Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:40:12 (3669885): wrapper (7.7.26015): starting
18:40:12 (3669885): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 18:40:12] Arguments: --nthreads 4
[2026-03-12 18:40:12] Threads: 4
[2026-03-12 18:40:12] Checking for CVMFS
[2026-03-12 18:40:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 18:40:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 18:40:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 18:40:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 18:40:13] 2.9.2.0 3074 20174 109120 157210 3 49 29444674 36864000 0 130560 0 9204698 99.985 761664 14226 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 18:40:13] CVMFS is ok
[2026-03-12 18:40:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 18:40:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 18:40:13] Further information can be found at the LHC@home message board.
[2026-03-12 18:40:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 18:40:13] Checking for apptainer binary...
[2026-03-12 18:40:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 18:40:13] Running /usr/bin/apptainer --version
[2026-03-12 18:40:13] apptainer version 1.4.1-1.1
[2026-03-12 18:40:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 18:40:13] thA314
[2026-03-12 18:40:13] apptainer works
[2026-03-12 18:40:13] Set ATHENA_PROC_NUMBER=4
[2026-03-12 18:40:13] Set ATHENA_CORE_NUMBER=4
[2026-03-12 18:40:13] Starting ATLAS job with PandaID=7050047092
[2026-03-12 18:40:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 20:07:47]  *** The last 200 lines of the pilot log: ***
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | job 7050047092 has completed (purged errors)
[2026-03-12 20:07:47] 2026-03-12 19:07:15,198 | INFO     | overall cleanup function is called
[2026-03-12 20:07:47] 2026-03-12 19:07:16,200 | INFO     | --- collectZombieJob: --- 10, [3678520]
[2026-03-12 20:07:47] 2026-03-12 19:07:16,200 | INFO     | zombie collector waiting for pid 3678520
[2026-03-12 20:07:47] 2026-03-12 19:07:16,201 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 20:07:47] 2026-03-12 19:07:16,201 | INFO     | collected zombie processes
[2026-03-12 20:07:47] 2026-03-12 19:07:16,201 | INFO     | will attempt to kill all subprocesses of pid=3678520
[2026-03-12 20:07:47] 2026-03-12 19:07:16,255 | INFO     | process IDs to be killed: [3678520] (in reverse order)
[2026-03-12 20:07:47] 2026-03-12 19:07:16,291 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 20:07:47] 2026-03-12 19:07:16,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 20:07:47] 2026-03-12 19:07:16,294 | INFO     | did not find any defunct processes belonging to 3678520
[2026-03-12 20:07:47] 2026-03-12 19:07:16,295 | INFO     | did not find any defunct processes belonging to 3678520
[2026-03-12 20:07:47] 2026-03-12 19:07:16,295 | INFO     | ready for new job
[2026-03-12 20:07:47] 2026-03-12 19:07:16,295 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 20:07:47] 2026-03-12 19:07:16,296 | INFO     | **************************************
[2026-03-12 20:07:47] 2026-03-12 19:07:16,296 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 20:07:47] 2026-03-12 19:07:16,296 | INFO     | **************************************
[2026-03-12 20:07:47] 2026-03-12 19:07:16,296 | INFO     | 
[2026-03-12 20:07:47] 2026-03-12 19:07:16,297 | INFO     | architecture information:
[2026-03-12 20:07:47] 2026-03-12 19:07:16,297 | INFO     | executing command: cat /etc/os-release
[2026-03-12 20:07:47] 2026-03-12 19:07:16,311 | INFO     | cat /etc/os-release:
[2026-03-12 20:07:47] NAME="CentOS Linux"
[2026-03-12 20:07:47] VERSION="7 (Core)"
[2026-03-12 20:07:47] ID="centos"
[2026-03-12 20:07:47] ID_LIKE="rhel fedora"
[2026-03-12 20:07:47] VERSION_ID="7"
[2026-03-12 20:07:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 20:07:47] ANSI_COLOR="0;31"
[2026-03-12 20:07:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 20:07:47] HOME_URL="https://www.centos.org/"
[2026-03-12 20:07:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 20:07:47] 
[2026-03-12 20:07:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 20:07:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 20:07:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 20:07:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 20:07:47] 
[2026-03-12 20:07:47] 2026-03-12 19:07:16,312 | INFO     | **************************************
