Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:25:12 (2050129): wrapper (7.7.26015): starting
12:25:12 (2050129): wrapper: running run_atlas (--nthreads 2)
[2026-03-12 12:25:12] Arguments: --nthreads 2
[2026-03-12 12:25:12] Threads: 2
[2026-03-12 12:25:12] Checking for CVMFS
[2026-03-12 12:25:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 12:25:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 12:25:12] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 12:25:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 12:25:12] 2.9.2.0 838544 12264 61184 157195 2 50 27142844 36864000 0 130560 1 3515562 99.977 444509 7631 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 12:25:12] CVMFS is ok
[2026-03-12 12:25:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 12:25:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 12:25:12] Further information can be found at the LHC@home message board.
[2026-03-12 12:25:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 12:25:12] Checking for apptainer binary...
[2026-03-12 12:25:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 12:25:12] Running /usr/bin/apptainer --version
[2026-03-12 12:25:12] apptainer version 1.4.1-1.1
[2026-03-12 12:25:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 12:25:12] legendA165
[2026-03-12 12:25:12] apptainer works
[2026-03-12 12:25:12] Set ATHENA_PROC_NUMBER=2
[2026-03-12 12:25:12] Set ATHENA_CORE_NUMBER=2
[2026-03-12 12:25:12] Starting ATLAS job with PandaID=7050079080
[2026-03-12 12:25:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 12:28:39]  *** The last 200 lines of the pilot log: ***
[2026-03-12 12:28:39] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2026-03-12 12:28:39] setting graceful stop in 10 s since there is no point in continuing
[2026-03-12 12:28:39] 2026-03-12 11:28:18,264 | INFO     | monitor loop #54: job 0:7050079080 is in state 'failed'
[2026-03-12 12:28:39] 2026-03-12 11:28:18,264 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2026-03-12 12:28:39] 2026-03-12 11:28:18,278 | INFO     | time since job start (168s) is within the limit (345600.0s)
[2026-03-12 12:28:39] 2026-03-12 11:28:18,611 | WARNING  | thread 'queue_monitor' received an exception from bucket: source code string cannot contain null bytes
[2026-03-12 12:28:39] 2026-03-12 11:28:20,284 | INFO     | time since job start (170s) is within the limit (345600.0s)
[2026-03-12 12:28:39] 2026-03-12 11:28:20,769 | INFO     | monitor loop #55: job 0:7050079080 is in state 'failed'
[2026-03-12 12:28:39] 2026-03-12 11:28:20,769 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2026-03-12 12:28:39] 2026-03-12 11:28:22,291 | INFO     | time since job start (172s) is within the limit (345600.0s)
[2026-03-12 12:28:39] 2026-03-12 11:28:23,273 | INFO     | monitor loop #56: job 0:7050079080 is in state 'failed'
[2026-03-12 12:28:39] 2026-03-12 11:28:23,274 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2026-03-12 12:28:39] 2026-03-12 11:28:24,297 | INFO     | time since job start (174s) is within the limit (345600.0s)
[2026-03-12 12:28:39] 2026-03-12 11:28:25,778 | INFO     | monitor loop #57: job 0:7050079080 is in state 'failed'
[2026-03-12 12:28:39] 2026-03-12 11:28:25,779 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2026-03-12 12:28:39] 2026-03-12 11:28:26,304 | INFO     | time since job start (176s) is within the limit (345600.0s)
[2026-03-12 12:28:39] 2026-03-12 11:28:27,355 | INFO     | PID=2054165 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 12:28:39] 2026-03-12 11:28:27,671 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 12:28:39] 2026-03-12 11:28:27,671 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-12 12:28:39] 2026-03-12 11:28:27,672 | INFO     | aborting loop
[2026-03-12 12:28:39] 2026-03-12 11:28:27,673 | INFO     | found 1 job(s) in 20 queues
[2026-03-12 12:28:39] 2026-03-12 11:28:27,673 | INFO     | aborting job 7050079080
[2026-03-12 12:28:39] 2026-03-12 11:28:27,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 12:28:39] 2026-03-12 11:28:27,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 12:28:39] 2026-03-12 11:28:27,744 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 12:28:39] 2026-03-12 11:28:27,744 | INFO     | [monitor] control thread has ended
[2026-03-12 12:28:39] 2026-03-12 11:28:28,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 12:28:39] 2026-03-12 11:28:28,275 | INFO     | all job control threads have been joined
[2026-03-12 12:28:39] 2026-03-12 11:28:28,427 | INFO     | all payload control threads have been joined
[2026-03-12 12:28:39] 2026-03-12 11:28:28,487 | INFO     | all data control threads have been joined
[2026-03-12 12:28:39] 2026-03-12 11:28:28,678 | INFO     | [job] job monitor thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,068 | INFO     | [payload] failed_post thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,281 | INFO     | [job] control thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,374 | INFO     | [job] retrieve thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,392 | INFO     | [job] validate thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,433 | INFO     | [payload] control thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,438 | INFO     | [payload] validate_post thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,461 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,493 | INFO     | [data] control thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,519 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,582 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:29,620 | INFO     | [data] copytool_in thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:30,058 | INFO     | [data] copytool_out thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:30,095 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 12:28:39] 2026-03-12 11:28:30,615 | INFO     | [monitor] cgroup control has ended
[2026-03-12 12:28:39] 2026-03-12 11:28:31,199 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:32,204 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140240841033536)>', '<ExcThread(queue_monitoring, started 140239523796736)>']
[2026-03-12 12:28:39] 2026-03-12 11:28:34,097 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140240841033536)>', '<ExcThread(queue_monitoring, started 140239523796736)>']
[2026-03-12 12:28:39] 2026-03-12 11:28:34,097 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 12:28:39] 2026-03-12 11:28:34,215 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140240841033536)>'])
[2026-03-12 12:28:39] 2026-03-12 11:28:39,233 | INFO     | all workflow threads have been joined
[2026-03-12 12:28:39] 2026-03-12 11:28:39,233 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 12:28:39] 2026-03-12 11:28:39,234 | INFO     | traces error code: 0
[2026-03-12 12:28:39] 2026-03-12 11:28:39,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 12:28:39] 2026-03-12 11:28:39,275 [wrapper] ==== pilot stdout END ====
[2026-03-12 12:28:39] 2026-03-12 11:28:39,277 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 12:28:39] 2026-03-12 11:28:39,279 [wrapper] pilotpid: 2054165
[2026-03-12 12:28:39] 2026-03-12 11:28:39,281 [wrapper] Pilot exit status: 0
[2026-03-12 12:28:39] 2026-03-12 11:28:39,287 [wrapper] pandaids: 7050079080
[2026-03-12 12:28:39] 2026-03-12 11:28:39,301 [wrapper] cleanup supervisor_pilot 2054171 2054166
[2026-03-12 12:28:39] 2026-03-12 11:28:39,303 [wrapper] Test setup, not cleaning
[2026-03-12 12:28:39] 2026-03-12 11:28:39,305 [wrapper] apfmon messages muted
[2026-03-12 12:28:39] 2026-03-12 11:28:39,307 [wrapper] ==== wrapper stdout END ====
[2026-03-12 12:28:39] 2026-03-12 11:28:39,309 [wrapper] ==== wrapper stderr END ====
[2026-03-12 12:28:39]  *** Error codes and diagnostics ***
