Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:49:30 (801853): wrapper (7.7.26015): starting
05:49:30 (801853): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 05:49:31] Arguments: --nthreads 4
[2026-03-14 05:49:31] Threads: 4
[2026-03-14 05:49:31] Checking for CVMFS
[2026-03-14 05:49:31] No cvmfs_config command found, will try listing directly
[2026-03-14 05:49:31] CVMFS is ok
[2026-03-14 05:49:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 05:49:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 05:49:31] Further information can be found at the LHC@home message board.
[2026-03-14 05:49:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 05:49:31] Checking for apptainer binary...
[2026-03-14 05:49:31] which: no apptainer in ((null))
[2026-03-14 05:49:31] apptainer is not installed, using version from CVMFS
[2026-03-14 05:49:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 05:49:31] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2026-03-14 05:49:31] apptainer works
[2026-03-14 05:49:31] Set ATHENA_PROC_NUMBER=4
[2026-03-14 05:49:31] Set ATHENA_CORE_NUMBER=4
[2026-03-14 05:49:31] Starting ATLAS job with PandaID=7050079245
[2026-03-14 05:49:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 09:46:38]  *** The last 200 lines of the pilot log: ***
[2026-03-14 09:46:38] 2026-03-14 08:45:36,975 | INFO     | preparing for final server update for job 7050079245 in state='finished'
[2026-03-14 09:46:38] 2026-03-14 08:45:37,571 | INFO     | time since job start (14147s) is within the limit (345600.0s)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,631 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,632 | INFO     | reading metadata from: /var/lib/boinc/var/slot24/slots/0/PanDA_Pilot-7050079245/jobReport.json
[2026-03-14 09:46:38] 2026-03-14 08:45:37,634 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot24/slots/0/workernode_map.json
[2026-03-14 09:46:38] 2026-03-14 08:45:37,635 | INFO     | this job has now completed (state=finished)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,635 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,635 | INFO     | log transfer has been attempted: DONE
[2026-03-14 09:46:38] 2026-03-14 08:45:37,635 | INFO     | job 7050079245 has finished - writing final server update
[2026-03-14 09:46:38] 2026-03-14 08:45:37,636 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_712939/.job.ad'
[2026-03-14 09:46:38] 2026-03-14 08:45:37,636 | INFO     | total number of processed events: 400 (read)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,647 | INFO     | using path: /var/lib/boinc/var/slot24/slots/0/PanDA_Pilot-7050079245/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,648 | INFO     | extracted standard info from prmon json
[2026-03-14 09:46:38] 2026-03-14 08:45:37,648 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 09:46:38] 2026-03-14 08:45:37,648 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 09:46:38] 2026-03-14 08:45:37,648 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 09:46:38] 2026-03-14 08:45:37,648 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 09:46:38] 2026-03-14 08:45:37,652 | INFO     | fitting pss+swap vs Time
[2026-03-14 09:46:38] 2026-03-14 08:45:37,653 | INFO     | sum of square deviations: 3871990738.0
[2026-03-14 09:46:38] 2026-03-14 08:45:37,654 | INFO     | sum of deviations: -3430054888.0000033
[2026-03-14 09:46:38] 2026-03-14 08:45:37,654 | INFO     | mean x: 1773470851.5
[2026-03-14 09:46:38] 2026-03-14 08:45:37,655 | INFO     | mean y: 2340722.396551724
[2026-03-14 09:46:38] 2026-03-14 08:45:37,655 | INFO     | intersect: 1573393644.402044
[2026-03-14 09:46:38] 2026-03-14 08:45:37,655 | INFO     | chi2: 1.4781069408521972
[2026-03-14 09:46:38] 2026-03-14 08:45:37,656 | INFO     | sum of square deviations: 3627000098.0
[2026-03-14 09:46:38] 2026-03-14 08:45:37,657 | INFO     | sum of deviations: -2970933080.999998
[2026-03-14 09:46:38] 2026-03-14 08:45:37,657 | INFO     | mean x: 1773470699.0
[2026-03-14 09:46:38] 2026-03-14 08:45:37,657 | INFO     | mean y: 2341003.334801762
[2026-03-14 09:46:38] 2026-03-14 08:45:37,657 | INFO     | intersect: 1455018870.850892
[2026-03-14 09:46:38] 2026-03-14 08:45:37,658 | INFO     | chi2: 1.4778461558889502
[2026-03-14 09:46:38] 2026-03-14 08:45:37,658 | INFO     | current chi2=1.4778461558889502 (change=0.017643172901728035 %)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,658 | INFO     | right removable region: 226
[2026-03-14 09:46:38] 2026-03-14 08:45:37,658 | INFO     | sum of square deviations: 3627000098.0
[2026-03-14 09:46:38] 2026-03-14 08:45:37,660 | INFO     | sum of deviations: -26899273639.000004
[2026-03-14 09:46:38] 2026-03-14 08:45:37,660 | INFO     | mean x: 1773471004.0
[2026-03-14 09:46:38] 2026-03-14 08:45:37,660 | INFO     | mean y: 2355105.154185022
[2026-03-14 09:46:38] 2026-03-14 08:45:37,660 | INFO     | intersect: 13155120624.442038
[2026-03-14 09:46:38] 2026-03-14 08:45:37,660 | INFO     | chi2: 0.26013184482775825
[2026-03-14 09:46:38] 2026-03-14 08:45:37,660 | INFO     | current chi2=0.26013184482775825 (change=82.4010132394223 %)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,661 | INFO     | sum of square deviations: 3392567795.5
[2026-03-14 09:46:38] 2026-03-14 08:45:37,662 | INFO     | sum of deviations: -18603353274.500004
[2026-03-14 09:46:38] 2026-03-14 08:45:37,662 | INFO     | mean x: 1773471156.5
[2026-03-14 09:46:38] 2026-03-14 08:45:37,662 | INFO     | mean y: 2349692.0045045046
[2026-03-14 09:46:38] 2026-03-14 08:45:37,662 | INFO     | intersect: 9727287389.717667
[2026-03-14 09:46:38] 2026-03-14 08:45:37,663 | INFO     | chi2: 0.2248623494353219
[2026-03-14 09:46:38] 2026-03-14 08:45:37,663 | INFO     | current chi2=0.2248623494353219 (change=13.55831517505649 %)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,663 | INFO     | left removable region: 20
[2026-03-14 09:46:38] 2026-03-14 08:45:37,663 | INFO     | sum of square deviations: 2710627567.5
[2026-03-14 09:46:38] 2026-03-14 08:45:37,665 | INFO     | sum of deviations: 5879169050.500001
[2026-03-14 09:46:38] 2026-03-14 08:45:37,665 | INFO     | mean x: 1773471278.5
[2026-03-14 09:46:38] 2026-03-14 08:45:37,665 | INFO     | mean y: 2332773.36407767
[2026-03-14 09:46:38] 2026-03-14 08:45:37,665 | INFO     | intersect: -3844207259.475704
[2026-03-14 09:46:38] 2026-03-14 08:45:37,665 | INFO     | chi2: 0.00040032891899703427
[2026-03-14 09:46:38] 2026-03-14 08:45:37,665 | INFO     | current memory leak: 2.17 B/s (using 206 data points, chi2=0.00)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,666 | INFO     | could have reported an average CPU frequency of 2553 MHz (11 samples)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,666 | INFO     | ..............................
[2026-03-14 09:46:38] 2026-03-14 08:45:37,666 | INFO     | . Timing measurements:
[2026-03-14 09:46:38] 2026-03-14 08:45:37,666 | INFO     | . get job = 0 s
[2026-03-14 09:46:38] 2026-03-14 08:45:37,666 | INFO     | . initial setup = 6 s
[2026-03-14 09:46:38] 2026-03-14 08:45:37,666 | INFO     | . payload setup = 7 s
[2026-03-14 09:46:38] 2026-03-14 08:45:37,666 | INFO     | . stage-in = 0 s
[2026-03-14 09:46:38] 2026-03-14 08:45:37,666 | INFO     | . payload execution = 14130 s
[2026-03-14 09:46:38] 2026-03-14 08:45:37,667 | INFO     | . stage-out = 1 s
[2026-03-14 09:46:38] 2026-03-14 08:45:37,667 | INFO     | . log creation = 0 s
[2026-03-14 09:46:38] 2026-03-14 08:45:37,667 | INFO     | ..............................
