Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:58:23 (728417): wrapper (7.7.26015): starting
12:58:23 (728417): wrapper: running run_atlas (--nthreads 4)
[2026-03-13 12:58:23] Arguments: --nthreads 4
[2026-03-13 12:58:23] Threads: 4
[2026-03-13 12:58:23] Checking for CVMFS
[2026-03-13 12:58:23] No cvmfs_config command found, will try listing directly
[2026-03-13 12:58:23] CVMFS is ok
[2026-03-13 12:58:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 12:58:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 12:58:23] Further information can be found at the LHC@home message board.
[2026-03-13 12:58:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 12:58:23] Checking for apptainer binary...
[2026-03-13 12:58:23] which: no apptainer in ((null))
[2026-03-13 12:58:23] apptainer is not installed, using version from CVMFS
[2026-03-13 12:58:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 12:58:24] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot112/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-03-13 12:58:24] apptainer works
[2026-03-13 12:58:24] Set ATHENA_PROC_NUMBER=4
[2026-03-13 12:58:24] Set ATHENA_CORE_NUMBER=4
[2026-03-13 12:58:24] Starting ATLAS job with PandaID=7050365741
[2026-03-13 12:58:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot112/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 14:41:54]  *** The last 200 lines of the pilot log: ***
[2026-03-13 14:41:54] 2026-03-13 13:41:11,729 | INFO     | mean y: 2296423.9504950494
[2026-03-13 14:41:54] 2026-03-13 13:41:11,729 | INFO     | intersect: -59329655505.37026
[2026-03-13 14:41:54] 2026-03-13 13:41:11,729 | INFO     | chi2: 1.1092285157777915
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | sum of square deviations: 274312120.0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | sum of deviations: 10088891503.999998
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | mean x: 1773406035.5
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | mean y: 2294399.3958333335
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | intersect: -65221586647.851616
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | chi2: 1.1110839547686235
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | current chi2=1.1110839547686235 (change=-0.16727292568123672 %)
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | right removable region: 95
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | sum of square deviations: 274312120.0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | sum of deviations: 1035725496.5
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | mean x: 1773406340.5
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | mean y: 2328000.78125
[2026-03-13 14:41:54] 2026-03-13 13:41:11,730 | INFO     | intersect: -6693556098.363223
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | chi2: 0.00017523523251144818
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | current chi2=0.00017523523251144818 (change=99.98420206206215 %)
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | sum of square deviations: 233641590.0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | sum of deviations: 834187871.0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | mean x: 1773406493.0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | mean y: 2328748.6483516484
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | intersect: -6329395782.130806
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | chi2: 0.00012698207370951824
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | current chi2=0.00012698207370951824 (change=27.53621980601278 %)
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | sum of square deviations: 197203697.5
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | sum of deviations: 684016606.9999999
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | mean x: 1773406645.5
[2026-03-13 14:41:54] 2026-03-13 13:41:11,731 | INFO     | mean y: 2329378.418604651
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | intersect: -6148871698.762829
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | chi2: 0.00012411134113224457
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | current chi2=0.00012411134113224457 (change=2.2607384596984152 %)
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | left removable region: 30
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | sum of square deviations: 85136480.0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | sum of deviations: 190478539.00000003
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | mean x: 1773406920.0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | mean y: 2331425.1692307694
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | intersect: -3965367957.916491
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | chi2: 2.62492944043968e-05
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | current memory leak: 2.24 B/s (using 65 data points, chi2=0.00)
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | could have reported an average CPU frequency of 3554 MHz (7 samples)
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | ..............................
[2026-03-13 14:41:54] 2026-03-13 13:41:11,732 | INFO     | . Timing measurements:
[2026-03-13 14:41:54] 2026-03-13 13:41:11,733 | INFO     | . get job = 0 s
[2026-03-13 14:41:54] 2026-03-13 13:41:11,733 | INFO     | . initial setup = 5 s
[2026-03-13 14:41:54] 2026-03-13 13:41:11,733 | INFO     | . payload setup = 5 s
[2026-03-13 14:41:54] 2026-03-13 13:41:11,733 | INFO     | . stage-in = 0 s
[2026-03-13 14:41:54] 2026-03-13 13:41:11,733 | INFO     | . payload execution = 6131 s
[2026-03-13 14:41:54] 2026-03-13 13:41:11,733 | INFO     | . stage-out = 0 s
[2026-03-13 14:41:54] 2026-03-13 13:41:11,733 | INFO     | . log creation = 0 s
[2026-03-13 14:41:54] 2026-03-13 13:41:11,733 | INFO     | ..............................