[2026-03-12 20:07:47] 2026-03-12 19:07:16,815 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 20:07:47] 2026-03-12 19:07:16,831 | INFO     | sufficient remaining disk space (227856613376 B)
[2026-03-12 20:07:47] 2026-03-12 19:07:16,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 20:07:47] 2026-03-12 19:07:16,831 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 20:07:47] 2026-03-12 19:07:16,831 | INFO     | update_server=False
[2026-03-12 20:07:47] 2026-03-12 19:07:16,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 20:07:47] 2026-03-12 19:07:16,888 | INFO     | all job control threads have been joined
[2026-03-12 20:07:47] 2026-03-12 19:07:17,100 | INFO     | all payload control threads have been joined
[2026-03-12 20:07:47] 2026-03-12 19:07:17,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 20:07:47] 2026-03-12 19:07:17,425 | INFO     | aborting loop
[2026-03-12 20:07:47] 2026-03-12 19:07:17,429 | INFO     | all data control threads have been joined
[2026-03-12 20:07:47] 2026-03-12 19:07:17,837 | INFO     | [job] retrieve thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:17,882 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:17,893 | INFO     | [job] control thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:17,896 | INFO     | [payload] failed_post thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:17,932 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:18,081 | INFO     | [data] copytool_in thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:18,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 20:07:47] 2026-03-12 19:07:18,106 | INFO     | [payload] control thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:18,430 | INFO     | [job] job monitor thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:18,435 | INFO     | [data] control thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:18,742 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:18,984 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 20:07:47] 2026-03-12 19:07:19,163 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:19,181 | INFO     | [payload] validate_post thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:19,210 | INFO     | [job] validate thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:19,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 20:07:47] 2026-03-12 19:07:20,105 | INFO     | [data] copytool_out thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:20,748 | INFO     | [job] queue monitor thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:22,990 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 20:07:47] 2026-03-12 19:07:31,427 | INFO     | [monitor] cgroup control has ended
[2026-03-12 20:07:47] 2026-03-12 19:07:31,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139831396734784)>', '<ExcThread(monitor, started 139830772098816)>']
[2026-03-12 20:07:47] 2026-03-12 19:07:36,676 | INFO     | all workflow threads have been joined
[2026-03-12 20:07:47] 2026-03-12 19:07:36,677 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 20:07:47] 2026-03-12 19:07:36,677 | INFO     | traces error code: 0
[2026-03-12 20:07:47] 2026-03-12 19:07:36,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 20:07:47] 2026-03-12 19:07:47,493 | INFO     | PID=3674001 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 20:07:47] 2026-03-12 19:07:47,493 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 20:07:47] 2026-03-12 19:07:47,493 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 20:07:47] 2026-03-12 19:07:47,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 20:07:47] 2026-03-12 19:07:47,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 20:07:47] 2026-03-12 19:07:47,494 | INFO     | [monitor] control thread has ended
[2026-03-12 20:07:47] 2026-03-12 19:07:47,569 [wrapper] ==== pilot stdout END ====
[2026-03-12 20:07:47] 2026-03-12 19:07:47,573 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 20:07:47] 2026-03-12 19:07:47,577 [wrapper] pilotpid: 3674001
[2026-03-12 20:07:47] 2026-03-12 19:07:47,581 [wrapper] Pilot exit status: 0
[2026-03-12 20:07:47] 2026-03-12 19:07:47,592 [wrapper] pandaids: 7050047092
[2026-03-12 20:07:47] 2026-03-12 19:07:47,616 [wrapper] cleanup supervisor_pilot 3685339 3674002
[2026-03-12 20:07:47] 2026-03-12 19:07:47,620 [wrapper] Test setup, not cleaning
[2026-03-12 20:07:47] 2026-03-12 19:07:47,624 [wrapper] apfmon messages muted
[2026-03-12 20:07:47] 2026-03-12 19:07:47,627 [wrapper] ==== wrapper stdout END ====
