Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:33:45 (10880): wrapper (7.7.26015): starting
23:33:45 (10880): wrapper: running run_atlas (--nthreads 8)
[2026-03-11 23:33:45] Arguments: --nthreads 8
[2026-03-11 23:33:45] Threads: 8
[2026-03-11 23:33:45] Checking for CVMFS
[2026-03-11 23:33:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 23:33:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 23:33:45] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 23:33:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 23:33:45] 2.11.0.0 6647 140513 75960 157173 0 188 2616118 4096000 4585 130560 3 4289258 99.342 6963240 296 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-11 23:33:45] CVMFS is ok
[2026-03-11 23:33:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 23:33:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 23:33:45] Further information can be found at the LHC@home message board.
[2026-03-11 23:33:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 23:33:45] Checking for apptainer binary...
[2026-03-11 23:33:45] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-11 23:33:45] apptainer is not installed, using version from CVMFS
[2026-03-11 23:33:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 23:33:45] WARNING: Environment variable TMPDIR already has value [/tmp/job_11295191/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node161
[2026-03-11 23:33:45] apptainer works
[2026-03-11 23:33:45] Set ATHENA_PROC_NUMBER=8
[2026-03-11 23:33:45] Set ATHENA_CORE_NUMBER=8
[2026-03-11 23:33:45] Starting ATLAS job with PandaID=7036369690
[2026-03-11 23:33:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11295191/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 00:11:02]  *** The last 200 lines of the pilot log: ***
[2026-03-12 00:11:02]  lfn=log.48700938._002954.job.log.tgz.1
[2026-03-12 00:11:02]  mtime=0
[2026-03-12 00:11:02]  protocol_id=None
[2026-03-12 00:11:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 00:11:02]  replicas=None
[2026-03-12 00:11:02]  scope=mc23_13p6TeV
[2026-03-12 00:11:02]  status=None
[2026-03-12 00:11:02]  status_code=0
[2026-03-12 00:11:02]  storage_token=
[2026-03-12 00:11:02]  surl=/tmp/job_11295191/atlas/pilot/slots/0/PanDA_Pilot-7036369690/log.48700938._002954.job.log.tgz.1
[2026-03-12 00:11:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/04/log.48700938._002954.job.log.tgz.1
[2026-03-12 00:11:02]  workdir=None
[2026-03-12 00:11:02] ]
[2026-03-12 00:11:02] 2026-03-11 23:09:59,133 | INFO     | transferring file log.48700938._002954.job.log.tgz.1 from /tmp/job_11295191/atlas/pilot/slots/0/PanDA_Pilot-7036369690/log.48700938._002954.job.log.tgz.1 to /tmp/j
[2026-03-12 00:11:02] 2026-03-11 23:09:59,133 | INFO     | executing command: /usr/bin/env mv /tmp/job_11295191/atlas/pilot/slots/0/PanDA_Pilot-7036369690/log.48700938._002954.job.log.tgz.1 /tmp/job_11295191/atlas/pilot/sl
[2026-03-12 00:11:02] 2026-03-11 23:09:59,141 | INFO     | adding to output.list: log.48700938._002954.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/04/log.48700938._002954.job.log.tg
[2026-03-12 00:11:02] 2026-03-11 23:09:59,142 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 00:11:02] 2026-03-11 23:09:59,142 | INFO     | summary of transferred files:
[2026-03-12 00:11:02] 2026-03-11 23:09:59,142 | INFO     |  -- lfn=log.48700938._002954.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 00:11:02] 2026-03-11 23:09:59,142 | INFO     | stage-out finished correctly
[2026-03-12 00:11:02] 2026-03-11 23:09:59,589 | INFO     | time since job start (2167s) is within the limit (349056.0s)
[2026-03-12 00:11:02] 2026-03-11 23:10:00,726 | INFO     | PID=14735 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 00:11:02] 2026-03-11 23:10:00,726 | INFO     | .. there are 5 such processes running
[2026-03-12 00:11:02] 2026-03-11 23:10:01,726 | INFO     | time since job start (2169s) is within the limit (349056.0s)