[2026-03-13 14:41:54] 2026-03-13 13:41:11,780 | INFO     | 
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | job summary report
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | --------------------------------------------------
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | PanDA job id: 7050365741
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | task id: 48967085
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | errors: (none)
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | pilot state: finished 
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | transexitcode: 0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | exeerrorcode: 0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | exeerrordiag: 
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | exitcode: 0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | exitmsg: OK
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | cpuconsumptiontime: 23584 s
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | nevents: 400
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | neventsw: 0
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | pid: 746878
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | pgrp: 746878
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | corecount: 4
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | event service: False
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | sizes: {0: 2279821, 1: 2280282, 11: 2280282, 6140: 2307127, 6142: 2316205, 6143: 2316343}
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | --------------------------------------------------
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | 
[2026-03-13 14:41:54] 2026-03-13 13:41:11,781 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot112/slots/1
[2026-03-13 14:41:54] 2026-03-13 13:41:11,798 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | job 7050365741 has completed (purged errors)
[2026-03-13 14:41:54] 2026-03-13 13:41:11,799 | INFO     | overall cleanup function is called
[2026-03-13 14:41:54] 2026-03-13 13:41:12,807 | INFO     | --- collectZombieJob: --- 10, [746878]
[2026-03-13 14:41:54] 2026-03-13 13:41:12,807 | INFO     | zombie collector waiting for pid 746878
[2026-03-13 14:41:54] 2026-03-13 13:41:12,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 14:41:54] 2026-03-13 13:41:12,807 | INFO     | collected zombie processes
[2026-03-13 14:41:54] 2026-03-13 13:41:12,807 | INFO     | will attempt to kill all subprocesses of pid=746878
[2026-03-13 14:41:54] 2026-03-13 13:41:13,292 | INFO     | process IDs to be killed: [746878] (in reverse order)
[2026-03-13 14:41:54] 2026-03-13 13:41:13,524 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 14:41:54] 2026-03-13 13:41:13,528 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 14:41:54] 2026-03-13 13:41:13,559 | INFO     | did not find any defunct processes belonging to 746878
[2026-03-13 14:41:54] 2026-03-13 13:41:13,587 | INFO     | did not find any defunct processes belonging to 746878
[2026-03-13 14:41:54] 2026-03-13 13:41:13,587 | INFO     | ready for new job
[2026-03-13 14:41:54] 2026-03-13 13:41:13,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 14:41:54] 2026-03-13 13:41:13,588 | INFO     | **************************************
[2026-03-13 14:41:54] 2026-03-13 13:41:13,588 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 14:41:54] 2026-03-13 13:41:13,588 | INFO     | **************************************
[2026-03-13 14:41:54] 2026-03-13 13:41:13,588 | INFO     | 
[2026-03-13 14:41:54] 2026-03-13 13:41:13,594 | INFO     | architecture information:
[2026-03-13 14:41:54] 2026-03-13 13:41:13,594 | INFO     | executing command: cat /etc/os-release
[2026-03-13 14:41:54] 2026-03-13 13:41:13,609 | INFO     | cat /etc/os-release:
[2026-03-13 14:41:54] NAME="CentOS Linux"
[2026-03-13 14:41:54] VERSION="7 (Core)"
[2026-03-13 14:41:54] ID="centos"
[2026-03-13 14:41:54] ID_LIKE="rhel fedora"
[2026-03-13 14:41:54] VERSION_ID="7"
[2026-03-13 14:41:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 14:41:54] ANSI_COLOR="0;31"
[2026-03-13 14:41:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 14:41:54] HOME_URL="https://www.centos.org/"
[2026-03-13 14:41:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 14:41:54] 
[2026-03-13 14:41:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 14:41:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 14:41:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 14:41:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 14:41:54] 
[2026-03-13 14:41:54] 2026-03-13 13:41:13,609 | INFO     | **************************************
[2026-03-13 14:41:54] 2026-03-13 13:41:14,112 | INFO     | executing command: df -mP /var/lib/boinc/var/slot112/slots/1
[2026-03-13 14:41:54] 2026-03-13 13:41:14,130 | INFO     | sufficient remaining disk space (20196622336 B)
[2026-03-13 14:41:54] 2026-03-13 13:41:14,130 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 14:41:54] 2026-03-13 13:41:14,131 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 14:41:54] 2026-03-13 13:41:14,131 | INFO     | update_server=False
