Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:06:33 (481008): wrapper (7.7.26015): starting
02:06:33 (481008): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 02:06:33] Arguments: --nthreads 4
[2026-03-14 02:06:33] Threads: 4
[2026-03-14 02:06:33] Checking for CVMFS
[2026-03-14 02:06:33] No cvmfs_config command found, will try listing directly
[2026-03-14 02:06:33] CVMFS is ok
[2026-03-14 02:06:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 02:06:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 02:06:33] Further information can be found at the LHC@home message board.
[2026-03-14 02:06:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 02:06:33] Checking for apptainer binary...
[2026-03-14 02:06:33] which: no apptainer in ((null))
[2026-03-14 02:06:33] apptainer is not installed, using version from CVMFS
[2026-03-14 02:06:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 02:06:33] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot156/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-14 02:06:33] apptainer works
[2026-03-14 02:06:33] Set ATHENA_PROC_NUMBER=4
[2026-03-14 02:06:33] Set ATHENA_CORE_NUMBER=4
[2026-03-14 02:06:33] Starting ATLAS job with PandaID=7040404583
[2026-03-14 02:06:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot156/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 03:41:03]  *** The last 200 lines of the pilot log: ***
[2026-03-14 03:41:03]  mtime=0
[2026-03-14 03:41:03]  protocol_id=None
[2026-03-14 03:41:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-14 03:41:03]  replicas=None
[2026-03-14 03:41:03]  scope=mc23_13p6TeV
[2026-03-14 03:41:03]  status=None
[2026-03-14 03:41:03]  status_code=0
[2026-03-14 03:41:03]  storage_token=
[2026-03-14 03:41:03]  surl=/var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7040404583/log.48973452._001310.job.log.tgz.1
[2026-03-14 03:41:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/58/log.48973452._001310.job.log.tgz.1
[2026-03-14 03:41:03]  workdir=None
[2026-03-14 03:41:03] ]
[2026-03-14 03:41:03] 2026-03-14 02:40:12,068 | INFO     | transferring file log.48973452._001310.job.log.tgz.1 from /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7040404583/log.48973452._001310.job.log.tgz.1 to /var/lib/
[2026-03-14 03:41:03] 2026-03-14 02:40:12,068 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7040404583/log.48973452._001310.job.log.tgz.1 /var/lib/boinc/var/slot156/slots/0/
[2026-03-14 03:41:03] 2026-03-14 02:40:12,085 | INFO     | adding to output.list: log.48973452._001310.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/58/log.48973452._001310.job.log.tg
[2026-03-14 03:41:03] 2026-03-14 02:40:12,085 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 03:41:03] 2026-03-14 02:40:12,085 | INFO     | summary of transferred files:
[2026-03-14 03:41:03] 2026-03-14 02:40:12,086 | INFO     |  -- lfn=log.48973452._001310.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 03:41:03] 2026-03-14 02:40:12,086 | INFO     | stage-out finished correctly
[2026-03-14 03:41:03] 2026-03-14 02:40:12,199 | INFO     | PID=485559 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 03:41:03] 2026-03-14 02:40:12,199 | INFO     | .. there are 49 such processes running
[2026-03-14 03:41:03] 2026-03-14 02:40:13,199 | INFO     | time since job start (5606s) is within the limit (349056.0s)
[2026-03-14 03:41:03] 2026-03-14 02:40:13,318 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 03:41:03] 2026-03-14 02:40:14,316 | WARNING  | process 491584 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 03:41:03] 2026-03-14 02:40:14,320 | INFO     | using path: /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7040404583/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 03:41:03] 2026-03-14 02:40:14,822 | INFO     | number of running child processes to parent process 491584: 1