[2026-03-12 20:07:47] 2026-03-12 19:07:47,631 [wrapper] ==== wrapper stderr END ====
[2026-03-12 20:07:47]  *** Error codes and diagnostics ***
[2026-03-12 20:07:47]     "exeErrorCode": 0,
[2026-03-12 20:07:47]     "exeErrorDiag": "",
[2026-03-12 20:07:47]     "pilotErrorCode": 0,
[2026-03-12 20:07:47]     "pilotErrorDiag": "",
[2026-03-12 20:07:47]  *** Listing of results directory ***
[2026-03-12 20:07:47] total 410692
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc    585013 Mar 11 18:00 pilot3.tar.gz
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc      5111 Mar 11 18:28 queuedata.json
[2026-03-12 20:07:47] -rwx------ 1 boinc boinc     36322 Mar 11 18:29 runpilot2-wrapper.sh
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc       100 Mar 12 18:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 20:07:47] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 18:40 run_atlas
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc       105 Mar 12 18:40 job.xml
[2026-03-12 20:07:47] -rw-r--r-- 2 boinc boinc 211141086 Mar 12 18:40 EVNT.48967083._000451.pool.root.1
[2026-03-12 20:07:47] -rw-r--r-- 2 boinc boinc    597526 Mar 12 18:40 input.tar.gz
[2026-03-12 20:07:47] -rw-r--r-- 2 boinc boinc     15845 Mar 12 18:40 start_atlas.sh
[2026-03-12 20:07:47] drwxrwx--x 2 boinc boinc      4096 Mar 12 18:40 shared
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc         0 Mar 12 18:40 boinc_setup_complete
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc      6376 Mar 12 18:40 init_data.xml
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc         0 Mar 12 18:40 boinc_lockfile
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc      2563 Mar 12 18:40 pandaJob.out
[2026-03-12 20:07:47] -rw------- 1 boinc boinc   1006522 Mar 12 18:40 agis_schedconf.cvmfs.json
[2026-03-12 20:07:47] -rw------- 1 boinc boinc   1511578 Mar 12 18:40 agis_ddmendpoints.agis.ALL.json
[2026-03-12 20:07:47] -rw------- 1 boinc boinc       427 Mar 12 18:40 workernode_map.json
[2026-03-12 20:07:47] drwx------ 5 boinc boinc      4096 Mar 12 18:40 pilot3
[2026-03-12 20:07:47] -rw------- 1 boinc boinc        95 Mar 12 20:06 pilot_heartbeat.json
[2026-03-12 20:07:47] -rw------- 1 boinc boinc 203385452 Mar 12 20:06 HITS.48967085._010717.pool.root.1
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc       529 Mar 12 20:07 boinc_task_state.xml
[2026-03-12 20:07:47] -rw------- 1 boinc boinc      1020 Mar 12 20:07 memory_monitor_summary.json
[2026-03-12 20:07:47] -rw------- 1 boinc boinc    287504 Mar 12 20:07 log.48967085._010717.job.log.tgz.1
[2026-03-12 20:07:47] -rw------- 1 boinc boinc      6315 Mar 12 20:07 heartbeat.json
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc        27 Mar 12 20:07 wrapper_checkpoint.txt
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc      8192 Mar 12 20:07 boinc_mmap_file
[2026-03-12 20:07:47] -rw------- 1 boinc boinc       747 Mar 12 20:07 pilotlog.txt
[2026-03-12 20:07:47] -rw------- 1 boinc boinc    760432 Mar 12 20:07 log.48967085._010717.job.log.1
[2026-03-12 20:07:47] -rw------- 1 boinc boinc       357 Mar 12 20:07 output.list
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc       620 Mar 12 20:07 runtime_log
[2026-03-12 20:07:47] -rw------- 1 boinc boinc   1064960 Mar 12 20:07 result.tar.gz
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc      8896 Mar 12 20:07 runtime_log.err
[2026-03-12 20:07:47] -rw------- 1 boinc boinc       657 Mar 12 20:07 TczKDmrXcK9n9Rq4apOajLDm4fhM0noT9bVooX4SDm8fhLDmCMud6n.diag
[2026-03-12 20:07:47] -rw-r--r-- 1 boinc boinc     12448 Mar 12 20:07 stderr.txt
[2026-03-12 20:07:47] HITS file was successfully produced:
[2026-03-12 20:07:47] -rw------- 1 boinc boinc 203385452 Mar 12 20:06 shared/HITS.pool.root.1
[2026-03-12 20:07:47]  *** Contents of shared directory: ***
[2026-03-12 20:07:47] total 406464
[2026-03-12 20:07:47] -rw-r--r-- 2 boinc boinc 211141086 Mar 12 18:40 ATLAS.root_0
[2026-03-12 20:07:47] -rw-r--r-- 2 boinc boinc    597526 Mar 12 18:40 input.tar.gz
[2026-03-12 20:07:47] -rw-r--r-- 2 boinc boinc     15845 Mar 12 18:40 start_atlas.sh
[2026-03-12 20:07:47] -rw------- 1 boinc boinc 203385452 Mar 12 20:06 HITS.pool.root.1
[2026-03-12 20:07:47] -rw------- 1 boinc boinc   1064960 Mar 12 20:07 result.tar.gz
20:07:49 (3669885): run_atlas exited; CPU time 19759.886550
20:07:49 (3669885): called boinc_finish(0)

</stderr_txt>
]]>

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