[2026-03-13 14:41:54] 2026-03-13 13:41:14,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 14:41:54] 2026-03-13 13:41:14,373 | INFO     | job.realtimelogging is not enabled
[2026-03-13 14:41:54] 2026-03-13 13:41:14,612 | WARNING  | process 746878 can no longer be monitored (due to stat problems) - aborting
[2026-03-13 14:41:54] 2026-03-13 13:41:14,634 | INFO     | all job control threads have been joined
[2026-03-13 14:41:54] 2026-03-13 13:41:14,837 | INFO     | all payload control threads have been joined
[2026-03-13 14:41:54] 2026-03-13 13:41:14,944 | INFO     | using path: /var/lib/boinc/var/slot112/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 14:41:54] 2026-03-13 13:41:14,944 | INFO     | using path: /var/lib/boinc/var/slot112/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 14:41:54] 2026-03-13 13:41:14,945 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-13 14:41:54] 2026-03-13 13:41:14,945 | WARNING  | maxPSS not found in memory monitor output
[2026-03-13 14:41:54] 2026-03-13 13:41:14,945 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot112/slots/1/PanDA_Pilot-7050365741/payload.stdout) since it has not been created yet
[2026-03-13 14:41:54] 2026-03-13 13:41:14,945 | INFO     | executing command: df -mP /var/lib/boinc/var/slot112/slots/1
[2026-03-13 14:41:54] 2026-03-13 13:41:14,962 | INFO     | sufficient remaining disk space (20196622336 B)
[2026-03-13 14:41:54] 2026-03-13 13:41:14,962 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-13 14:41:54] 2026-03-13 13:41:14,962 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot112/slots/1/PanDA_Pilot-7050365741/HITS.48967085._011750.pool.root.1 since it does not exist
[2026-03-13 14:41:54] 2026-03-13 13:41:15,130 | INFO     | all data control threads have been joined
[2026-03-13 14:41:54] 2026-03-13 13:41:15,136 | INFO     | [job] retrieve thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:15,337 | INFO     | [job] validate thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:15,354 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 14:41:54] 2026-03-13 13:41:15,363 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:15,378 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:15,432 | INFO     | number of running child processes to parent process 746878: 1
[2026-03-13 14:41:54] 2026-03-13 13:41:15,432 | INFO     | maximum number of monitored processes: 6
[2026-03-13 14:41:54] 2026-03-13 13:41:15,432 | INFO     | aborting job monitoring since job object (job id=7050365741) has expired
[2026-03-13 14:41:54] 2026-03-13 13:41:15,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 14:41:54] 2026-03-13 13:41:15,432 | INFO     | will abort loop
[2026-03-13 14:41:54] 2026-03-13 13:41:15,626 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:15,639 | INFO     | [job] control thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:15,817 | INFO     | [payload] validate_post thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:15,842 | INFO     | [payload] control thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:16,070 | INFO     | [data] copytool_in thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:16,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 14:41:54] 2026-03-13 13:41:16,115 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:16,135 | INFO     | [data] control thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:16,269 | INFO     | [payload] failed_post thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:16,438 | INFO     | [job] job monitor thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:16,790 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 14:41:54] 2026-03-13 13:41:17,360 | INFO     | [data] copytool_out thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:17,795 | INFO     | [job] queue monitor thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:20,114 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 14:41:54] 2026-03-13 13:41:44,928 | INFO     | PID=735045 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-13 14:41:54] 2026-03-13 13:41:44,928 | INFO     | .. there are 46 such processes running
[2026-03-13 14:41:54] 2026-03-13 13:41:44,929 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 14:41:54] 2026-03-13 13:41:44,929 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 14:41:54] 2026-03-13 13:41:44,929 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 14:41:54] 2026-03-13 13:41:47,075 | INFO     | [monitor] cgroup control has ended
[2026-03-13 14:41:54] 2026-03-13 13:41:48,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22763069470528)>', '<ExcThread(monitor, started 22762826766080)>']
[2026-03-13 14:41:54] 2026-03-13 13:41:48,955 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 14:41:54] 2026-03-13 13:41:48,955 | INFO     | [monitor] control thread has ended
[2026-03-13 14:41:54] 2026-03-13 13:41:53,690 | INFO     | all workflow threads have been joined
[2026-03-13 14:41:54] 2026-03-13 13:41:53,690 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 14:41:54] 2026-03-13 13:41:53,690 | INFO     | traces error code: 0
[2026-03-13 14:41:54] 2026-03-13 13:41:53,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 14:41:54] 2026-03-13 13:41:53,879 [wrapper] ==== pilot stdout END ====
