Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:55:49 (1344771): wrapper (7.7.26015): starting
15:55:49 (1344771): wrapper: running run_atlas (--nthreads 3)
[2026-03-12 15:55:49] Arguments: --nthreads 3
[2026-03-12 15:55:49] Threads: 3
[2026-03-12 15:55:49] Checking for CVMFS
[2026-03-12 15:55:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 15:55:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 15:55:49] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 15:55:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 15:55:49] 2.9.2.0 4801 8983 84572 157203 1 50 27219044 36864001 0 130560 0 3760897 99.984 335845 7865 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 15:55:49] CVMFS is ok
[2026-03-12 15:55:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 15:55:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 15:55:49] Further information can be found at the LHC@home message board.
[2026-03-12 15:55:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 15:55:49] Checking for apptainer binary...
[2026-03-12 15:55:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 15:55:49] Running /usr/bin/apptainer --version
[2026-03-12 15:55:49] apptainer version 1.4.1-1.1
[2026-03-12 15:55:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 15:55:49] cosA125a
[2026-03-12 15:55:49] apptainer works
[2026-03-12 15:55:49] Set ATHENA_PROC_NUMBER=3
[2026-03-12 15:55:49] Set ATHENA_CORE_NUMBER=3
[2026-03-12 15:55:49] Starting ATLAS job with PandaID=7036747805
[2026-03-12 15:55:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 17:37:21]  *** The last 200 lines of the pilot log: ***
[2026-03-12 17:37:21] 2026-03-12 16:36:50,351 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 17:37:21] 2026-03-12 16:36:50,351 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 17:37:21] 2026-03-12 16:36:50,351 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 17:37:21] 2026-03-12 16:36:50,351 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 17:37:21] 2026-03-12 16:36:50,351 | INFO     | job 7036747805 has completed (purged errors)
[2026-03-12 17:37:21] 2026-03-12 16:36:50,351 | INFO     | overall cleanup function is called
[2026-03-12 17:37:21] 2026-03-12 16:36:50,451 | WARNING  | process 1353243 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 17:37:21] 2026-03-12 16:36:50,484 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 17:37:21] 2026-03-12 16:36:50,524 | INFO     | number of running child processes to parent process 1353243: 1
[2026-03-12 17:37:21] 2026-03-12 16:36:50,524 | INFO     | maximum number of monitored processes: 6
[2026-03-12 17:37:21] 2026-03-12 16:36:50,524 | INFO     | aborting job monitoring since job object (job id=7036747805) has expired
[2026-03-12 17:37:21] 2026-03-12 16:36:51,358 | INFO     | --- collectZombieJob: --- 10, [1353243]
[2026-03-12 17:37:21] 2026-03-12 16:36:51,358 | INFO     | zombie collector waiting for pid 1353243
[2026-03-12 17:37:21] 2026-03-12 16:36:51,358 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 17:37:21] 2026-03-12 16:36:51,358 | INFO     | collected zombie processes
[2026-03-12 17:37:21] 2026-03-12 16:36:51,358 | INFO     | will attempt to kill all subprocesses of pid=1353243
[2026-03-12 17:37:21] 2026-03-12 16:36:51,403 | INFO     | process IDs to be killed: [1353243] (in reverse order)
[2026-03-12 17:37:21] 2026-03-12 16:36:51,428 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 17:37:21] 2026-03-12 16:36:51,428 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 17:37:21] 2026-03-12 16:36:51,429 | INFO     | did not find any defunct processes belonging to 1353243
[2026-03-12 17:37:21] 2026-03-12 16:36:51,430 | INFO     | did not find any defunct processes belonging to 1353243
[2026-03-12 17:37:21] 2026-03-12 16:36:51,431 | INFO     | ready for new job
[2026-03-12 17:37:21] 2026-03-12 16:36:51,431 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 17:37:21] 2026-03-12 16:36:51,431 | INFO     | **************************************
[2026-03-12 17:37:21] 2026-03-12 16:36:51,431 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 17:37:21] 2026-03-12 16:36:51,431 | INFO     | **************************************
[2026-03-12 17:37:21] 2026-03-12 16:36:51,431 | INFO     | 
[2026-03-12 17:37:21] 2026-03-12 16:36:51,432 | INFO     | architecture information:
[2026-03-12 17:37:21] 2026-03-12 16:36:51,432 | INFO     | executing command: cat /etc/os-release
[2026-03-12 17:37:21] 2026-03-12 16:36:51,440 | INFO     | cat /etc/os-release:
[2026-03-12 17:37:21] NAME="CentOS Linux"
[2026-03-12 17:37:21] VERSION="7 (Core)"
[2026-03-12 17:37:21] ID="centos"
[2026-03-12 17:37:21] ID_LIKE="rhel fedora"
[2026-03-12 17:37:21] VERSION_ID="7"
[2026-03-12 17:37:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 17:37:21] ANSI_COLOR="0;31"
[2026-03-12 17:37:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 17:37:21] HOME_URL="https://www.centos.org/"
[2026-03-12 17:37:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 17:37:21] 
[2026-03-12 17:37:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 17:37:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 17:37:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 17:37:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 17:37:21] 
[2026-03-12 17:37:21] 2026-03-12 16:36:51,440 | INFO     | **************************************
[2026-03-12 17:37:21] 2026-03-12 16:36:51,943 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 17:37:21] 2026-03-12 16:36:51,957 | INFO     | sufficient remaining disk space (332041027584 B)
[2026-03-12 17:37:21] 2026-03-12 16:36:51,957 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 17:37:21] 2026-03-12 16:36:51,958 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 17:37:21] 2026-03-12 16:36:51,958 | INFO     | update_server=False
[2026-03-12 17:37:21] 2026-03-12 16:36:51,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 17:37:21] 2026-03-12 16:36:51,958 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 17:37:21] 2026-03-12 16:36:51,958 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 17:37:21] 2026-03-12 16:36:51,958 | INFO     | aborting loop
[2026-03-12 17:37:21] 2026-03-12 16:36:52,777 | INFO     | all job control threads have been joined
[2026-03-12 17:37:21] 2026-03-12 16:36:52,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 17:37:21] 2026-03-12 16:36:52,963 | INFO     | [job] retrieve thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:52,964 | INFO     | [job] job monitor thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:52,976 | INFO     | all data control threads have been joined
[2026-03-12 17:37:21] 2026-03-12 16:36:53,014 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:53,135 | INFO     | [payload] failed_post thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:53,151 | INFO     | [data] copytool_in thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:53,162 | INFO     | all payload control threads have been joined
[2026-03-12 17:37:21] 2026-03-12 16:36:53,502 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:53,541 | INFO     | job.realtimelogging is not enabled
[2026-03-12 17:37:21] 2026-03-12 16:36:53,731 | INFO     | [payload] validate_post thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:53,783 | INFO     | [job] control thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:53,982 | INFO     | [data] control thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:54,167 | INFO     | [payload] control thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:54,376 | INFO     | [job] validate thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:54,417 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:54,547 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:54,822 | INFO     | [data] copytool_out thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:54,881 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 17:37:21] 2026-03-12 16:36:55,887 | INFO     | [job] queue monitor thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:36:55,964 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 17:37:21] 2026-03-12 16:37:05,958 | INFO     | [monitor] cgroup control has ended
[2026-03-12 17:37:21] 2026-03-12 16:37:06,236 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139846034388800)>', '<ExcThread(monitor, started 139845385045760)>']
[2026-03-12 17:37:21] 2026-03-12 16:37:11,248 | INFO     | all workflow threads have been joined
[2026-03-12 17:37:21] 2026-03-12 16:37:11,249 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 17:37:21] 2026-03-12 16:37:11,250 | INFO     | traces error code: 0
[2026-03-12 17:37:21] 2026-03-12 16:37:11,250 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 17:37:21] 2026-03-12 16:37:21,804 | INFO     | PID=1348813 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 17:37:21] 2026-03-12 16:37:21,804 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 17:37:21] 2026-03-12 16:37:21,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 17:37:21] 2026-03-12 16:37:21,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 17:37:21] 2026-03-12 16:37:21,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 17:37:21] 2026-03-12 16:37:21,805 | INFO     | [monitor] control thread has ended
[2026-03-12 17:37:21] 2026-03-12 16:37:21,849 [wrapper] ==== pilot stdout END ====
[2026-03-12 17:37:21] 2026-03-12 16:37:21,852 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 17:37:21] 2026-03-12 16:37:21,854 [wrapper] pilotpid: 1348813
[2026-03-12 17:37:21] 2026-03-12 16:37:21,856 [wrapper] Pilot exit status: 0
[2026-03-12 17:37:21] 2026-03-12 16:37:21,864 [wrapper] pandaids: 7036747805
[2026-03-12 17:37:21] 2026-03-12 16:37:21,880 [wrapper] cleanup supervisor_pilot 1358766 1348814
[2026-03-12 17:37:21] 2026-03-12 16:37:21,882 [wrapper] Test setup, not cleaning
[2026-03-12 17:37:21] 2026-03-12 16:37:21,885 [wrapper] apfmon messages muted
[2026-03-12 17:37:21] 2026-03-12 16:37:21,887 [wrapper] ==== wrapper stdout END ====
[2026-03-12 17:37:21] 2026-03-12 16:37:21,889 [wrapper] ==== wrapper stderr END ====
[2026-03-12 17:37:21]  *** Error codes and diagnostics ***
[2026-03-12 17:37:21]     "exeErrorCode": 0,
[2026-03-12 17:37:21]     "exeErrorDiag": "",
[2026-03-12 17:37:21]     "pilotErrorCode": 0,
[2026-03-12 17:37:21]     "pilotErrorDiag": "",
[2026-03-12 17:37:21]  *** Listing of results directory ***
[2026-03-12 17:37:21] total 448924
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc    584627 Mar  3 22:23 pilot3.tar.gz
[2026-03-12 17:37:21] -rwx------ 1 boinc boinc     36322 Mar  3 23:07 runpilot2-wrapper.sh
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc      5111 Mar  3 23:08 queuedata.json
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc       100 Mar 12 15:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 17:37:21] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 15:55 run_atlas
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc       105 Mar 12 15:55 job.xml
[2026-03-12 17:37:21] -rw-r--r-- 2 boinc boinc 256651477 Mar 12 15:55 EVNT.48458747._000002.pool.root.1
[2026-03-12 17:37:21] -rw-r--r-- 2 boinc boinc    597961 Mar 12 15:55 input.tar.gz
[2026-03-12 17:37:21] -rw-r--r-- 2 boinc boinc     15845 Mar 12 15:55 start_atlas.sh
[2026-03-12 17:37:21] drwxrwx--x 2 boinc boinc      4096 Mar 12 15:55 shared
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc         0 Mar 12 15:55 boinc_setup_complete
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc      6441 Mar 12 15:55 init_data.xml
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc         0 Mar 12 15:55 boinc_lockfile
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc      2607 Mar 12 15:55 pandaJob.out
[2026-03-12 17:37:21] -rw------- 1 boinc boinc   1006554 Mar 12 15:55 agis_schedconf.cvmfs.json
[2026-03-12 17:37:21] -rw------- 1 boinc boinc   1511578 Mar 12 15:55 agis_ddmendpoints.agis.ALL.json
[2026-03-12 17:37:21] -rw------- 1 boinc boinc       428 Mar 12 15:55 workernode_map.json
[2026-03-12 17:37:21] drwx------ 5 boinc boinc      4096 Mar 12 15:55 pilot3
[2026-03-12 17:37:21] -rw------- 1 boinc boinc        95 Mar 12 17:36 pilot_heartbeat.json
[2026-03-12 17:37:21] -rw------- 1 boinc boinc 196841765 Mar 12 17:36 HITS.48850364._000036.pool.root.1
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc       530 Mar 12 17:36 boinc_task_state.xml
[2026-03-12 17:37:21] -rw------- 1 boinc boinc      1022 Mar 12 17:36 memory_monitor_summary.json
[2026-03-12 17:37:21] -rw------- 1 boinc boinc    265943 Mar 12 17:36 log.48850364._000036.job.log.tgz.1
[2026-03-12 17:37:21] -rw------- 1 boinc boinc      6306 Mar 12 17:36 heartbeat.json
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc      8192 Mar 12 17:37 boinc_mmap_file
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc        27 Mar 12 17:37 wrapper_checkpoint.txt
[2026-03-12 17:37:21] -rw------- 1 boinc boinc       747 Mar 12 17:37 pilotlog.txt
[2026-03-12 17:37:21] -rw------- 1 boinc boinc    875746 Mar 12 17:37 log.48850364._000036.job.log.1
[2026-03-12 17:37:21] -rw------- 1 boinc boinc       357 Mar 12 17:37 output.list
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc       620 Mar 12 17:37 runtime_log
[2026-03-12 17:37:21] -rw------- 1 boinc boinc   1157120 Mar 12 17:37 result.tar.gz
[2026-03-12 17:37:21] -rw------- 1 boinc boinc       659 Mar 12 17:37 xPQLDmh4mH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmA1HLDmpqj1Dm.diag
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc      8906 Mar 12 17:37 runtime_log.err
[2026-03-12 17:37:21] -rw-r--r-- 1 boinc boinc     11934 Mar 12 17:37 stderr.txt
[2026-03-12 17:37:21] HITS file was successfully produced:
[2026-03-12 17:37:21] -rw------- 1 boinc boinc 196841765 Mar 12 17:36 shared/HITS.pool.root.1
[2026-03-12 17:37:21]  *** Contents of shared directory: ***
[2026-03-12 17:37:21] total 444612
[2026-03-12 17:37:21] -rw-r--r-- 2 boinc boinc 256651477 Mar 12 15:55 ATLAS.root_0
[2026-03-12 17:37:21] -rw-r--r-- 2 boinc boinc    597961 Mar 12 15:55 input.tar.gz
[2026-03-12 17:37:21] -rw-r--r-- 2 boinc boinc     15845 Mar 12 15:55 start_atlas.sh
[2026-03-12 17:37:21] -rw------- 1 boinc boinc 196841765 Mar 12 17:36 HITS.pool.root.1
[2026-03-12 17:37:21] -rw------- 1 boinc boinc   1157120 Mar 12 17:37 result.tar.gz
17:37:23 (1344771): run_atlas exited; CPU time 17441.304900
17:37:23 (1344771): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN