Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:09:36 (3213984): wrapper (7.7.26015): starting
18:09:36 (3213984): wrapper: running run_atlas (--nthreads 3)
[2026-03-12 18:09:36] Arguments: --nthreads 3
[2026-03-12 18:09:36] Threads: 3
[2026-03-12 18:09:36] Checking for CVMFS
[2026-03-12 18:09:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 18:09:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 18:09:36] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 18:09:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 18:09:36] 2.9.2.0 36558 21723 91388 157209 3 49 29491977 36864000 0 130560 0 8918496 99.983 813490 13502 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 18:09:36] CVMFS is ok
[2026-03-12 18:09:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 18:09:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 18:09:36] Further information can be found at the LHC@home message board.
[2026-03-12 18:09:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 18:09:36] Checking for apptainer binary...
[2026-03-12 18:09:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 18:09:36] Running /usr/bin/apptainer --version
[2026-03-12 18:09:36] apptainer version 1.4.1-1.1
[2026-03-12 18:09:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 18:09:37] magicA252
[2026-03-12 18:09:37] apptainer works
[2026-03-12 18:09:37] Set ATHENA_PROC_NUMBER=3
[2026-03-12 18:09:37] Set ATHENA_CORE_NUMBER=3
[2026-03-12 18:09:37] Starting ATLAS job with PandaID=7036809091
[2026-03-12 18:09:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 19:38:12]  *** The last 200 lines of the pilot log: ***
[2026-03-12 19:38:12] 2026-03-12 18:37:41,571 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 19:38:12] 2026-03-12 18:37:41,571 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 19:38:12] 2026-03-12 18:37:41,572 | INFO     | did not find any defunct processes belonging to 3222471
[2026-03-12 19:38:12] 2026-03-12 18:37:41,573 | INFO     | did not find any defunct processes belonging to 3222471
[2026-03-12 19:38:12] 2026-03-12 18:37:41,573 | INFO     | ready for new job
[2026-03-12 19:38:12] 2026-03-12 18:37:41,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 19:38:12] 2026-03-12 18:37:41,574 | INFO     | **************************************
[2026-03-12 19:38:12] 2026-03-12 18:37:41,574 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 19:38:12] 2026-03-12 18:37:41,574 | INFO     | **************************************
[2026-03-12 19:38:12] 2026-03-12 18:37:41,574 | INFO     | 
[2026-03-12 19:38:12] 2026-03-12 18:37:41,575 | INFO     | architecture information:
[2026-03-12 19:38:12] 2026-03-12 18:37:41,575 | INFO     | executing command: cat /etc/os-release
[2026-03-12 19:38:12] 2026-03-12 18:37:41,584 | INFO     | cat /etc/os-release:
[2026-03-12 19:38:12] NAME="CentOS Linux"
[2026-03-12 19:38:12] VERSION="7 (Core)"
[2026-03-12 19:38:12] ID="centos"
[2026-03-12 19:38:12] ID_LIKE="rhel fedora"
[2026-03-12 19:38:12] VERSION_ID="7"
[2026-03-12 19:38:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 19:38:12] ANSI_COLOR="0;31"
[2026-03-12 19:38:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 19:38:12] HOME_URL="https://www.centos.org/"
[2026-03-12 19:38:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 19:38:12] 
[2026-03-12 19:38:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 19:38:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 19:38:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 19:38:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 19:38:12] 
[2026-03-12 19:38:12] 2026-03-12 18:37:41,585 | INFO     | **************************************
[2026-03-12 19:38:12] 2026-03-12 18:37:42,087 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 19:38:12] 2026-03-12 18:37:42,100 | INFO     | sufficient remaining disk space (374667739136 B)
[2026-03-12 19:38:12] 2026-03-12 18:37:42,100 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 19:38:12] 2026-03-12 18:37:42,101 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 19:38:12] 2026-03-12 18:37:42,101 | INFO     | update_server=False
