Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:14:49 (2206): wrapper (7.7.26015): starting
02:14:49 (2206): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 02:14:49] Arguments: --nthreads 8
[2026-03-12 02:14:49] Threads: 8
[2026-03-12 02:14:49] Checking for CVMFS
[2026-03-12 02:14:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 02:14:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 02:14:51] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 02:14:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 02:14:51] 2.11.0.0 4414 217478 92924 157178 4 3 2542681 4096001 3668 130560 15 25528840 99.746 12461220 438 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-12 02:14:51] CVMFS is ok
[2026-03-12 02:14:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 02:14:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 02:14:51] Further information can be found at the LHC@home message board.
[2026-03-12 02:14:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 02:14:51] Checking for apptainer binary...
[2026-03-12 02:14:51] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-12 02:14:51] apptainer is not installed, using version from CVMFS
[2026-03-12 02:14:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 02:14:52] WARNING: Environment variable TMPDIR already has value [/tmp/job_11295525/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node324
[2026-03-12 02:14:52] apptainer works
[2026-03-12 02:14:52] Set ATHENA_PROC_NUMBER=8
[2026-03-12 02:14:52] Set ATHENA_CORE_NUMBER=8
[2026-03-12 02:14:52] Starting ATLAS job with PandaID=7042187669
[2026-03-12 02:14:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11295525/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 03:04:09]  *** The last 200 lines of the pilot log: ***
[2026-03-12 03:04:09]  domain=
[2026-03-12 03:04:09]  filesize=334559
[2026-03-12 03:04:09]  filetype=log
[2026-03-12 03:04:09]  guid=06ffb9cb-abaa-438a-bc4b-86708cf3d314
[2026-03-12 03:04:09]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-12 03:04:09]  is_altstaged=None
[2026-03-12 03:04:09]  is_tar=False
[2026-03-12 03:04:09]  lfn=log.48955006._041441.job.log.tgz.1
[2026-03-12 03:04:09]  mtime=0
[2026-03-12 03:04:09]  protocol_id=None
[2026-03-12 03:04:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 03:04:09]  replicas=None
[2026-03-12 03:04:09]  scope=mc23_13p6TeV
[2026-03-12 03:04:09]  status=None
[2026-03-12 03:04:09]  status_code=0
[2026-03-12 03:04:09]  storage_token=
[2026-03-12 03:04:09]  surl=/tmp/job_11295525/atlas/pilot/slots/0/PanDA_Pilot-7042187669/log.48955006._041441.job.log.tgz.1
[2026-03-12 03:04:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/d3/log.48955006._041441.job.log.tgz.1
[2026-03-12 03:04:09]  workdir=None
[2026-03-12 03:04:09] ]
[2026-03-12 03:04:09] 2026-03-12 02:03:06,722 | INFO     | transferring file log.48955006._041441.job.log.tgz.1 from /tmp/job_11295525/atlas/pilot/slots/0/PanDA_Pilot-7042187669/log.48955006._041441.job.log.tgz.1 to /tmp/j
[2026-03-12 03:04:09] 2026-03-12 02:03:06,722 | INFO     | executing command: /usr/bin/env mv /tmp/job_11295525/atlas/pilot/slots/0/PanDA_Pilot-7042187669/log.48955006._041441.job.log.tgz.1 /tmp/job_11295525/atlas/pilot/sl
[2026-03-12 03:04:09] 2026-03-12 02:03:06,729 | INFO     | adding to output.list: log.48955006._041441.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/d3/log.48955006._041441.job.log.tg
[2026-03-12 03:04:09] 2026-03-12 02:03:06,730 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 03:04:09] 2026-03-12 02:03:06,730 | INFO     | summary of transferred files:
[2026-03-12 03:04:09] 2026-03-12 02:03:06,730 | INFO     |  -- lfn=log.48955006._041441.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 03:04:09] 2026-03-12 02:03:06,730 | INFO     | stage-out finished correctly
