Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:01 (111321): wrapper (7.7.26015): starting
00:04:01 (111321): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 00:04:01] Arguments: --nthreads 8
[2026-03-12 00:04:01] Threads: 8
[2026-03-12 00:04:01] Checking for CVMFS
[2026-03-12 00:04:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 00:04:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 00:04:04] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 00:04:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 00:04:09] 2.13.3.0 8593 108528 414100 157181 1 67 19719967 39288832 23858 16776704 0 260022603 99.590 316583036 30449 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-12 00:04:09] CVMFS is ok
[2026-03-12 00:04:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 00:04:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 00:04:09] Further information can be found at the LHC@home message board.
[2026-03-12 00:04:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 00:04:09] Checking for apptainer binary...
[2026-03-12 00:04:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 00:04:09] Running /usr/bin/apptainer --version
[2026-03-12 00:04:09] apptainer version 1.4.5-2.el9
[2026-03-12 00:04:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 00:04:10] c-211-25.aglt2.org
[2026-03-12 00:04:10] apptainer works
[2026-03-12 00:04:10] Set ATHENA_PROC_NUMBER=8
[2026-03-12 00:04:10] Set ATHENA_CORE_NUMBER=8
[2026-03-12 00:04:11] Starting ATLAS job with PandaID=7050417645
[2026-03-12 00:04:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 00:04:18]  *** The last 200 lines of the pilot log: ***
[2026-03-14 00:04:18] 2026-03-13 05:48:15,510 | INFO     | mean x: 1773334726.7195768
[2026-03-14 00:04:18] 2026-03-13 05:48:15,510 | INFO     | mean y: 2496266.255952381
[2026-03-14 00:04:18] 2026-03-13 05:48:15,510 | INFO     | intersect: -2556467376.677308
[2026-03-14 00:04:18] 2026-03-13 05:48:15,516 | INFO     | chi2: 9.640856989196289
[2026-03-14 00:04:18] 2026-03-13 05:48:15,518 | INFO     | sum of square deviations: 1061198173273.9751
[2026-03-14 00:04:18] 2026-03-13 05:48:16,971 | INFO     | time since job start (92421s) is within the limit (345600.0s)
[2026-03-14 00:04:18] 2026-03-13 05:48:17,038 | INFO     | sum of deviations: 1926132319809.0073
[2026-03-14 00:04:18] 2026-03-13 05:48:17,038 | INFO     | mean x: 1773334574.2216325
[2026-03-14 00:04:18] 2026-03-13 05:48:17,038 | INFO     | mean y: 2501723.386197744
[2026-03-14 00:04:18] 2026-03-13 05:48:17,038 | INFO     | intersect: -3216196841.3739476
[2026-03-14 00:04:18] 2026-03-13 05:48:17,106 | INFO     | chi2: 6.8632456741655785
[2026-03-14 00:04:18] 2026-03-13 05:48:17,106 | INFO     | current chi2=6.8632456741655785 (change=28.8108341213167 %)
[2026-03-14 00:04:18] 2026-03-13 05:48:17,108 | INFO     | sum of square deviations: 1050670344459.8883
[2026-03-14 00:04:18] 2026-03-13 05:48:17,790 | INFO     | monitor loop #3693: job 0:7050417645 is in state 'finished'
[2026-03-14 00:04:18] 2026-03-13 05:48:17,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-14 00:04:18] 2026-03-13 05:48:17,907 | INFO     | sum of deviations: 1920715753748.4055
[2026-03-14 00:04:18] 2026-03-13 05:48:17,907 | INFO     | mean x: 1773334421.7243676
[2026-03-14 00:04:18] 2026-03-13 05:48:17,907 | INFO     | mean y: 2501644.9260985353
[2026-03-14 00:04:18] 2026-03-13 05:48:17,908 | INFO     | intersect: -3239306195.5923753
[2026-03-14 00:04:18] 2026-03-13 05:48:17,914 | INFO     | chi2: 6.862388730529548
[2026-03-14 00:04:18] 2026-03-13 05:48:17,915 | INFO     | current chi2=6.862388730529548 (change=0.012485982240969097 %)
[2026-03-14 00:04:18] 2026-03-13 05:48:17,915 | INFO     | right removable region: 1501
[2026-03-14 00:04:18] 2026-03-13 05:48:17,917 | INFO     | sum of square deviations: 1061197324399.6393
[2026-03-14 00:04:18] 2026-03-13 05:48:18,132 | INFO     | sum of deviations: 1054820758586.9763
[2026-03-14 00:04:18] 2026-03-13 05:48:18,133 | INFO     | mean x: 1773334879.223623
[2026-03-14 00:04:18] 2026-03-13 05:48:18,133 | INFO     | mean y: 2503341.01194426
[2026-03-14 00:04:18] 2026-03-13 05:48:18,133 | INFO     | intersect: -1760175851.1822588
[2026-03-14 00:04:18] 2026-03-13 05:48:18,139 | INFO     | chi2: 5.877835397927469
[2026-03-14 00:04:18] 2026-03-13 05:48:18,140 | INFO     | current chi2=5.877835397927469 (change=39.03202376599639 %)
[2026-03-14 00:04:18] 2026-03-13 05:48:18,146 | INFO     | sum of square deviations: 1050668831414.9878
[2026-03-14 00:04:18] 2026-03-13 05:48:18,332 | INFO     | sum of deviations: 706534710840.3187
[2026-03-14 00:04:18] 2026-03-13 05:48:18,338 | INFO     | mean x: 1773335031.7256992
[2026-03-14 00:04:18] 2026-03-13 05:48:18,338 | INFO     | mean y: 2508385.17310253
[2026-03-14 00:04:18] 2026-03-13 05:48:18,339 | INFO     | intersect: -1189991778.9137592
[2026-03-14 00:04:18] 2026-03-13 05:48:18,458 | INFO     | chi2: 4.060950429093543
[2026-03-14 00:04:18] 2026-03-13 05:48:18,481 | INFO     | current chi2=4.060950429093543 (change=30.910783406329507 %)
[2026-03-14 00:04:18] 2026-03-13 05:48:18,506 | INFO     | sum of square deviations: 1040210566091.137
[2026-03-14 00:04:18] 2026-03-13 05:48:19,066 | INFO     | time since job start (92424s) is within the limit (345600.0s)
[2026-03-14 00:04:18] 2026-03-13 05:48:19,777 | INFO     | sum of deviations: 489625767417.47455
[2026-03-14 00:04:18] 2026-03-13 05:48:19,777 | INFO     | mean x: 1773335184.225117
[2026-03-14 00:04:18] 2026-03-13 05:48:19,777 | INFO     | mean y: 2511546.86506346
[2026-03-14 00:04:18] 2026-03-13 05:48:19,778 | INFO     | intersect: -832195029.6383702
[2026-03-14 00:04:18] 2026-03-13 05:48:19,779 | INFO     | chi2: 3.326172045317417
[2026-03-14 00:04:18] 2026-03-13 05:48:19,781 | INFO     | current chi2=3.326172045317417 (change=18.093754075696463 %)
[2026-03-14 00:04:18] 2026-03-13 05:48:19,781 | INFO     | left removable region: 30
[2026-03-14 00:04:18] 2026-03-13 05:48:19,783 | INFO     | sum of square deviations: 986944357971.4142
[2026-03-14 00:04:18] 2026-03-13 05:48:19,865 | INFO     | sum of deviations: 589471304007.4075
[2026-03-14 00:04:18] 2026-03-13 05:48:19,866 | INFO     | mean x: 1773335306.2311354
[2026-03-14 00:04:18] 2026-03-13 05:48:19,866 | INFO     | mean y: 2521224.672331747
[2026-03-14 00:04:18] 2026-03-13 05:48:19,866 | INFO     | intersect: -1056637041.9142833
[2026-03-14 00:04:18] 2026-03-13 05:48:19,868 | INFO     | chi2: 0.09582141281140515
[2026-03-14 00:04:18] 2026-03-13 05:48:19,868 | INFO     | current memory leak: 0.60 B/s (using 1471 data points, chi2=0.10)
[2026-03-14 00:04:18] 2026-03-13 05:48:19,870 | INFO     | could have reported an average CPU frequency of 2900 MHz (54 samples)
[2026-03-14 00:04:18] 2026-03-13 05:48:19,870 | INFO     | ..............................
[2026-03-14 00:04:18] 2026-03-13 05:48:19,870 | INFO     | . Timing measurements:
[2026-03-14 00:04:18] 2026-03-13 05:48:19,870 | INFO     | . get job = 3 s
[2026-03-14 00:04:18] 2026-03-13 05:48:19,870 | INFO     | . initial setup = 85 s
[2026-03-14 00:04:18] 2026-03-13 05:48:19,871 | INFO     | . payload setup = 87 s
[2026-03-14 00:04:18] 2026-03-13 05:48:19,871 | INFO     | . stage-in = 3 s
[2026-03-14 00:04:18] 2026-03-13 05:48:19,871 | INFO     | . payload execution = 92260 s
[2026-03-14 00:04:18] 2026-03-13 05:48:19,871 | INFO     | . stage-out = 22 s
[2026-03-14 00:04:18] 2026-03-13 05:48:19,871 | INFO     | . log creation = 5 s
[2026-03-14 00:04:18] 2026-03-13 05:48:19,871 | INFO     | ..............................
[2026-03-14 00:04:18] 2026-03-13 05:48:20,057 | INFO     | 
[2026-03-14 00:04:18] 2026-03-13 05:48:20,058 | INFO     | job summary report
[2026-03-14 00:04:18] 2026-03-13 05:48:20,058 | INFO     | --------------------------------------------------
[2026-03-14 00:04:18] 2026-03-13 05:48:20,058 | INFO     | PanDA job id: 7050417645
[2026-03-14 00:04:18] 2026-03-13 05:48:20,058 | INFO     | task id: 48967085
[2026-03-14 00:04:18] 2026-03-13 05:48:20,058 | INFO     | errors: (none)
[2026-03-14 00:04:18] 2026-03-13 05:48:20,058 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 00:04:18] 2026-03-13 05:48:20,059 | INFO     | pilot state: finished 
[2026-03-14 00:04:18] 2026-03-13 05:48:20,059 | INFO     | transexitcode: 0
[2026-03-14 00:04:18] 2026-03-13 05:48:20,059 | INFO     | exeerrorcode: 0
[2026-03-14 00:04:18] 2026-03-13 05:48:20,059 | INFO     | exeerrordiag: 
[2026-03-14 00:04:18] 2026-03-13 05:48:20,059 | INFO     | exitcode: 0
[2026-03-14 00:04:18] 2026-03-13 05:48:20,059 | INFO     | exitmsg: OK
[2026-03-14 00:04:18] 2026-03-13 05:48:20,060 | INFO     | cpuconsumptiontime: 91592 s
[2026-03-14 00:04:18] 2026-03-13 05:48:20,061 | INFO     | nevents: 400
[2026-03-14 00:04:18] 2026-03-13 05:48:20,061 | INFO     | neventsw: 0
[2026-03-14 00:04:18] 2026-03-13 05:48:20,061 | INFO     | pid: 134849
[2026-03-14 00:04:18] 2026-03-13 05:48:20,061 | INFO     | pgrp: 134849
[2026-03-14 00:04:18] 2026-03-13 05:48:20,062 | INFO     | corecount: 8
[2026-03-14 00:04:18] 2026-03-13 05:48:20,062 | INFO     | event service: False
[2026-03-14 00:04:18] 2026-03-13 05:48:20,062 | INFO     | sizes: {0: 2279152, 2: 2279753, 3: 2279837, 6: 2279865, 7: 2279865, 9: 2280266, 13: 2280266, 14: 2280538, 26: 2280538, 92356: 2343167, 92359: 2343166, 92382: 23525
[2026-03-14 00:04:18] 2026-03-13 05:48:20,062 | INFO     | --------------------------------------------------
[2026-03-14 00:04:18] 2026-03-13 05:48:20,062 | INFO     | 
[2026-03-14 00:04:18] 2026-03-13 05:48:20,063 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-03-14 00:04:18] 2026-03-13 05:48:20,171 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,172 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,172 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,172 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,174 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,174 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 00:04:18] 2026-03-13 05:48:20,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,175 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 00:04:18] 2026-03-13 05:48:20,324 | INFO     | job 7050417645 has completed (purged errors)
[2026-03-14 00:04:18] 2026-03-13 05:48:20,324 | INFO     | overall cleanup function is called
[2026-03-14 00:04:18] 2026-03-13 05:48:21,350 | INFO     | --- collectZombieJob: --- 10, [134849]
[2026-03-14 00:04:18] 2026-03-13 05:48:21,350 | INFO     | zombie collector waiting for pid 134849
[2026-03-14 00:04:18] 2026-03-13 05:48:21,350 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 00:04:18] 2026-03-13 05:48:21,351 | INFO     | collected zombie processes