[2026-03-14 03:41:03] 2026-03-14 02:40:14,822 | INFO     | maximum number of monitored processes: 6
[2026-03-14 03:41:03] 2026-03-14 02:40:15,204 | INFO     | time since job start (5608s) is within the limit (349056.0s)
[2026-03-14 03:41:03] 2026-03-14 02:40:15,388 | INFO     | job 7040404583 has state=finished
[2026-03-14 03:41:03] 2026-03-14 02:40:15,388 | INFO     | preparing for final server update for job 7040404583 in state='finished'
[2026-03-14 03:41:03] 2026-03-14 02:40:15,925 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-14 03:41:03] 2026-03-14 02:40:15,925 | INFO     | reading metadata from: /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7040404583/jobReport.json
[2026-03-14 03:41:03] 2026-03-14 02:40:15,927 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot156/slots/0/workernode_map.json
[2026-03-14 03:41:03] 2026-03-14 02:40:15,927 | INFO     | this job has now completed (state=finished)
[2026-03-14 03:41:03] 2026-03-14 02:40:15,927 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 03:41:03] 2026-03-14 02:40:15,927 | INFO     | log transfer has been attempted: DONE
[2026-03-14 03:41:03] 2026-03-14 02:40:15,927 | INFO     | job 7040404583 has finished - writing final server update
[2026-03-14 03:41:03] 2026-03-14 02:40:15,928 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1893887/.job.ad'
[2026-03-14 03:41:03] 2026-03-14 02:40:15,928 | INFO     | total number of processed events: 400 (read)
[2026-03-14 03:41:03] 2026-03-14 02:40:15,946 | INFO     | using path: /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7040404583/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 03:41:03] 2026-03-14 02:40:15,947 | INFO     | extracted standard info from prmon json
[2026-03-14 03:41:03] 2026-03-14 02:40:15,947 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 03:41:03] 2026-03-14 02:40:15,947 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 03:41:03] 2026-03-14 02:40:15,947 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 03:41:03] 2026-03-14 02:40:15,947 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 03:41:03] 2026-03-14 02:40:15,948 | INFO     | fitting pss+swap vs Time
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | sum of square deviations: 190403570.0
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | sum of deviations: 1071122729.0000001
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | mean x: 1773453296.0
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | mean y: 2330843.0470588235
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | intersect: -9974300026.665968
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | chi2: 0.0002945908521510533
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | current memory leak: 5.63 B/s (using 85 data points, chi2=0.00)
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | could have reported an average CPU frequency of 3575 MHz (7 samples)
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | ..............................
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | . Timing measurements:
[2026-03-14 03:41:03] 2026-03-14 02:40:15,949 | INFO     | . get job = 0 s
[2026-03-14 03:41:03] 2026-03-14 02:40:15,950 | INFO     | . initial setup = 5 s
[2026-03-14 03:41:03] 2026-03-14 02:40:15,950 | INFO     | . payload setup = 5 s
[2026-03-14 03:41:03] 2026-03-14 02:40:15,950 | INFO     | . stage-in = 0 s
[2026-03-14 03:41:03] 2026-03-14 02:40:15,950 | INFO     | . payload execution = 5583 s
[2026-03-14 03:41:03] 2026-03-14 02:40:15,950 | INFO     | . stage-out = 0 s
[2026-03-14 03:41:03] 2026-03-14 02:40:15,950 | INFO     | . log creation = 0 s
[2026-03-14 03:41:03] 2026-03-14 02:40:15,950 | INFO     | ..............................