[2026-03-12 03:04:09] 2026-03-12 02:03:07,669 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 03:04:09] 2026-03-12 02:03:07,710 | INFO     | monitor loop #223: job 0:7042187669 is in state 'finished'
[2026-03-12 03:04:09] 2026-03-12 02:03:07,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 03:04:09] 2026-03-12 02:03:07,858 | INFO     | time since job start (2889s) is within the limit (349056.0s)
[2026-03-12 03:04:09] 2026-03-12 02:03:08,698 | INFO     | job 7042187669 has state=finished
[2026-03-12 03:04:09] 2026-03-12 02:03:08,699 | INFO     | preparing for final server update for job 7042187669 in state='finished'
[2026-03-12 03:04:09] 2026-03-12 02:03:08,699 | INFO     | reading metadata from: /tmp/job_11295525/atlas/pilot/slots/0/PanDA_Pilot-7042187669/jobReport.json
[2026-03-12 03:04:09] 2026-03-12 02:03:08,700 | INFO     | added worker_node to metadata from /tmp/job_11295525/atlas/pilot/slots/0/workernode_map.json
[2026-03-12 03:04:09] 2026-03-12 02:03:08,700 | INFO     | this job has now completed (state=finished)
[2026-03-12 03:04:09] 2026-03-12 02:03:08,700 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 03:04:09] 2026-03-12 02:03:08,700 | INFO     | log transfer has been attempted: DONE
[2026-03-12 03:04:09] 2026-03-12 02:03:08,700 | INFO     | job 7042187669 has finished - writing final server update
[2026-03-12 03:04:09] 2026-03-12 02:03:08,701 | INFO     | total number of processed events: 400 (read)
[2026-03-12 03:04:09] 2026-03-12 02:03:08,718 | INFO     | using path: /tmp/job_11295525/atlas/pilot/slots/0/PanDA_Pilot-7042187669/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 03:04:09] 2026-03-12 02:03:08,719 | INFO     | extracted standard info from prmon json
[2026-03-12 03:04:09] 2026-03-12 02:03:08,719 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 03:04:09] 2026-03-12 02:03:08,719 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 03:04:09] 2026-03-12 02:03:08,719 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 03:04:09] 2026-03-12 02:03:08,719 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 03:04:09] 2026-03-12 02:03:08,719 | INFO     | fitting pss+swap vs Time
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | sum of square deviations: 19832930.0
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | sum of deviations: -1350655991.5
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | mean x: 1773279610.5
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | mean y: 2909770.075
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | intersect: 120766242798.86154
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | chi2: 0.02380347568809102
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | current memory leak: -68.10 B/s (using 40 data points, chi2=0.02)
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | could have reported an average CPU frequency of 2864 MHz (5 samples)
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | ..............................
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | . Timing measurements:
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | . get job = 0 s
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | . initial setup = 2 s
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | . payload setup = 4 s
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | . stage-in = 0 s
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | . payload execution = 2869 s
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | . stage-out = 0 s
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | . log creation = 0 s
[2026-03-12 03:04:09] 2026-03-12 02:03:08,720 | INFO     | ..............................