[2026-03-12 12:28:39]  *** Listing of results directory ***
[2026-03-12 12:28:39] total 217424
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc    585013 Mar 11 20:14 pilot3.tar.gz
[2026-03-12 12:28:39] -rwx------ 1 boinc boinc     36322 Mar 11 20:14 runpilot2-wrapper.sh
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc      5111 Mar 11 20:15 queuedata.json
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc       100 Mar 12 12:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 12:28:39] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 12:25 run_atlas
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc       105 Mar 12 12:25 job.xml
[2026-03-12 12:28:39] -rw-r--r-- 2 boinc boinc 218536866 Mar 12 12:25 EVNT.48967092._000172.pool.root.1
[2026-03-12 12:28:39] -rw-r--r-- 2 boinc boinc    597537 Mar 12 12:25 input.tar.gz
[2026-03-12 12:28:39] -rw-r--r-- 2 boinc boinc     15845 Mar 12 12:25 start_atlas.sh
[2026-03-12 12:28:39] drwxrwx--x 2 boinc boinc      4096 Mar 12 12:25 shared
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc         0 Mar 12 12:25 boinc_setup_complete
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc      6209 Mar 12 12:25 init_data.xml
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc         0 Mar 12 12:25 boinc_lockfile
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc      2597 Mar 12 12:25 pandaJob.out
[2026-03-12 12:28:39] -rw------- 1 boinc boinc   1006243 Mar 12 12:25 agis_schedconf.cvmfs.json
[2026-03-12 12:28:39] -rw------- 1 boinc boinc   1511578 Mar 12 12:25 agis_ddmendpoints.agis.ALL.json
[2026-03-12 12:28:39] -rw------- 1 boinc boinc       423 Mar 12 12:25 workernode_map.json
[2026-03-12 12:28:39] drwx------ 5 boinc boinc      4096 Mar 12 12:25 pilot3
[2026-03-12 12:28:39] -rw------- 1 boinc boinc       577 Mar 12 12:25 heartbeat.json
[2026-03-12 12:28:39] -rw------- 1 boinc boinc       964 Mar 12 12:26 memory_monitor_summary.json
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc       522 Mar 12 12:26 boinc_task_state.xml
[2026-03-12 12:28:39] -rw------- 1 boinc boinc     18453 Mar 12 12:26 log.48967094._003810.job.log.tgz.1
[2026-03-12 12:28:39] drwxrwx--- 2 boinc boinc      4096 Mar 12 12:26 PanDA_Pilot-7050079080
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc      8192 Mar 12 12:28 boinc_mmap_file
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc        22 Mar 12 12:28 wrapper_checkpoint.txt
[2026-03-12 12:28:39] -rw------- 1 boinc boinc        95 Mar 12 12:28 pilot_heartbeat.json
[2026-03-12 12:28:39] -rw------- 1 boinc boinc     61253 Mar 12 12:28 pilotlog.txt
[2026-03-12 12:28:39] -rw------- 1 boinc boinc     76796 Mar 12 12:28 log.48967094._003810.job.log.1
[2026-03-12 12:28:39] -rw------- 1 boinc boinc       188 Mar 12 12:28 output.list
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc       620 Mar 12 12:28 runtime_log
[2026-03-12 12:28:39] -rw------- 1 boinc boinc    102400 Mar 12 12:28 result.tar.gz
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc      8763 Mar 12 12:28 runtime_log.err
[2026-03-12 12:28:39] -rw------- 1 boinc boinc       651 Mar 12 12:28 iWeKDm5BeK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmhjkLDmVm05an.diag
[2026-03-12 12:28:39] -rw-r--r-- 1 boinc boinc      9316 Mar 12 12:28 stderr.txt
[2026-03-12 12:28:39] No HITS result produced
[2026-03-12 12:28:39]  *** Contents of shared directory: ***
[2026-03-12 12:28:39] total 214116
[2026-03-12 12:28:39] -rw-r--r-- 2 boinc boinc 218536866 Mar 12 12:25 ATLAS.root_0
[2026-03-12 12:28:39] -rw-r--r-- 2 boinc boinc    597537 Mar 12 12:25 input.tar.gz
[2026-03-12 12:28:39] -rw-r--r-- 2 boinc boinc     15845 Mar 12 12:25 start_atlas.sh
[2026-03-12 12:28:39] -rw------- 1 boinc boinc    102400 Mar 12 12:28 result.tar.gz
12:28:41 (2050129): run_atlas exited; CPU time 19.408299
12:28:41 (2050129): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN