46 HITS.48967085._011803.pool.root.1
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc       529 Mar 12 19:46 boinc_task_state.xml
[2026-03-12 19:47:18] -rw------- 1 boinc boinc      1012 Mar 12 19:46 memory_monitor_summary.json
[2026-03-12 19:47:18] -rw------- 1 boinc boinc    261918 Mar 12 19:46 log.48967085._011803.job.log.tgz.1
[2026-03-12 19:47:18] -rw------- 1 boinc boinc      6297 Mar 12 19:46 heartbeat.json
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc      8192 Mar 12 19:46 boinc_mmap_file
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc        27 Mar 12 19:46 wrapper_checkpoint.txt
[2026-03-12 19:47:18] -rw------- 1 boinc boinc       747 Mar 12 19:47 pilotlog.txt
[2026-03-12 19:47:18] -rw------- 1 boinc boinc    843446 Mar 12 19:47 log.48967085._011803.job.log.1
[2026-03-12 19:47:18] -rw------- 1 boinc boinc       357 Mar 12 19:47 output.list
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc       620 Mar 12 19:47 runtime_log
[2026-03-12 19:47:18] -rw------- 1 boinc boinc   1126400 Mar 12 19:47 result.tar.gz
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc      8916 Mar 12 19:47 runtime_log.err
[2026-03-12 19:47:18] -rw------- 1 boinc boinc       661 Mar 12 19:47 5HZMDmz0gK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmvAlLDmSQQLmm.diag
[2026-03-12 19:47:18] -rw-r--r-- 1 boinc boinc     11340 Mar 12 19:47 stderr.txt
[2026-03-12 19:47:18] HITS file was successfully produced:
[2026-03-12 19:47:18] -rw------- 1 boinc boinc 201909184 Mar 12 19:46 shared/HITS.pool.root.1
[2026-03-12 19:47:18]  *** Contents of shared directory: ***
[2026-03-12 19:47:18] total 406080
[2026-03-12 19:47:18] -rw-r--r-- 2 boinc boinc 212166489 Mar 12 18:09 ATLAS.root_0
[2026-03-12 19:47:18] -rw-r--r-- 2 boinc boinc    597515 Mar 12 18:09 input.tar.gz
[2026-03-12 19:47:18] -rw-r--r-- 2 boinc boinc     15845 Mar 12 18:09 start_atlas.sh
[2026-03-12 19:47:18] -rw------- 1 boinc boinc 201909184 Mar 12 19:46 HITS.pool.root.1
[2026-03-12 19:47:18] -rw------- 1 boinc boinc   1126400 Mar 12 19:47 result.tar.gz
19:47:19 (2987623): run_atlas exited; CPU time 16707.503272
19:47:19 (2987623): called boinc_finish(0)

</stderr_txt>
]]>

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