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | 
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | job summary report
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | --------------------------------------------------
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | PanDA job id: 7042187669
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | task id: 48955006
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | errors: (none)
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | pilot state: finished 
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | transexitcode: 0
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | exeerrorcode: 0
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | exeerrordiag: 
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | exitcode: 0
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | exitmsg: OK
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | cpuconsumptiontime: 18810 s
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | nevents: 400
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | neventsw: 0
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | pid: 12915
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | pgrp: 12915
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | corecount: 8
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | event service: False
[2026-03-12 03:04:09] 2026-03-12 02:03:08,768 | INFO     | sizes: {0: 2280358, 11: 2280358, 2876: 2305902, 2877: 2314985, 2878: 2314985, 2879: 2315211}
[2026-03-12 03:04:09] 2026-03-12 02:03:08,769 | INFO     | --------------------------------------------------
[2026-03-12 03:04:09] 2026-03-12 02:03:08,769 | INFO     | 
[2026-03-12 03:04:09] 2026-03-12 02:03:08,769 | INFO     | executing command: ls -lF /tmp/job_11295525/atlas/pilot/slots/0
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,778 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,778 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,778 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 03:04:09] 2026-03-12 02:03:08,778 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,778 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 03:04:09] 2026-03-12 02:03:08,778 | INFO     | job 7042187669 has completed (purged errors)
[2026-03-12 03:04:09] 2026-03-12 02:03:08,778 | INFO     | overall cleanup function is called
[2026-03-12 03:04:09] 2026-03-12 02:03:09,784 | INFO     | --- collectZombieJob: --- 10, [12915]
[2026-03-12 03:04:09] 2026-03-12 02:03:09,784 | INFO     | zombie collector waiting for pid 12915
[2026-03-12 03:04:09] 2026-03-12 02:03:09,784 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 03:04:09] 2026-03-12 02:03:09,784 | INFO     | collected zombie processes
[2026-03-12 03:04:09] 2026-03-12 02:03:09,784 | INFO     | will attempt to kill all subprocesses of pid=12915
[2026-03-12 03:04:09] 2026-03-12 02:03:09,882 | INFO     | process IDs to be killed: [12915] (in reverse order)
[2026-03-12 03:04:09] 2026-03-12 02:03:09,913 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 03:04:09] 2026-03-12 02:03:09,913 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 03:04:09] 2026-03-12 02:03:09,917 | INFO     | did not find any defunct processes belonging to 12915
[2026-03-12 03:04:09] 2026-03-12 02:03:09,920 | INFO     | did not find any defunct processes belonging to 12915
[2026-03-12 03:04:09] 2026-03-12 02:03:09,920 | INFO     | ready for new job
[2026-03-12 03:04:09] 2026-03-12 02:03:09,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 03:04:09] 2026-03-12 02:03:09,921 | INFO     | **************************************
[2026-03-12 03:04:09] 2026-03-12 02:03:09,921 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 03:04:09] 2026-03-12 02:03:09,921 | INFO     | **************************************
[2026-03-12 03:04:09] 2026-03-12 02:03:09,921 | INFO     | 
[2026-03-12 03:04:09] 2026-03-12 02:03:09,935 | INFO     | architecture information:
[2026-03-12 03:04:09] 2026-03-12 02:03:09,935 | INFO     | executing command: cat /etc/os-release
[2026-03-12 03:04:09] 2026-03-12 02:03:09,940 | INFO     | cat /etc/os-release:
[2026-03-12 03:04:09] NAME="CentOS Linux"
[2026-03-12 03:04:09] VERSION="7 (Core)"
[2026-03-12 03:04:09] ID="centos"
[2026-03-12 03:04:09] ID_LIKE="rhel fedora"
[2026-03-12 03:04:09] VERSION_ID="7"
[2026-03-12 03:04:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 03:04:09] ANSI_COLOR="0;31"
[2026-03-12 03:04:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 03:04:09] HOME_URL="https://www.centos.org/"
[2026-03-12 03:04:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 03:04:09] 