[2026-03-14 09:46:38] 2026-03-14 08:45:37,806 | INFO     | 
[2026-03-14 09:46:38] 2026-03-14 08:45:37,806 | INFO     | job summary report
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | --------------------------------------------------
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | PanDA job id: 7050079245
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | task id: 48967094
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | errors: (none)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | pilot state: finished 
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | transexitcode: 0
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | exeerrorcode: 0
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | exeerrordiag: 
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | exitcode: 0
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | exitmsg: OK
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | cpuconsumptiontime: 52783 s
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | nevents: 400
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | neventsw: 0
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | pid: 810746
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | pgrp: 810746
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | corecount: 4
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | event service: False
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | sizes: {0: 2279134, 1: 2280263, 2: 2280263, 14141: 2311099, 14144: 2320175, 14146: 2320313}
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | --------------------------------------------------
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | 
[2026-03-14 09:46:38] 2026-03-14 08:45:37,807 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot24/slots/0
[2026-03-14 09:46:38] 2026-03-14 08:45:37,829 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,830 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,830 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,830 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,830 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,830 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,830 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,830 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,830 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,830 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 09:46:38] 2026-03-14 08:45:37,831 | INFO     | job 7050079245 has completed (purged errors)
[2026-03-14 09:46:38] 2026-03-14 08:45:37,832 | INFO     | overall cleanup function is called
[2026-03-14 09:46:38] 2026-03-14 08:45:38,839 | INFO     | --- collectZombieJob: --- 10, [810746]
[2026-03-14 09:46:38] 2026-03-14 08:45:38,840 | INFO     | zombie collector waiting for pid 810746
[2026-03-14 09:46:38] 2026-03-14 08:45:38,840 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 09:46:38] 2026-03-14 08:45:38,840 | INFO     | collected zombie processes
[2026-03-14 09:46:38] 2026-03-14 08:45:38,840 | INFO     | will attempt to kill all subprocesses of pid=810746
[2026-03-14 09:46:38] 2026-03-14 08:45:39,246 | INFO     | process IDs to be killed: [810746] (in reverse order)
[2026-03-14 09:46:38] 2026-03-14 08:45:39,392 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 09:46:38] 2026-03-14 08:45:39,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 09:46:38] 2026-03-14 08:45:39,405 | INFO     | did not find any defunct processes belonging to 810746
[2026-03-14 09:46:38] 2026-03-14 08:45:39,417 | INFO     | did not find any defunct processes belonging to 810746
[2026-03-14 09:46:38] 2026-03-14 08:45:39,417 | INFO     | ready for new job
[2026-03-14 09:46:38] 2026-03-14 08:45:39,418 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 09:46:38] 2026-03-14 08:45:39,420 | INFO     | **************************************
[2026-03-14 09:46:38] 2026-03-14 08:45:39,420 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 09:46:38] 2026-03-14 08:45:39,420 | INFO     | **************************************
[2026-03-14 09:46:38] 2026-03-14 08:45:39,420 | INFO     | 
[2026-03-14 09:46:38] 2026-03-14 08:45:39,424 | INFO     | architecture information:
[2026-03-14 09:46:38] 2026-03-14 08:45:39,425 | INFO     | executing command: cat /etc/os-release
[2026-03-14 09:46:38] 2026-03-14 08:45:39,442 | INFO     | cat /etc/os-release:
[2026-03-14 09:46:38] NAME="CentOS Linux"
[2026-03-14 09:46:38] VERSION="7 (Core)"
[2026-03-14 09:46:38] ID="centos"
[2026-03-14 09:46:38] ID_LIKE="rhel fedora"
[2026-03-14 09:46:38] VERSION_ID="7"
[2026-03-14 09:46:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 09:46:38] ANSI_COLOR="0;31"
[2026-03-14 09:46:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 09:46:38] HOME_URL="https://www.centos.org/"
[2026-03-14 09:46:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 09:46:38] 
[2026-03-14 09:46:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 09:46:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 09:46:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 09:46:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 09:46:38] 
[2026-03-14 09:46:38] 2026-03-14 08:45:39,443 | INFO     | **************************************
[2026-03-14 09:46:38] 2026-03-14 08:45:39,946 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/0
[2026-03-14 09:46:38] 2026-03-14 08:45:39,966 | INFO     | sufficient remaining disk space (20982005760 B)
[2026-03-14 09:46:38] 2026-03-14 08:45:39,966 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 09:46:38] 2026-03-14 08:45:39,967 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 09:46:38] 2026-03-14 08:45:39,967 | INFO     | update_server=False
[2026-03-14 09:46:38] 2026-03-14 08:45:39,967 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 09:46:38] 2026-03-14 08:45:39,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 09:46:38] 2026-03-14 08:45:39,967 | INFO     | aborting loop
[2026-03-14 09:46:38] 2026-03-14 08:45:40,111 | INFO     | all data control threads have been joined
[2026-03-14 09:46:38] 2026-03-14 08:45:40,457 | INFO     | all job control threads have been joined
[2026-03-14 09:46:38] 2026-03-14 08:45:40,972 | INFO     | [job] retrieve thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:40,973 | INFO     | [job] job monitor thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:41,116 | INFO     | [data] control thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:41,122 | INFO     | [payload] failed_post thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:41,137 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 09:46:38] 2026-03-14 08:45:41,457 | INFO     | all payload control threads have been joined
[2026-03-14 09:46:38] 2026-03-14 08:45:41,462 | INFO     | [job] control thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:41,687 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:41,864 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 09:46:38] 2026-03-14 08:45:42,230 | INFO     | [data] copytool_in thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:42,285 | INFO     | [payload] validate_post thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:42,386 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:42,393 | INFO     | [job] validate thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:42,410 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:42,460 | INFO     | [payload] control thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:42,466 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:42,763 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 09:46:38] 2026-03-14 08:45:43,142 | INFO     | [data] copytool_out thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:43,768 | INFO     | [job] queue monitor thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:45:45,869 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 09:46:38] 2026-03-14 08:46:11,130 | INFO     | PID=805995 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 09:46:38] 2026-03-14 08:46:11,131 | INFO     | .. there are 12 such processes running
[2026-03-14 09:46:38] 2026-03-14 08:46:11,132 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 09:46:38] 2026-03-14 08:46:11,132 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 09:46:38] 2026-03-14 08:46:11,132 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 09:46:38] 2026-03-14 08:46:13,714 | INFO     | [monitor] cgroup control has ended
[2026-03-14 09:46:38] 2026-03-14 08:46:14,582 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22359389845312)>', '<ExcThread(monitor, started 22359145973504)>']
[2026-03-14 09:46:38] 2026-03-14 08:46:15,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 09:46:38] 2026-03-14 08:46:15,153 | INFO     | [monitor] control thread has ended
[2026-03-14 09:46:38] 2026-03-14 08:46:19,607 | INFO     | all workflow threads have been joined
[2026-03-14 09:46:38] 2026-03-14 08:46:19,608 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 09:46:38] 2026-03-14 08:46:19,608 | INFO     | traces error code: 0
[2026-03-14 09:46:38] 2026-03-14 08:46:19,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 09:46:38] 2026-03-14 08:46:19,775 [wrapper] ==== pilot stdout END ====
[2026-03-14 09:46:38] 2026-03-14 08:46:19,779 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 09:46:38] 2026-03-14 08:46:19,783 [wrapper] pilotpid: 805995
[2026-03-14 09:46:38] 2026-03-14 08:46:19,786 [wrapper] Pilot exit status: 0
[2026-03-14 09:46:38] 2026-03-14 08:46:19,798 [wrapper] pandaids: 7050079245
[2026-03-14 09:46:38] 2026-03-14 08:46:19,872 [wrapper] cleanup supervisor_pilot 1082001 805996
[2026-03-14 09:46:38] 2026-03-14 08:46:19,875 [wrapper] Test setup, not cleaning
[2026-03-14 09:46:38] 2026-03-14 08:46:19,878 [wrapper] apfmon messages muted
[2026-03-14 09:46:38] 2026-03-14 08:46:19,880 [wrapper] ==== wrapper stdout END ====
[2026-03-14 09:46:38] 2026-03-14 08:46:19,882 [wrapper] ==== wrapper stderr END ====
[2026-03-14 09:46:38]  *** Error codes and diagnostics ***
[2026-03-14 09:46:38]     "exeErrorCode": 0,
[2026-03-14 09:46:38]     "exeErrorDiag": "",
[2026-03-14 09:46:38]     "pilotErrorCode": 0,
[2026-03-14 09:46:38]     "pilotErrorDiag": "",
[2026-03-14 09:46:38]  *** Listing of results directory ***
[2026-03-14 09:46:38] total 421996
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc    585013 Mar 11 20:14 pilot3.tar.gz
[2026-03-14 09:46:38] -rwx------. 1 boinc boinc     36322 Mar 11 20:17 runpilot2-wrapper.sh
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc      5111 Mar 11 20:17 queuedata.json
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc       100 Mar 14 05:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 09:46:38] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 05:49 run_atlas
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc       105 Mar 14 05:49 job.xml
[2026-03-14 09:46:38] -rw-r--r--. 2 boinc boinc 220814590 Mar 14 05:49 EVNT.48967092._000178.pool.root.1
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc      6563 Mar 14 05:49 init_data.xml
[2026-03-14 09:46:38] -rw-r--r--. 2 boinc boinc     15845 Mar 14 05:49 start_atlas.sh
[2026-03-14 09:46:38] drwxrwx--x. 2 boinc boinc      4096 Mar 14 05:49 shared
[2026-03-14 09:46:38] -rw-r--r--. 2 boinc boinc    597535 Mar 14 05:49 input.tar.gz
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc         0 Mar 14 05:49 boinc_lockfile
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc      2597 Mar 14 05:49 pandaJob.out
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc   1004579 Mar 14 05:49 agis_schedconf.cvmfs.json
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc       447 Mar 14 05:49 workernode_map.json
[2026-03-14 09:46:38] drwx------. 5 boinc boinc      4096 Mar 14 05:49 pilot3
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc       529 Mar 14 09:44 boinc_task_state.xml
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc 202586803 Mar 14 09:44 HITS.48967094._003975.pool.root.1
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc      1033 Mar 14 09:45 memory_monitor_summary.json
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc   1511579 Mar 14 09:45 agis_ddmendpoints.agis.ALL.json
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc    414061 Mar 14 09:45 log.48967094._003975.job.log.tgz.1
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc      6395 Mar 14 09:45 heartbeat.json
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc        95 Mar 14 09:46 pilot_heartbeat.json
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc      4828 Mar 14 09:46 pilotlog.txt
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc   1978841 Mar 14 09:46 log.48967094._003975.job.log.1
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc       357 Mar 14 09:46 output.list
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc       620 Mar 14 09:46 runtime_log
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc   2406400 Mar 14 09:46 result.tar.gz
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc      9205 Mar 14 09:46 runtime_log.err
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc       666 Mar 14 09:46 Z9jKDmoEeK9n9Rq4apOajLDm4fhM0noT9bVooX4SDm3zhLDmsFArbn.diag
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc        27 Mar 14 09:46 wrapper_checkpoint.txt
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc      8192 Mar 14 09:46 boinc_mmap_file
[2026-03-14 09:46:38] -rw-r--r--. 1 boinc boinc     21141 Mar 14 09:46 stderr.txt
[2026-03-14 09:46:38] HITS file was successfully produced:
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc 202586803 Mar 14 09:44 shared/HITS.pool.root.1
[2026-03-14 09:46:38]  *** Contents of shared directory: ***
[2026-03-14 09:46:38] total 416440
[2026-03-14 09:46:38] -rw-r--r--. 2 boinc boinc 220814590 Mar 14 05:49 ATLAS.root_0
[2026-03-14 09:46:38] -rw-r--r--. 2 boinc boinc     15845 Mar 14 05:49 start_atlas.sh
[2026-03-14 09:46:38] -rw-r--r--. 2 boinc boinc    597535 Mar 14 05:49 input.tar.gz
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc 202586803 Mar 14 09:44 HITS.pool.root.1
[2026-03-14 09:46:38] -rw-------. 1 boinc boinc   2406400 Mar 14 09:46 result.tar.gz
09:46:40 (801853): run_atlas exited; CPU time 53385.816833
09:46:40 (801853): called boinc_finish(0)

</stderr_txt>
]]>

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