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | 
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | job summary report
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | --------------------------------------------------
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | PanDA job id: 7040404583
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | task id: 48973452
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | errors: (none)
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | pilot state: finished 
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | transexitcode: 0
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | exeerrorcode: 0
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | exeerrordiag: 
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | exitcode: 0
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | exitmsg: OK
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | cpuconsumptiontime: 21012 s
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | nevents: 400
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | neventsw: 0
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | pid: 491584
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | pgrp: 491584
[2026-03-14 03:41:03] 2026-03-14 02:40:16,005 | INFO     | corecount: 4
[2026-03-14 03:41:03] 2026-03-14 02:40:16,006 | INFO     | event service: False
[2026-03-14 03:41:03] 2026-03-14 02:40:16,006 | INFO     | sizes: {0: 2279794, 1: 2280311, 11: 2280311, 5593: 2307023, 5594: 2316045, 5595: 2316101, 5598: 2316423}
[2026-03-14 03:41:03] 2026-03-14 02:40:16,006 | INFO     | --------------------------------------------------
[2026-03-14 03:41:03] 2026-03-14 02:40:16,006 | INFO     | 
[2026-03-14 03:41:03] 2026-03-14 02:40:16,006 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot156/slots/0
[2026-03-14 03:41:03] 2026-03-14 02:40:16,028 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 03:41:03] 2026-03-14 02:40:16,029 | INFO     | job 7040404583 has completed (purged errors)
[2026-03-14 03:41:03] 2026-03-14 02:40:16,030 | INFO     | overall cleanup function is called
[2026-03-14 03:41:03] 2026-03-14 02:40:17,036 | INFO     | --- collectZombieJob: --- 10, [491584]
[2026-03-14 03:41:03] 2026-03-14 02:40:17,036 | INFO     | zombie collector waiting for pid 491584
[2026-03-14 03:41:03] 2026-03-14 02:40:17,036 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 03:41:03] 2026-03-14 02:40:17,037 | INFO     | collected zombie processes
[2026-03-14 03:41:03] 2026-03-14 02:40:17,037 | INFO     | will attempt to kill all subprocesses of pid=491584
[2026-03-14 03:41:03] 2026-03-14 02:40:17,531 | INFO     | process IDs to be killed: [491584] (in reverse order)
[2026-03-14 03:41:03] 2026-03-14 02:40:17,857 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 03:41:03] 2026-03-14 02:40:17,857 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 03:41:03] 2026-03-14 02:40:17,888 | INFO     | did not find any defunct processes belonging to 491584
[2026-03-14 03:41:03] 2026-03-14 02:40:17,917 | INFO     | did not find any defunct processes belonging to 491584
[2026-03-14 03:41:03] 2026-03-14 02:40:17,917 | INFO     | ready for new job
[2026-03-14 03:41:03] 2026-03-14 02:40:17,917 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 03:41:03] 2026-03-14 02:40:17,918 | INFO     | **************************************
[2026-03-14 03:41:03] 2026-03-14 02:40:17,919 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-14 03:41:03] 2026-03-14 02:40:17,919 | INFO     | **************************************
[2026-03-14 03:41:03] 2026-03-14 02:40:17,919 | INFO     | 
[2026-03-14 03:41:03] 2026-03-14 02:40:17,924 | INFO     | architecture information:
[2026-03-14 03:41:03] 2026-03-14 02:40:17,924 | INFO     | executing command: cat /etc/os-release
[2026-03-14 03:41:03] 2026-03-14 02:40:17,940 | INFO     | cat /etc/os-release:
[2026-03-14 03:41:03] NAME="CentOS Linux"
[2026-03-14 03:41:03] VERSION="7 (Core)"
[2026-03-14 03:41:03] ID="centos"
[2026-03-14 03:41:03] ID_LIKE="rhel fedora"
[2026-03-14 03:41:03] VERSION_ID="7"
[2026-03-14 03:41:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 03:41:03] ANSI_COLOR="0;31"
[2026-03-14 03:41:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 03:41:03] HOME_URL="https://www.centos.org/"
[2026-03-14 03:41:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 03:41:03] 
[2026-03-14 03:41:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 03:41:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 03:41:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 03:41:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 03:41:03] 
[2026-03-14 03:41:03] 2026-03-14 02:40:17,940 | INFO     | **************************************
[2026-03-14 03:41:03] 2026-03-14 02:40:18,442 | INFO     | executing command: df -mP /var/lib/boinc/var/slot156/slots/0
[2026-03-14 03:41:03] 2026-03-14 02:40:18,462 | INFO     | sufficient remaining disk space (20163067904 B)
[2026-03-14 03:41:03] 2026-03-14 02:40:18,462 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 03:41:03] 2026-03-14 02:40:18,462 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 03:41:03] 2026-03-14 02:40:18,462 | INFO     | update_server=False
[2026-03-14 03:41:03] 2026-03-14 02:40:18,462 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 03:41:03] 2026-03-14 02:40:18,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 03:41:03] 2026-03-14 02:40:18,463 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 03:41:03] 2026-03-14 02:40:18,463 | INFO     | aborting loop
[2026-03-14 03:41:03] 2026-03-14 02:40:18,467 | INFO     | all data control threads have been joined
[2026-03-14 03:41:03] 2026-03-14 02:40:19,051 | INFO     | all job control threads have been joined
[2026-03-14 03:41:03] 2026-03-14 02:40:19,338 | INFO     | all payload control threads have been joined
[2026-03-14 03:41:03] 2026-03-14 02:40:19,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 03:41:03] 2026-03-14 02:40:19,467 | INFO     | [job] retrieve thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:19,468 | INFO     | [job] job monitor thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:19,472 | INFO     | [data] control thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:19,580 | INFO     | [payload] failed_post thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:19,637 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:19,768 | INFO     | [job] validate thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:20,013 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:20,056 | INFO     | [job] control thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:20,327 | INFO     | [payload] validate_post thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:20,343 | INFO     | [payload] control thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:20,468 | INFO     | [data] copytool_out thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:20,509 | INFO     | [data] copytool_in thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:20,910 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:21,014 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 03:41:03] 2026-03-14 02:40:22,019 | INFO     | [job] queue monitor thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:23,375 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:29,501 | INFO     | job.realtimelogging is not enabled
[2026-03-14 03:41:03] 2026-03-14 02:40:30,506 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 03:41:03] 2026-03-14 02:40:48,952 | INFO     | PID=485559 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 03:41:03] 2026-03-14 02:40:48,952 | INFO     | .. there are 49 such processes running
[2026-03-14 03:41:03] 2026-03-14 02:40:48,952 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 03:41:03] 2026-03-14 02:40:48,952 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 03:41:03] 2026-03-14 02:40:48,952 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 03:41:03] 2026-03-14 02:40:56,559 | INFO     | [monitor] cgroup control has ended
[2026-03-14 03:41:03] 2026-03-14 02:40:57,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22821704177472)>', '<ExcThread(monitor, started 22821465241344)>']
[2026-03-14 03:41:03] 2026-03-14 02:40:57,998 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 03:41:03] 2026-03-14 02:40:57,998 | INFO     | [monitor] control thread has ended
[2026-03-14 03:41:03] 2026-03-14 02:41:02,410 | INFO     | all workflow threads have been joined
[2026-03-14 03:41:03] 2026-03-14 02:41:02,410 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 03:41:03] 2026-03-14 02:41:02,410 | INFO     | traces error code: 0
[2026-03-14 03:41:03] 2026-03-14 02:41:02,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 03:41:03] 2026-03-14 02:41:02,551 [wrapper] ==== pilot stdout END ====
[2026-03-14 03:41:03] 2026-03-14 02:41:02,554 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 03:41:03] 2026-03-14 02:41:02,560 [wrapper] pilotpid: 485559
[2026-03-14 03:41:03] 2026-03-14 02:41:02,563 [wrapper] Pilot exit status: 0
[2026-03-14 03:41:03] 2026-03-14 02:41:02,586 [wrapper] pandaids: 7040404583
[2026-03-14 03:41:03] 2026-03-14 02:41:02,763 [wrapper] cleanup supervisor_pilot 1294466 485560
[2026-03-14 03:41:03] 2026-03-14 02:41:02,778 [wrapper] Test setup, not cleaning
[2026-03-14 03:41:03] 2026-03-14 02:41:02,785 [wrapper] apfmon messages muted
[2026-03-14 03:41:03] 2026-03-14 02:41:02,797 [wrapper] ==== wrapper stdout END ====
[2026-03-14 03:41:03] 2026-03-14 02:41:02,813 [wrapper] ==== wrapper stderr END ====
[2026-03-14 03:41:03]  *** Error codes and diagnostics ***
[2026-03-14 03:41:03]     "exeErrorCode": 0,
[2026-03-14 03:41:03]     "exeErrorDiag": "",
[2026-03-14 03:41:03]     "pilotErrorCode": 0,
[2026-03-14 03:41:03]     "pilotErrorDiag": "",
[2026-03-14 03:41:03]  *** Listing of results directory ***
[2026-03-14 03:41:03] total 502796
[2026-03-14 03:41:03] -rwx------. 1 boinc boinc     36322 Mar  4 19:35 runpilot2-wrapper.sh
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc    584627 Mar  4 19:35 pilot3.tar.gz
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc      5111 Mar  4 19:35 queuedata.json
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc       100 Mar 14 02:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 03:41:03] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 02:06 run_atlas
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc       105 Mar 14 02:06 job.xml
[2026-03-14 03:41:03] -rw-r--r--. 2 boinc boinc 296802425 Mar 14 02:06 EVNT.48717224._000053.pool.root.1
[2026-03-14 03:41:03] -rw-r--r--. 2 boinc boinc     15845 Mar 14 02:06 start_atlas.sh
[2026-03-14 03:41:03] drwxrwx--x. 2 boinc boinc      4096 Mar 14 02:06 shared
[2026-03-14 03:41:03] -rw-r--r--. 2 boinc boinc    597950 Mar 14 02:06 input.tar.gz
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc      6709 Mar 14 02:06 init_data.xml
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc         0 Mar 14 02:06 boinc_lockfile
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc      2595 Mar 14 02:06 pandaJob.out
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc   1006713 Mar 14 02:06 agis_schedconf.cvmfs.json
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc   1511579 Mar 14 02:06 agis_ddmendpoints.agis.ALL.json
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc       444 Mar 14 02:06 workernode_map.json
[2026-03-14 03:41:03] drwx------. 5 boinc boinc      4096 Mar 14 02:06 pilot3
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc 211948358 Mar 14 03:39 HITS.48973452._001310.pool.root.1
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc       529 Mar 14 03:39 boinc_task_state.xml
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc        95 Mar 14 03:40 pilot_heartbeat.json
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc      1031 Mar 14 03:40 memory_monitor_summary.json
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc    275624 Mar 14 03:40 log.48973452._001310.job.log.tgz.1
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc      6348 Mar 14 03:40 heartbeat.json
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc        27 Mar 14 03:40 wrapper_checkpoint.txt
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc      8192 Mar 14 03:40 boinc_mmap_file
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc      4901 Mar 14 03:41 pilotlog.txt
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc    810684 Mar 14 03:41 log.48973452._001310.job.log.1
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc       357 Mar 14 03:41 output.list
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc       620 Mar 14 03:41 runtime_log
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc   1105920 Mar 14 03:41 result.tar.gz
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc      9221 Mar 14 03:41 runtime_log.err
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc       663 Mar 14 03:41 atmNDmuE6H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmcKJLDmeEdeBn.diag
[2026-03-14 03:41:03] -rw-r--r--. 1 boinc boinc     21675 Mar 14 03:41 stderr.txt
[2026-03-14 03:41:03] HITS file was successfully produced:
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc 211948358 Mar 14 03:39 shared/HITS.pool.root.1
[2026-03-14 03:41:03]  *** Contents of shared directory: ***
[2026-03-14 03:41:03] total 498520
[2026-03-14 03:41:03] -rw-r--r--. 2 boinc boinc 296802425 Mar 14 02:06 ATLAS.root_0
[2026-03-14 03:41:03] -rw-r--r--. 2 boinc boinc     15845 Mar 14 02:06 start_atlas.sh
[2026-03-14 03:41:03] -rw-r--r--. 2 boinc boinc    597950 Mar 14 02:06 input.tar.gz
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc 211948358 Mar 14 03:39 HITS.pool.root.1
[2026-03-14 03:41:03] -rw-------. 1 boinc boinc   1105920 Mar 14 03:41 result.tar.gz
03:41:04 (481008): run_atlas exited; CPU time 21269.281918
03:41:04 (481008): called boinc_finish(0)

</stderr_txt>
]]>

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