[2026-03-13 14:41:54] 2026-03-13 13:41:53,882 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 14:41:54] 2026-03-13 13:41:53,883 [wrapper] pilotpid: 735045
[2026-03-13 14:41:54] 2026-03-13 13:41:53,886 [wrapper] Pilot exit status: 0
[2026-03-13 14:41:54] 2026-03-13 13:41:53,894 [wrapper] pandaids: 7050365741
[2026-03-13 14:41:54] 2026-03-13 13:41:54,032 [wrapper] cleanup supervisor_pilot 1637132 735046
[2026-03-13 14:41:54] 2026-03-13 13:41:54,035 [wrapper] Test setup, not cleaning
[2026-03-13 14:41:54] 2026-03-13 13:41:54,037 [wrapper] apfmon messages muted
[2026-03-13 14:41:54] 2026-03-13 13:41:54,039 [wrapper] ==== wrapper stdout END ====
[2026-03-13 14:41:54] 2026-03-13 13:41:54,040 [wrapper] ==== wrapper stderr END ====
[2026-03-13 14:41:54]  *** Error codes and diagnostics ***
[2026-03-13 14:41:54]     "exeErrorCode": 0,
[2026-03-13 14:41:54]     "exeErrorDiag": "",
[2026-03-13 14:41:54]     "pilotErrorCode": 0,
[2026-03-13 14:41:54]     "pilotErrorDiag": "",
[2026-03-13 14:41:54]  *** Listing of results directory ***
[2026-03-13 14:41:54] total 409184
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc      5111 Mar 11 23:15 queuedata.json
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc    585013 Mar 11 23:15 pilot3.tar.gz
[2026-03-13 14:41:54] -rwx------. 1 boinc boinc     36322 Mar 11 23:15 runpilot2-wrapper.sh
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc       100 Mar 13 12:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 14:41:54] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 12:58 run_atlas
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc       105 Mar 13 12:58 job.xml
[2026-03-13 14:41:54] -rw-r--r--. 2 boinc boinc 212550977 Mar 13 12:58 EVNT.48967083._000485.pool.root.1
[2026-03-13 14:41:54] -rw-r--r--. 2 boinc boinc     15845 Mar 13 12:58 start_atlas.sh
[2026-03-13 14:41:54] drwxrwx--x. 2 boinc boinc      4096 Mar 13 12:58 shared
[2026-03-13 14:41:54] -rw-r--r--. 2 boinc boinc    597527 Mar 13 12:58 input.tar.gz
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc      6709 Mar 13 12:58 init_data.xml
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc         0 Mar 13 12:58 boinc_lockfile
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc      2563 Mar 13 12:58 pandaJob.out
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc   1006495 Mar 13 12:58 agis_schedconf.cvmfs.json
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc   1511578 Mar 13 12:58 agis_ddmendpoints.agis.ALL.json
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc       445 Mar 13 12:58 workernode_map.json
[2026-03-13 14:41:54] drwx------. 5 boinc boinc      4096 Mar 13 12:58 pilot3
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc 200172043 Mar 13 14:40 HITS.48967085._011750.pool.root.1
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc      1031 Mar 13 14:41 memory_monitor_summary.json
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc       529 Mar 13 14:41 boinc_task_state.xml
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc    283518 Mar 13 14:41 log.48967085._011750.job.log.tgz.1
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc      6356 Mar 13 14:41 heartbeat.json
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc      8192 Mar 13 14:41 boinc_mmap_file
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc        27 Mar 13 14:41 wrapper_checkpoint.txt
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc        95 Mar 13 14:41 pilot_heartbeat.json
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc      6444 Mar 13 14:41 pilotlog.txt
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc    888525 Mar 13 14:41 log.48967085._011750.job.log.1
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc       357 Mar 13 14:41 output.list
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc       620 Mar 13 14:41 runtime_log
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc   1187840 Mar 13 14:41 result.tar.gz
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc      9221 Mar 13 14:41 runtime_log.err
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc       662 Mar 13 14:41 Hv8LDmt0gK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmPOiLDmWhi2Co.diag
[2026-03-13 14:41:54] -rw-r--r--. 1 boinc boinc     21268 Mar 13 14:41 stderr.txt
[2026-03-13 14:41:54] HITS file was successfully produced:
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc 200172043 Mar 13 14:40 shared/HITS.pool.root.1
[2026-03-13 14:41:54]  *** Contents of shared directory: ***
[2026-03-13 14:41:54] total 404824
[2026-03-13 14:41:54] -rw-r--r--. 2 boinc boinc 212550977 Mar 13 12:58 ATLAS.root_0
[2026-03-13 14:41:54] -rw-r--r--. 2 boinc boinc     15845 Mar 13 12:58 start_atlas.sh
[2026-03-13 14:41:54] -rw-r--r--. 2 boinc boinc    597527 Mar 13 12:58 input.tar.gz
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc 200172043 Mar 13 14:40 HITS.pool.root.1
[2026-03-13 14:41:54] -rw-------. 1 boinc boinc   1187840 Mar 13 14:41 result.tar.gz
14:41:55 (728417): run_atlas exited; CPU time 23869.189981
14:41:55 (728417): called boinc_finish(0)

</stderr_txt>
]]>

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