[2026-03-12 00:11:02] 2026-03-11 23:10:01,935 | WARNING  | process 19503 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 00:11:02] 2026-03-11 23:10:01,935 | INFO     | using path: /tmp/job_11295191/atlas/pilot/slots/0/PanDA_Pilot-7036369690/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 00:11:02] 2026-03-11 23:10:02,037 | INFO     | number of running child processes to parent process 19503: 1
[2026-03-12 00:11:02] 2026-03-11 23:10:02,037 | INFO     | maximum number of monitored processes: 6
[2026-03-12 00:11:02] 2026-03-11 23:10:02,677 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 00:11:02] 2026-03-11 23:10:03,731 | INFO     | time since job start (2171s) is within the limit (349056.0s)
[2026-03-12 00:11:02] 2026-03-11 23:10:04,028 | INFO     | job 7036369690 has state=finished
[2026-03-12 00:11:02] 2026-03-11 23:10:04,028 | INFO     | preparing for final server update for job 7036369690 in state='finished'
[2026-03-12 00:11:02] 2026-03-11 23:10:04,028 | INFO     | reading metadata from: /tmp/job_11295191/atlas/pilot/slots/0/PanDA_Pilot-7036369690/jobReport.json
[2026-03-12 00:11:02] 2026-03-11 23:10:04,030 | INFO     | added worker_node to metadata from /tmp/job_11295191/atlas/pilot/slots/0/workernode_map.json
[2026-03-12 00:11:02] 2026-03-11 23:10:04,030 | INFO     | this job has now completed (state=finished)
[2026-03-12 00:11:02] 2026-03-11 23:10:04,030 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 00:11:02] 2026-03-11 23:10:04,030 | INFO     | log transfer has been attempted: DONE
[2026-03-12 00:11:02] 2026-03-11 23:10:04,030 | INFO     | job 7036369690 has finished - writing final server update
[2026-03-12 00:11:02] 2026-03-11 23:10:04,030 | INFO     | total number of processed events: 400 (read)
[2026-03-12 00:11:02] 2026-03-11 23:10:04,047 | INFO     | using path: /tmp/job_11295191/atlas/pilot/slots/0/PanDA_Pilot-7036369690/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 00:11:02] 2026-03-11 23:10:04,047 | INFO     | extracted standard info from prmon json
[2026-03-12 00:11:02] 2026-03-11 23:10:04,047 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 00:11:02] 2026-03-11 23:10:04,047 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 00:11:02] 2026-03-11 23:10:04,047 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 00:11:02] 2026-03-11 23:10:04,047 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 00:11:02] 2026-03-11 23:10:04,048 | INFO     | fitting pss+swap vs Time
[2026-03-12 00:11:02] 2026-03-11 23:10:04,048 | INFO     | sum of square deviations: 7553630.0
[2026-03-12 00:11:02] 2026-03-11 23:10:04,048 | INFO     | sum of deviations: -170743208.99999997
[2026-03-12 00:11:02] 2026-03-11 23:10:04,048 | INFO     | mean x: 1773269607.0
[2026-03-12 00:11:02] 2026-03-11 23:10:04,048 | INFO     | mean y: 2654436.827586207
[2026-03-12 00:11:02] 2026-03-11 23:10:04,048 | INFO     | intersect: 40085865174.09547
[2026-03-12 00:11:02] 2026-03-11 23:10:04,048 | INFO     | chi2: 0.007378406429937436
[2026-03-12 00:11:02] 2026-03-11 23:10:04,048 | INFO     | current memory leak: -22.60 B/s (using 29 data points, chi2=0.01)
[2026-03-12 00:11:02] 2026-03-11 23:10:04,048 | INFO     | could have reported an average CPU frequency of 2989 MHz (5 samples)
[2026-03-12 00:11:02] 2026-03-11 23:10:04,048 | INFO     | ..............................
[2026-03-12 00:11:02] 2026-03-11 23:10:04,049 | INFO     | . Timing measurements:
[2026-03-12 00:11:02] 2026-03-11 23:10:04,049 | INFO     | . get job = 0 s
[2026-03-12 00:11:02] 2026-03-11 23:10:04,049 | INFO     | . initial setup = 2 s
[2026-03-12 00:11:02] 2026-03-11 23:10:04,049 | INFO     | . payload setup = 2 s
[2026-03-12 00:11:02] 2026-03-11 23:10:04,049 | INFO     | . stage-in = 0 s
[2026-03-12 00:11:02] 2026-03-11 23:10:04,049 | INFO     | . payload execution = 2149 s
[2026-03-12 00:11:02] 2026-03-11 23:10:04,049 | INFO     | . stage-out = 0 s
[2026-03-12 00:11:02] 2026-03-11 23:10:04,049 | INFO     | . log creation = 0 s
[2026-03-12 00:11:02] 2026-03-11 23:10:04,049 | INFO     | ..............................
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | 
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | job summary report
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | --------------------------------------------------
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | PanDA job id: 7036369690
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | task id: 48700938
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | errors: (none)
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | pilot state: finished 
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | transexitcode: 0
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | exeerrorcode: 0
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | exeerrordiag: 
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | exitcode: 0
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | exitmsg: OK
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | cpuconsumptiontime: 15578 s
[2026-03-12 00:11:02] 2026-03-11 23:10:04,094 | INFO     | nevents: 400
[2026-03-12 00:11:02] 2026-03-11 23:10:04,095 | INFO     | neventsw: 0
[2026-03-12 00:11:02] 2026-03-11 23:10:04,095 | INFO     | pid: 19503
[2026-03-12 00:11:02] 2026-03-11 23:10:04,095 | INFO     | pgrp: 19503
[2026-03-12 00:11:02] 2026-03-11 23:10:04,095 | INFO     | corecount: 8
[2026-03-12 00:11:02] 2026-03-11 23:10:04,095 | INFO     | event service: False
[2026-03-12 00:11:02] 2026-03-11 23:10:04,095 | INFO     | sizes: {0: 2280281, 11: 2280281, 2155: 2305450, 2156: 2314478, 2159: 2314534, 2160: 2314760}
[2026-03-12 00:11:02] 2026-03-11 23:10:04,095 | INFO     | --------------------------------------------------
[2026-03-12 00:11:02] 2026-03-11 23:10:04,095 | INFO     | 
[2026-03-12 00:11:02] 2026-03-11 23:10:04,095 | INFO     | executing command: ls -lF /tmp/job_11295191/atlas/pilot/slots/0
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,105 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,106 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 00:11:02] 2026-03-11 23:10:04,106 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,106 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 00:11:02] 2026-03-11 23:10:04,106 | INFO     | job 7036369690 has completed (purged errors)
[2026-03-12 00:11:02] 2026-03-11 23:10:04,106 | INFO     | overall cleanup function is called
[2026-03-12 00:11:02] 2026-03-11 23:10:05,108 | INFO     | --- collectZombieJob: --- 10, [19503]
[2026-03-12 00:11:02] 2026-03-11 23:10:05,108 | INFO     | zombie collector waiting for pid 19503
[2026-03-12 00:11:02] 2026-03-11 23:10:05,108 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 00:11:02] 2026-03-11 23:10:05,108 | INFO     | collected zombie processes
[2026-03-12 00:11:02] 2026-03-11 23:10:05,108 | INFO     | will attempt to kill all subprocesses of pid=19503
[2026-03-12 00:11:02] 2026-03-11 23:10:05,213 | INFO     | process IDs to be killed: [19503] (in reverse order)
[2026-03-12 00:11:02] 2026-03-11 23:10:05,251 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 00:11:02] 2026-03-11 23:10:05,251 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 00:11:02] 2026-03-11 23:10:05,255 | INFO     | did not find any defunct processes belonging to 19503
[2026-03-12 00:11:02] 2026-03-11 23:10:05,258 | INFO     | did not find any defunct processes belonging to 19503
[2026-03-12 00:11:02] 2026-03-11 23:10:05,258 | INFO     | ready for new job
[2026-03-12 00:11:02] 2026-03-11 23:10:05,258 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 00:11:02] 2026-03-11 23:10:05,259 | INFO     | **************************************
[2026-03-12 00:11:02] 2026-03-11 23:10:05,259 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 00:11:02] 2026-03-11 23:10:05,259 | INFO     | **************************************
[2026-03-12 00:11:02] 2026-03-11 23:10:05,259 | INFO     | 
[2026-03-12 00:11:02] 2026-03-11 23:10:05,273 | INFO     | architecture information:
[2026-03-12 00:11:02] 2026-03-11 23:10:05,273 | INFO     | executing command: cat /etc/os-release
[2026-03-12 00:11:02] 2026-03-11 23:10:05,279 | INFO     | cat /etc/os-release:
[2026-03-12 00:11:02] NAME="CentOS Linux"
[2026-03-12 00:11:02] VERSION="7 (Core)"
[2026-03-12 00:11:02] ID="centos"
[2026-03-12 00:11:02] ID_LIKE="rhel fedora"
[2026-03-12 00:11:02] VERSION_ID="7"
[2026-03-12 00:11:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 00:11:02] ANSI_COLOR="0;31"
[2026-03-12 00:11:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 00:11:02] HOME_URL="https://www.centos.org/"
[2026-03-12 00:11:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 00:11:02] 
[2026-03-12 00:11:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 00:11:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 00:11:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 00:11:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 00:11:02] 
[2026-03-12 00:11:02] 2026-03-11 23:10:05,279 | INFO     | **************************************
[2026-03-12 00:11:02] 2026-03-11 23:10:05,782 | INFO     | executing command: df -mP /tmp/job_11295191/atlas/pilot/slots/0
[2026-03-12 00:11:02] 2026-03-11 23:10:05,789 | INFO     | sufficient remaining disk space (225085227008 B)
[2026-03-12 00:11:02] 2026-03-11 23:10:05,789 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 00:11:02] 2026-03-11 23:10:05,789 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 00:11:02] 2026-03-11 23:10:05,789 | INFO     | update_server=False
[2026-03-12 00:11:02] 2026-03-11 23:10:05,789 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 00:11:02] 2026-03-11 23:10:05,790 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 00:11:02] 2026-03-11 23:10:05,790 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 00:11:02] 2026-03-11 23:10:05,790 | INFO     | aborting loop
[2026-03-12 00:11:02] 2026-03-11 23:10:06,056 | INFO     | all data control threads have been joined
[2026-03-12 00:11:02] 2026-03-11 23:10:06,554 | INFO     | all payload control threads have been joined
[2026-03-12 00:11:02] 2026-03-11 23:10:06,795 | INFO     | [job] retrieve thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:06,795 | INFO     | [job] queue monitor thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:06,795 | INFO     | [job] job monitor thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:06,828 | INFO     | all job control threads have been joined
[2026-03-12 00:11:02] 2026-03-11 23:10:06,921 | INFO     | [payload] failed_post thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:07,062 | INFO     | [data] control thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:07,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 00:11:02] 2026-03-11 23:10:07,276 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:07,356 | INFO     | [job] validate thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:07,511 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:07,523 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:07,559 | INFO     | [payload] control thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:07,684 | INFO     | [data] copytool_in thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:07,824 | INFO     | [payload] validate_post thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:07,833 | INFO     | [job] control thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:08,728 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 00:11:02] 2026-03-11 23:10:09,207 | INFO     | [data] copytool_out thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:12,734 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:16,687 | INFO     | job.realtimelogging is not enabled
[2026-03-12 00:11:02] 2026-03-11 23:10:17,692 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 00:11:02] 2026-03-11 23:10:36,923 | INFO     | PID=14735 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 00:11:02] 2026-03-11 23:10:36,923 | INFO     | .. there are 5 such processes running
[2026-03-12 00:11:02] 2026-03-11 23:10:36,924 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 00:11:02] 2026-03-11 23:10:36,924 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 00:11:02] 2026-03-11 23:10:36,924 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 00:11:02] 2026-03-11 23:10:55,463 | INFO     | [monitor] cgroup control has ended
[2026-03-12 00:11:02] 2026-03-11 23:10:57,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-03-12 00:11:02] 2026-03-11 23:10:58,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 00:11:02] 2026-03-11 23:10:58,029 | INFO     | [monitor] control thread has ended
[2026-03-12 00:11:02] 2026-03-11 23:11:02,310 | INFO     | all workflow threads have been joined
[2026-03-12 00:11:02] 2026-03-11 23:11:02,310 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 00:11:02] 2026-03-11 23:11:02,310 | INFO     | traces error code: 0
[2026-03-12 00:11:02] 2026-03-11 23:11:02,310 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 00:11:02] 2026-03-11 23:11:02,375 [wrapper] ==== pilot stdout END ====
[2026-03-12 00:11:02] 2026-03-11 23:11:02,376 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 00:11:02] 2026-03-11 23:11:02,378 [wrapper] pilotpid: 14735
[2026-03-12 00:11:02] 2026-03-11 23:11:02,379 [wrapper] Pilot exit status: 0
[2026-03-12 00:11:02] 2026-03-11 23:11:02,383 [wrapper] pandaids: 7036369690
[2026-03-12 00:11:02] 2026-03-11 23:11:02,411 [wrapper] cleanup supervisor_pilot 29841 14736
[2026-03-12 00:11:02] 2026-03-11 23:11:02,412 [wrapper] Test setup, not cleaning
[2026-03-12 00:11:02] 2026-03-11 23:11:02,413 [wrapper] apfmon messages muted
[2026-03-12 00:11:02] 2026-03-11 23:11:02,415 [wrapper] ==== wrapper stdout END ====
[2026-03-12 00:11:02] 2026-03-11 23:11:02,416 [wrapper] ==== wrapper stderr END ====
[2026-03-12 00:11:02]  *** Error codes and diagnostics ***
[2026-03-12 00:11:02]     "exeErrorCode": 0,
[2026-03-12 00:11:02]     "exeErrorDiag": "",
[2026-03-12 00:11:02]     "pilotErrorCode": 0,
[2026-03-12 00:11:02]     "pilotErrorDiag": "",
[2026-03-12 00:11:02]  *** Listing of results directory ***
[2026-03-12 00:11:02] total 335368
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user    584627 Mar  3 18:25 pilot3.tar.gz
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user      5111 Mar  3 18:28 queuedata.json
[2026-03-12 00:11:02] -rwx------ 1 mf493845 unix-user     36322 Mar  3 18:28 runpilot2-wrapper.sh
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user       100 Mar 11 22:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 00:11:02] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 11 22:44 run_atlas
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user       105 Mar 11 22:44 job.xml
[2026-03-12 00:11:02] -rw-r--r-- 2 mf493845 unix-user 191542090 Mar 11 23:33 EVNT.48700936._000116.pool.root.1
[2026-03-12 00:11:02] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 11 23:33 start_atlas.sh
[2026-03-12 00:11:02] drwxrwx--x 2 mf493845 unix-user       100 Mar 11 23:33 shared
[2026-03-12 00:11:02] -rw-r--r-- 2 mf493845 unix-user    597936 Mar 11 23:33 input.tar.gz
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user      6391 Mar 11 23:33 init_data.xml
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user         0 Mar 11 23:33 boinc_setup_complete
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user      8192 Mar 11 23:33 boinc_mmap_file
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user         0 Mar 11 23:33 boinc_lockfile
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user      2500 Mar 11 23:33 pandaJob.out
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user   1006243 Mar 11 23:33 agis_schedconf.cvmfs.json
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user   1511578 Mar 11 23:33 agis_ddmendpoints.agis.ALL.json
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user       416 Mar 11 23:33 workernode_map.json
[2026-03-12 00:11:02] drwx------ 5 mf493845 unix-user       440 Mar 11 23:33 pilot3
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user 146656429 Mar 12 00:09 HITS.48700938._002954.pool.root.1
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user      1023 Mar 12 00:09 memory_monitor_summary.json
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user    294664 Mar 12 00:09 log.48700938._002954.job.log.tgz.1
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user      6300 Mar 12 00:10 heartbeat.json
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user        95 Mar 12 00:10 pilot_heartbeat.json
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user      4903 Mar 12 00:11 pilotlog.txt
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user    359105 Mar 12 00:11 log.48700938._002954.job.log.1
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user       357 Mar 12 00:11 output.list
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user       620 Mar 12 00:11 runtime_log
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user    675840 Mar 12 00:11 result.tar.gz
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user       641 Mar 12 00:11 Zv3NDm6iiH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmdAFLDmliPXPo.diag
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user      9219 Mar 12 00:11 runtime_log.err
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user     22235 Mar 12 00:11 stderr.txt
[2026-03-12 00:11:02] HITS file was successfully produced:
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user 146656429 Mar 12 00:09 shared/HITS.pool.root.1
[2026-03-12 00:11:02]  *** Contents of shared directory: ***
[2026-03-12 00:11:02] total 331536
[2026-03-12 00:11:02] -rw-r--r-- 2 mf493845 unix-user 191542090 Mar 11 23:33 ATLAS.root_0
[2026-03-12 00:11:02] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 11 23:33 start_atlas.sh
[2026-03-12 00:11:02] -rw-r--r-- 2 mf493845 unix-user    597936 Mar 11 23:33 input.tar.gz
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user 146656429 Mar 12 00:09 HITS.pool.root.1
[2026-03-12 00:11:02] -rw------- 1 mf493845 unix-user    675840 Mar 12 00:11 result.tar.gz
00:11:03 (10880): run_atlas exited; CPU time 15608.448184
00:11:03 (10880): called boinc_finish(0)

</stderr_txt>
]]>

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