[2026-03-12 19:38:12] 2026-03-12 18:37:42,101 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 19:38:12] 2026-03-12 18:37:42,101 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 19:38:12] 2026-03-12 18:37:42,101 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 19:38:12] 2026-03-12 18:37:42,101 | INFO     | aborting loop
[2026-03-12 19:38:12] 2026-03-12 18:37:42,308 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 19:38:12] 2026-03-12 18:37:42,771 | INFO     | all data control threads have been joined
[2026-03-12 19:38:12] 2026-03-12 18:37:42,897 | INFO     | all job control threads have been joined
[2026-03-12 19:38:12] 2026-03-12 18:37:43,101 | INFO     | [job] retrieve thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:43,106 | INFO     | [job] queue monitor thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:43,106 | INFO     | [job] job monitor thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:43,265 | INFO     | all payload control threads have been joined
[2026-03-12 19:38:12] 2026-03-12 18:37:43,742 | INFO     | [payload] failed_post thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:43,777 | INFO     | [data] control thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:43,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 19:38:12] 2026-03-12 18:37:43,899 | INFO     | [job] control thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:44,023 | INFO     | [job] validate thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:44,119 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:44,148 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:44,177 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:44,269 | INFO     | [data] copytool_in thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:44,271 | INFO     | [payload] control thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:44,314 | INFO     | [data] copytool_out thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:44,655 | INFO     | [payload] validate_post thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:47,790 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:52,561 | INFO     | job.realtimelogging is not enabled
[2026-03-12 19:38:12] 2026-03-12 18:37:53,249 | INFO     | [monitor] cgroup control has ended
[2026-03-12 19:38:12] 2026-03-12 18:37:53,567 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 19:38:12] 2026-03-12 18:37:53,817 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139816138237760)>', '<ExcThread(monitor, started 139815337060096)>']
[2026-03-12 19:38:12] 2026-03-12 18:37:58,843 | INFO     | all workflow threads have been joined
[2026-03-12 19:38:12] 2026-03-12 18:37:58,843 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 19:38:12] 2026-03-12 18:37:58,844 | INFO     | traces error code: 0
[2026-03-12 19:38:12] 2026-03-12 18:37:58,844 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 19:38:12] 2026-03-12 18:38:12,316 | INFO     | PID=3218029 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 19:38:12] 2026-03-12 18:38:12,317 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 19:38:12] 2026-03-12 18:38:12,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 19:38:12] 2026-03-12 18:38:12,317 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 19:38:12] 2026-03-12 18:38:12,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 19:38:12] 2026-03-12 18:38:12,317 | INFO     | [monitor] control thread has ended
[2026-03-12 19:38:12] 2026-03-12 18:38:12,363 [wrapper] ==== pilot stdout END ====
[2026-03-12 19:38:12] 2026-03-12 18:38:12,365 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 19:38:12] 2026-03-12 18:38:12,368 [wrapper] pilotpid: 3218029
[2026-03-12 19:38:12] 2026-03-12 18:38:12,370 [wrapper] Pilot exit status: 0
[2026-03-12 19:38:12] 2026-03-12 18:38:12,378 [wrapper] pandaids: 7036809091
[2026-03-12 19:38:12] 2026-03-12 18:38:12,395 [wrapper] cleanup supervisor_pilot 3227502 3218030
[2026-03-12 19:38:12] 2026-03-12 18:38:12,398 [wrapper] Test setup, not cleaning
[2026-03-12 19:38:12] 2026-03-12 18:38:12,401 [wrapper] apfmon messages muted
[2026-03-12 19:38:12] 2026-03-12 18:38:12,403 [wrapper] ==== wrapper stdout END ====
[2026-03-12 19:38:12] 2026-03-12 18:38:12,406 [wrapper] ==== wrapper stderr END ====
[2026-03-12 19:38:12]  *** Error codes and diagnostics ***
[2026-03-12 19:38:12]     "exeErrorCode": 0,
[2026-03-12 19:38:12]     "exeErrorDiag": "",