[2026-03-12 03:04:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 03:04:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 03:04:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 03:04:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 03:04:09] 
[2026-03-12 03:04:09] 2026-03-12 02:03:09,940 | INFO     | **************************************
[2026-03-12 03:04:09] 2026-03-12 02:03:10,443 | INFO     | executing command: df -mP /tmp/job_11295525/atlas/pilot/slots/0
[2026-03-12 03:04:09] 2026-03-12 02:03:10,449 | INFO     | sufficient remaining disk space (226270117888 B)
[2026-03-12 03:04:09] 2026-03-12 02:03:10,449 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 03:04:09] 2026-03-12 02:03:10,449 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 03:04:09] 2026-03-12 02:03:10,449 | INFO     | update_server=False
[2026-03-12 03:04:09] 2026-03-12 02:03:10,449 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 03:04:09] 2026-03-12 02:03:10,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 03:04:09] 2026-03-12 02:03:10,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 03:04:09] 2026-03-12 02:03:10,574 | INFO     | all job control threads have been joined
[2026-03-12 03:04:09] 2026-03-12 02:03:11,106 | INFO     | all data control threads have been joined
[2026-03-12 03:04:09] 2026-03-12 02:03:11,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 03:04:09] 2026-03-12 02:03:11,225 | INFO     | aborting loop
[2026-03-12 03:04:09] 2026-03-12 02:03:11,450 | INFO     | [job] retrieve thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:11,455 | INFO     | [job] queue monitor thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:11,549 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:11,579 | INFO     | [job] control thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:11,635 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:11,668 | INFO     | [job] validate thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:11,782 | INFO     | all payload control threads have been joined
[2026-03-12 03:04:09] 2026-03-12 02:03:11,855 | INFO     | [payload] failed_post thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:11,964 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:12,111 | INFO     | [data] control thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:12,154 | INFO     | [payload] validate_post thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:12,230 | INFO     | [job] job monitor thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:12,455 | INFO     | [data] copytool_out thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:12,787 | INFO     | [payload] control thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:12,793 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:12,887 | INFO     | [data] copytool_in thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:13,723 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 03:04:09] 2026-03-12 02:03:17,728 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 03:04:09] 2026-03-12 02:03:41,040 | INFO     | PID=7098 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-12 03:04:09] 2026-03-12 02:03:41,040 | INFO     | .. there are 2 such processes running
[2026-03-12 03:04:09] 2026-03-12 02:03:41,040 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 03:04:09] 2026-03-12 02:03:41,040 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 03:04:09] 2026-03-12 02:03:41,040 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 03:04:09] 2026-03-12 02:04:02,996 | INFO     | [monitor] cgroup control has ended
[2026-03-12 03:04:09] 2026-03-12 02:04:04,599 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067393280)>']
[2026-03-12 03:04:09] 2026-03-12 02:04:05,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 03:04:09] 2026-03-12 02:04:05,158 | INFO     | [monitor] control thread has ended
[2026-03-12 03:04:09] 2026-03-12 02:04:09,623 | INFO     | all workflow threads have been joined
[2026-03-12 03:04:09] 2026-03-12 02:04:09,624 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 03:04:09] 2026-03-12 02:04:09,624 | INFO     | traces error code: 0
[2026-03-12 03:04:09] 2026-03-12 02:04:09,624 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 03:04:09] 2026-03-12 02:04:09,682 [wrapper] ==== pilot stdout END ====
[2026-03-12 03:04:09] 2026-03-12 02:04:09,683 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 03:04:09] 2026-03-12 02:04:09,684 [wrapper] pilotpid: 7098
[2026-03-12 03:04:09] 2026-03-12 02:04:09,685 [wrapper] Pilot exit status: 0
[2026-03-12 03:04:09] 2026-03-12 02:04:09,690 [wrapper] pandaids: 7042187669
[2026-03-12 03:04:09] 2026-03-12 02:04:09,712 [wrapper] cleanup supervisor_pilot 13286 7099
[2026-03-12 03:04:09] 2026-03-12 02:04:09,713 [wrapper] Test setup, not cleaning
[2026-03-12 03:04:09] 2026-03-12 02:04:09,715 [wrapper] apfmon messages muted
[2026-03-12 03:04:09] 2026-03-12 02:04:09,716 [wrapper] ==== wrapper stdout END ====
[2026-03-12 03:04:09] 2026-03-12 02:04:09,717 [wrapper] ==== wrapper stderr END ====
[2026-03-12 03:04:09]  *** Error codes and diagnostics ***
[2026-03-12 03:04:09]     "exeErrorCode": 0,
[2026-03-12 03:04:09]     "exeErrorDiag": "",
[2026-03-12 03:04:09]     "pilotErrorCode": 0,
[2026-03-12 03:04:09]     "pilotErrorDiag": "",
[2026-03-12 03:04:09]  *** Listing of results directory ***
[2026-03-12 03:04:09] total 619560
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user    584627 Mar 10 10:10 pilot3.tar.gz
[2026-03-12 03:04:09] -rwx------ 1 mf493845 unix-user     36322 Mar 10 10:56 runpilot2-wrapper.sh
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user      5111 Mar 10 10:56 queuedata.json
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user       100 Mar 12 00:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 03:04:09] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 12 00:23 run_atlas
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user       105 Mar 12 00:23 job.xml
[2026-03-12 03:04:09] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 12 02:14 start_atlas.sh
[2026-03-12 03:04:09] drwxrwx--x 2 mf493845 unix-user       100 Mar 12 02:14 shared
[2026-03-12 03:04:09] -rw-r--r-- 2 mf493845 unix-user    597963 Mar 12 02:14 input.tar.gz
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user      6390 Mar 12 02:14 init_data.xml
[2026-03-12 03:04:09] -rw-r--r-- 2 mf493845 unix-user 437826691 Mar 12 02:14 EVNT.46701403._000826.pool.root.1
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user         0 Mar 12 02:14 boinc_setup_complete
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user      8192 Mar 12 02:14 boinc_mmap_file
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user         0 Mar 12 02:14 boinc_lockfile
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user      2565 Mar 12 02:14 pandaJob.out
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user   1006235 Mar 12 02:14 agis_schedconf.cvmfs.json
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user   1511578 Mar 12 02:14 agis_ddmendpoints.agis.ALL.json
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user       416 Mar 12 02:14 workernode_map.json
[2026-03-12 03:04:09] drwx------ 5 mf493845 unix-user       440 Mar 12 02:14 pilot3
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user 191106081 Mar 12 03:02 HITS.48955006._041441.pool.root.1
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user      1022 Mar 12 03:03 memory_monitor_summary.json
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user    334559 Mar 12 03:03 log.48955006._041441.job.log.tgz.1
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user      6321 Mar 12 03:03 heartbeat.json
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user        95 Mar 12 03:03 pilot_heartbeat.json
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user      4830 Mar 12 03:04 pilotlog.txt
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user    461624 Mar 12 03:04 log.48955006._041441.job.log.1
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user       357 Mar 12 03:04 output.list
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user       620 Mar 12 03:04 runtime_log
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user    808960 Mar 12 03:04 result.tar.gz
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user      9219 Mar 12 03:04 runtime_log.err
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user       643 Mar 12 03:04 ntKNDmm08J9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmsdfLDmrI6Qvn.diag
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user     21617 Mar 12 03:04 stderr.txt
[2026-03-12 03:04:09] HITS file was successfully produced:
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user 191106081 Mar 12 03:02 shared/HITS.pool.root.1
[2026-03-12 03:04:09]  *** Contents of shared directory: ***
[2026-03-12 03:04:09] total 615588
[2026-03-12 03:04:09] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 12 02:14 start_atlas.sh
[2026-03-12 03:04:09] -rw-r--r-- 2 mf493845 unix-user    597963 Mar 12 02:14 input.tar.gz
[2026-03-12 03:04:09] -rw-r--r-- 2 mf493845 unix-user 437826691 Mar 12 02:14 ATLAS.root_0
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user 191106081 Mar 12 03:02 HITS.pool.root.1
[2026-03-12 03:04:09] -rw------- 1 mf493845 unix-user    808960 Mar 12 03:04 result.tar.gz
03:04:11 (2206): run_atlas exited; CPU time 18845.387361
03:04:11 (2206): called boinc_finish(0)

</stderr_txt>
]]>

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