[2026-03-14 00:04:18] 2026-03-13 05:48:21,351 | INFO     | will attempt to kill all subprocesses of pid=134849
[2026-03-14 00:04:18] 2026-03-13 05:48:23,239 | INFO     | PID=121029 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 00:04:18] 2026-03-13 05:48:23,243 | INFO     | .. there are 39 such processes running
[2026-03-14 00:04:18] 2026-03-13 05:48:24,043 | INFO     | process IDs to be killed: [134849] (in reverse order)
[2026-03-14 00:04:18] 2026-03-13 05:48:27,549 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 00:04:18] 2026-03-13 05:48:27,549 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 00:04:18] 2026-03-13 05:48:27,619 | INFO     | did not find any defunct processes belonging to 134849
[2026-03-14 00:04:18] 2026-03-13 05:48:27,688 | INFO     | did not find any defunct processes belonging to 134849
[2026-03-14 00:04:18] 2026-03-13 05:48:27,688 | INFO     | ready for new job
[2026-03-14 00:04:18] 2026-03-13 05:48:27,688 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 00:04:18] 2026-03-13 05:48:27,698 | INFO     | **************************************
[2026-03-14 00:04:18] 2026-03-13 05:48:27,707 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 00:04:18] 2026-03-13 05:48:27,707 | INFO     | **************************************
[2026-03-14 00:04:18] 2026-03-13 05:48:27,707 | INFO     | 
[2026-03-14 00:04:18] 2026-03-13 05:48:27,709 | INFO     | architecture information:
[2026-03-14 00:04:18] 2026-03-13 05:48:27,713 | INFO     | executing command: cat /etc/os-release
[2026-03-14 00:04:18] 2026-03-13 05:48:27,913 | INFO     | cat /etc/os-release:
[2026-03-14 00:04:18] NAME="CentOS Linux"
[2026-03-14 00:04:18] VERSION="7 (Core)"
[2026-03-14 00:04:18] ID="centos"
[2026-03-14 00:04:18] ID_LIKE="rhel fedora"
[2026-03-14 00:04:18] VERSION_ID="7"
[2026-03-14 00:04:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 00:04:18] ANSI_COLOR="0;31"
[2026-03-14 00:04:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 00:04:18] HOME_URL="https://www.centos.org/"
[2026-03-14 00:04:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 00:04:18] 
[2026-03-14 00:04:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 00:04:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 00:04:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 00:04:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 00:04:18] 
[2026-03-14 00:04:18] 2026-03-13 05:48:27,914 | INFO     | **************************************
[2026-03-14 00:04:18] 2026-03-13 05:48:28,419 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-03-14 00:04:18] 2026-03-13 05:48:28,796 | INFO     | sufficient remaining disk space (50597986304 B)
[2026-03-14 00:04:18] 2026-03-13 05:48:28,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 00:04:18] 2026-03-13 05:48:28,801 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 00:04:18] 2026-03-13 05:48:28,801 | INFO     | update_server=False
[2026-03-14 00:04:18] 2026-03-13 05:48:28,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 00:04:18] 2026-03-13 05:48:29,082 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 00:04:18] 2026-03-13 05:48:29,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 00:04:18] 2026-03-13 05:48:29,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 00:04:18] 2026-03-13 05:48:29,317 | INFO     | aborting loop
[2026-03-14 00:04:18] 2026-03-13 05:48:29,336 | INFO     | all data control threads have been joined
[2026-03-14 00:04:18] 2026-03-13 05:48:29,808 | INFO     | [job] retrieve thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:29,945 | INFO     | all payload control threads have been joined
[2026-03-14 00:04:18] 2026-03-13 05:48:30,105 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 00:04:18] 2026-03-13 05:48:30,116 | INFO     | [job] queue monitor thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:30,183 | INFO     | [payload] failed_post thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:30,265 | INFO     | all job control threads have been joined
[2026-03-14 00:04:18] 2026-03-13 05:48:30,329 | INFO     | [job] job monitor thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:30,342 | INFO     | [data] control thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:30,413 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:30,425 | INFO     | [data] copytool_in thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:30,595 | INFO     | [job] validate thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:30,702 | INFO     | [payload] validate_post thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:30,828 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:30,862 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:30,984 | INFO     | [payload] control thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:31,148 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:31,271 | INFO     | [job] control thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:32,111 | INFO     | [data] copytool_out thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:48:33,091 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 00:04:18] 2026-03-13 05:49:03,127 | INFO     | PID=121029 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 00:04:18] 2026-03-13 05:49:03,127 | INFO     | .. there are 39 such processes running
[2026-03-14 00:04:18] 2026-03-13 05:49:03,136 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 00:04:18] 2026-03-13 05:49:03,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 00:04:18] 2026-03-13 05:49:03,136 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 00:04:18] 2026-03-13 05:49:16,805 | INFO     | [monitor] cgroup control has ended
[2026-03-14 00:04:18] 2026-03-13 05:49:17,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140252066412352)>', '<ExcThread(monitor, started 140251712431872)>']
[2026-03-14 00:04:18] 2026-03-13 05:49:18,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 00:04:18] 2026-03-13 05:49:18,322 | INFO     | [monitor] control thread has ended
[2026-03-14 00:04:18] 2026-03-13 05:49:22,541 | INFO     | all workflow threads have been joined
[2026-03-14 00:04:18] 2026-03-13 05:49:22,541 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 00:04:18] 2026-03-13 05:49:22,541 | INFO     | traces error code: 0
[2026-03-14 00:04:18] 2026-03-13 05:49:22,542 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 00:04:18] 2026-03-13 05:49:23,132 [wrapper] ==== pilot stdout END ====
[2026-03-14 00:04:18] 2026-03-13 05:49:23,154 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 00:04:18] 2026-03-13 05:49:23,210 [wrapper] pilotpid: 121029
[2026-03-14 00:04:18] 2026-03-13 05:49:23,365 [wrapper] Pilot exit status: 0
[2026-03-14 00:04:18] 2026-03-13 05:49:23,743 [wrapper] pandaids: 7050417645
[2026-03-14 00:04:18] 2026-03-13 05:49:24,039 [wrapper] cleanup supervisor_pilot 3978733 121030
[2026-03-14 00:04:18] 2026-03-13 05:49:24,096 [wrapper] Test setup, not cleaning
[2026-03-14 00:04:18] 2026-03-13 05:49:24,224 [wrapper] apfmon messages muted
[2026-03-14 00:04:18] 2026-03-13 05:49:24,273 [wrapper] ==== wrapper stdout END ====
[2026-03-14 00:04:18] 2026-03-13 05:49:24,329 [wrapper] ==== wrapper stderr END ====
[2026-03-14 00:04:18]  *** Error codes and diagnostics ***
[2026-03-14 00:04:18]     "exeErrorCode": 0,
[2026-03-14 00:04:18]     "exeErrorDiag": "",
[2026-03-14 00:04:18]     "pilotErrorCode": 0,
[2026-03-14 00:04:18]     "pilotErrorDiag": "",
[2026-03-14 00:04:18]  *** Listing of results directory ***
[2026-03-14 00:04:18] total 422456
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas    585013 Mar 11 19:24 pilot3.tar.gz
[2026-03-14 00:04:18] -rwx------. 1 boincer umatlas     36322 Mar 11 19:28 runpilot2-wrapper.sh
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas      5111 Mar 11 19:29 queuedata.json
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas       100 Mar 12 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 00:04:18] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 12 00:04 run_atlas
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas       105 Mar 12 00:04 job.xml
[2026-03-14 00:04:18] -rw-r--r--. 2 boincer umatlas 212664348 Mar 12 00:04 EVNT.48967083._000488.pool.root.1
[2026-03-14 00:04:18] -rw-r--r--. 2 boincer umatlas     15845 Mar 12 00:04 start_atlas.sh
[2026-03-14 00:04:18] drwxrwx--x. 2 boincer umatlas      4096 Mar 12 00:04 shared
[2026-03-14 00:04:18] -rw-r--r--. 2 boincer umatlas    597525 Mar 12 00:04 input.tar.gz
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas         0 Mar 12 00:04 boinc_lockfile
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas      2563 Mar 12 00:04 pandaJob.out
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas        57 Mar 12 00:04 setup.sh.local
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas       442 Mar 12 00:07 workernode_map.json
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas   1006227 Mar 12 00:07 agis_schedconf.cvmfs.json
[2026-03-14 00:04:18] drwx------. 5 boincer umatlas      4096 Mar 12 00:07 pilot3
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas 195664644 Mar 13 01:42 HITS.48967085._012416.pool.root.1
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas       531 Mar 13 01:43 boinc_task_state.xml
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas      1045 Mar 13 01:47 memory_monitor_summary.json
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas   1511578 Mar 13 01:47 agis_ddmendpoints.agis.ALL.json
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas   1267299 Mar 13 01:47 log.48967085._012416.job.log.tgz.1
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas      6399 Mar 13 01:48 heartbeat.json
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas        95 Mar 13 01:49 pilot_heartbeat.json
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas      4819 Mar 13 01:49 pilotlog.txt
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas   8893210 Mar 13 01:49 log.48967085._012416.job.log.1
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas       357 Mar 13 01:49 output.list
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas       620 Mar 13 01:49 runtime_log
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas  10178560 Mar 13 01:49 result.tar.gz
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas       659 Mar 13 01:49 s9HODm79hK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmsaiLDmbREfjn.diag
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas      9342 Mar 13 01:49 runtime_log.err
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas        28 Mar 14 00:04 wrapper_checkpoint.txt
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas      6527 Mar 14 00:04 init_data.xml
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas      8192 Mar 14 00:04 boinc_mmap_file
[2026-03-14 00:04:18] -rw-r--r--. 1 boincer umatlas     21268 Mar 14 00:04 stderr.txt
[2026-03-14 00:04:18] HITS file was successfully produced:
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas 195664644 Mar 13 01:42 shared/HITS.pool.root.1
[2026-03-14 00:04:18]  *** Contents of shared directory: ***
[2026-03-14 00:04:18] total 409312
[2026-03-14 00:04:18] -rw-r--r--. 2 boincer umatlas 212664348 Mar 12 00:04 ATLAS.root_0
[2026-03-14 00:04:18] -rw-r--r--. 2 boincer umatlas     15845 Mar 12 00:04 start_atlas.sh
[2026-03-14 00:04:18] -rw-r--r--. 2 boincer umatlas    597525 Mar 12 00:04 input.tar.gz
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas 195664644 Mar 13 01:42 HITS.pool.root.1
[2026-03-14 00:04:18] -rw-------. 1 boincer umatlas  10178560 Mar 13 01:49 result.tar.gz
00:04:20 (111321): run_atlas exited; CPU time 96365.255223
00:04:20 (111321): called boinc_finish(0)

</stderr_txt>
]]>

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