[2026-03-12 19:38:12]     "pilotErrorCode": 0,
[2026-03-12 19:38:12]     "pilotErrorDiag": "",
[2026-03-12 19:38:12]  *** Listing of results directory ***
[2026-03-12 19:38:12] total 495388
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc    584627 Mar  4 00:05 pilot3.tar.gz
[2026-03-12 19:38:12] -rwx------ 1 boinc boinc     36322 Mar  4 00:16 runpilot2-wrapper.sh
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc      5111 Mar  4 00:18 queuedata.json
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc       100 Mar 12 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 19:38:12] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 18:09 run_atlas
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc       105 Mar 12 18:09 job.xml
[2026-03-12 19:38:12] -rw-r--r-- 2 boinc boinc 295317416 Mar 12 18:09 EVNT.48717036._000050.pool.root.1
[2026-03-12 19:38:12] -rw-r--r-- 2 boinc boinc    597961 Mar 12 18:09 input.tar.gz
[2026-03-12 19:38:12] -rw-r--r-- 2 boinc boinc     15845 Mar 12 18:09 start_atlas.sh
[2026-03-12 19:38:12] drwxrwx--x 2 boinc boinc      4096 Mar 12 18:09 shared
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc         0 Mar 12 18:09 boinc_setup_complete
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc      6447 Mar 12 18:09 init_data.xml
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc         0 Mar 12 18:09 boinc_lockfile
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc      2596 Mar 12 18:09 pandaJob.out
[2026-03-12 19:38:12] -rw------- 1 boinc boinc   1006536 Mar 12 18:09 agis_schedconf.cvmfs.json
[2026-03-12 19:38:12] -rw------- 1 boinc boinc   1511578 Mar 12 18:09 agis_ddmendpoints.agis.ALL.json
[2026-03-12 19:38:12] -rw------- 1 boinc boinc       425 Mar 12 18:09 workernode_map.json
[2026-03-12 19:38:12] drwx------ 5 boinc boinc      4096 Mar 12 18:09 pilot3
[2026-03-12 19:38:12] -rw------- 1 boinc boinc 205982434 Mar 12 19:37 HITS.48868979._001238.pool.root.1
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc       529 Mar 12 19:37 boinc_task_state.xml
[2026-03-12 19:38:12] -rw------- 1 boinc boinc      1021 Mar 12 19:37 memory_monitor_summary.json
[2026-03-12 19:38:12] -rw------- 1 boinc boinc    258098 Mar 12 19:37 log.48868979._001238.job.log.tgz.1
[2026-03-12 19:38:12] -rw------- 1 boinc boinc      6301 Mar 12 19:37 heartbeat.json
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc      8192 Mar 12 19:37 boinc_mmap_file
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc        27 Mar 12 19:37 wrapper_checkpoint.txt
[2026-03-12 19:38:12] -rw------- 1 boinc boinc       747 Mar 12 19:38 pilotlog.txt
[2026-03-12 19:38:12] -rw------- 1 boinc boinc        95 Mar 12 19:38 pilot_heartbeat.json
[2026-03-12 19:38:12] -rw------- 1 boinc boinc    770328 Mar 12 19:38 log.48868979._001238.job.log.1
[2026-03-12 19:38:12] -rw------- 1 boinc boinc       357 Mar 12 19:38 output.list
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc       620 Mar 12 19:38 runtime_log
[2026-03-12 19:38:12] -rw------- 1 boinc boinc   1044480 Mar 12 19:38 result.tar.gz
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc      8911 Mar 12 19:38 runtime_log.err
[2026-03-12 19:38:12] -rw------- 1 boinc boinc       660 Mar 12 19:38 5nPODm19nH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJRILDmdvMjnn.diag
[2026-03-12 19:38:12] -rw-r--r-- 1 boinc boinc     10063 Mar 12 19:38 stderr.txt
[2026-03-12 19:38:12] HITS file was successfully produced:
[2026-03-12 19:38:12] -rw------- 1 boinc boinc 205982434 Mar 12 19:37 shared/HITS.pool.root.1
[2026-03-12 19:38:12]  *** Contents of shared directory: ***
[2026-03-12 19:38:12] total 491180
[2026-03-12 19:38:12] -rw-r--r-- 2 boinc boinc 295317416 Mar 12 18:09 ATLAS.root_0
[2026-03-12 19:38:12] -rw-r--r-- 2 boinc boinc    597961 Mar 12 18:09 input.tar.gz
[2026-03-12 19:38:12] -rw-r--r-- 2 boinc boinc     15845 Mar 12 18:09 start_atlas.sh
[2026-03-12 19:38:12] -rw------- 1 boinc boinc 205982434 Mar 12 19:37 HITS.pool.root.1
[2026-03-12 19:38:12] -rw------- 1 boinc boinc   1044480 Mar 12 19:38 result.tar.gz
19:38:13 (3213984): run_atlas exited; CPU time 15068.634459
19:38:13 (3213984): called boinc_finish(0)

</stderr_txt>
]]>

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