Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:29:48 (18547): wrapper (7.7.26015): starting
15:29:48 (18547): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 15:29:48] Arguments: --nthreads 8
[2026-03-12 15:29:48] Threads: 8
[2026-03-12 15:29:48] Checking for CVMFS
[2026-03-12 15:29:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 15:29:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 15:29:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 15:29:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 15:29:53] 2.11.2.0 4684 124817 133556 157203 2 53 15463329 25165824 4776 130560 155 40323491 99.851 23831760 870 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-12 15:29:53] CVMFS is ok
[2026-03-12 15:29:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 15:29:53] Checking for apptainer binary...
[2026-03-12 15:29:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 15:29:53] Running /usr/bin/apptainer --version
[2026-03-12 15:29:53] apptainer version 1.3.2-1.el7
[2026-03-12 15:29:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 15:30:06] cg-vwn471.simple-grid.lan
[2026-03-12 15:30:06] apptainer works
[2026-03-12 15:30:06] Set ATHENA_PROC_NUMBER=8
[2026-03-12 15:30:06] Set ATHENA_CORE_NUMBER=8
[2026-03-12 15:30:06] Starting ATLAS job with PandaID=7050113935
[2026-03-12 15:30:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 20:28:54]  *** The last 200 lines of the pilot log: ***
[2026-03-12 20:28:54] 2026-03-12 19:28:06,729 | INFO     | job 7050113935 has finished - writing final server update
[2026-03-12 20:28:54] 2026-03-12 19:28:06,729 | INFO     | total number of processed events: 400 (read)
[2026-03-12 20:28:54] 2026-03-12 19:28:06,731 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-7050113935/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 20:28:54] 2026-03-12 19:28:06,731 | INFO     | extracted standard info from prmon json
[2026-03-12 20:28:54] 2026-03-12 19:28:06,732 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 20:28:54] 2026-03-12 19:28:06,732 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 20:28:54] 2026-03-12 19:28:06,732 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 20:28:54] 2026-03-12 19:28:06,732 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 20:28:54] 2026-03-12 19:28:06,738 | INFO     | fitting pss+swap vs Time
[2026-03-12 20:28:54] 2026-03-12 19:28:06,738 | INFO     | sum of square deviations: 7102775035.0
[2026-03-12 20:28:54] 2026-03-12 19:28:06,741 | INFO     | sum of deviations: 97680728497.99998
[2026-03-12 20:28:54] 2026-03-12 19:28:06,741 | INFO     | mean x: 1773334997.5
[2026-03-12 20:28:54] 2026-03-12 19:28:06,741 | INFO     | mean y: 2455643.6619718308
[2026-03-12 20:28:54] 2026-03-12 19:28:06,741 | INFO     | intersect: -24385287678.2408
[2026-03-12 20:28:54] 2026-03-12 19:28:06,742 | INFO     | chi2: 6.586934440470405
[2026-03-12 20:28:54] 2026-03-12 19:28:06,742 | INFO     | sum of square deviations: 6734191380.0
[2026-03-12 20:28:54] 2026-03-12 19:28:06,754 | INFO     | sum of deviations: 114494296479.99998
[2026-03-12 20:28:54] 2026-03-12 19:28:06,754 | INFO     | mean x: 1773334845.0
[2026-03-12 20:28:54] 2026-03-12 19:28:06,754 | INFO     | mean y: 2462488.7419354836
[2026-03-12 20:28:54] 2026-03-12 19:28:06,754 | INFO     | intersect: -30147664533.894722
[2026-03-12 20:28:54] 2026-03-12 19:28:06,755 | INFO     | chi2: 5.864888008398769
[2026-03-12 20:28:54] 2026-03-12 19:28:06,755 | INFO     | current chi2=5.864888008398769 (change=10.961797761874658 %)
[2026-03-12 20:28:54] 2026-03-12 19:28:06,755 | INFO     | right removable region: 278
[2026-03-12 20:28:54] 2026-03-12 19:28:06,755 | INFO     | sum of square deviations: 6734191380.0
[2026-03-12 20:28:54] 2026-03-12 19:28:06,758 | INFO     | sum of deviations: -3483344.0
[2026-03-12 20:28:54] 2026-03-12 19:28:06,758 | INFO     | mean x: 1773335150.0
[2026-03-12 20:28:54] 2026-03-12 19:28:06,758 | INFO     | mean y: 2496031.100358423
[2026-03-12 20:28:54] 2026-03-12 19:28:06,758 | INFO     | intersect: 3413310.697295212
[2026-03-12 20:28:54] 2026-03-12 19:28:06,759 | INFO     | chi2: 1.9823980940029253
[2026-03-12 20:28:54] 2026-03-12 19:28:06,759 | INFO     | current chi2=1.9823980940029253 (change=69.90408646208793 %)
[2026-03-12 20:28:54] 2026-03-12 19:28:06,759 | INFO     | sum of square deviations: 6378584712.5
[2026-03-12 20:28:54] 2026-03-12 19:28:06,762 | INFO     | sum of deviations: -38573746713.5
[2026-03-12 20:28:54] 2026-03-12 19:28:06,762 | INFO     | mean x: 1773335302.5
[2026-03-12 20:28:54] 2026-03-12 19:28:06,762 | INFO     | mean y: 2512451.6678832117
[2026-03-12 20:28:54] 2026-03-12 19:28:06,762 | INFO     | intersect: 10726550757.954296
[2026-03-12 20:28:54] 2026-03-12 19:28:06,763 | INFO     | chi2: 0.9150720070464274
[2026-03-12 20:28:54] 2026-03-12 19:28:06,763 | INFO     | current chi2=0.9150720070464274 (change=53.840148968329416 %)
[2026-03-12 20:28:54] 2026-03-12 19:28:06,763 | INFO     | sum of square deviations: 6035722470.0
[2026-03-12 20:28:54] 2026-03-12 19:28:06,765 | INFO     | sum of deviations: -35335460118.0
[2026-03-12 20:28:54] 2026-03-12 19:28:06,766 | INFO     | mean x: 1773335455.0
[2026-03-12 20:28:54] 2026-03-12 19:28:06,766 | INFO     | mean y: 2510987.6096654274
[2026-03-12 20:28:54] 2026-03-12 19:28:06,766 | INFO     | intersect: 10384304477.526024
[2026-03-12 20:28:54] 2026-03-12 19:28:06,767 | INFO     | chi2: 0.8990987227836734
[2026-03-12 20:28:54] 2026-03-12 19:28:06,767 | INFO     | current chi2=0.8990987227836734 (change=1.7455767567746818 %)
[2026-03-12 20:28:54] 2026-03-12 19:28:06,767 | INFO     | left removable region: 30
[2026-03-12 20:28:54] 2026-03-12 19:28:06,767 | INFO     | sum of square deviations: 4729621702.0
[2026-03-12 20:28:54] 2026-03-12 19:28:06,769 | INFO     | sum of deviations: 8066468681.499999
[2026-03-12 20:28:54] 2026-03-12 19:28:06,769 | INFO     | mean x: 1773335729.5
[2026-03-12 20:28:54] 2026-03-12 19:28:06,770 | INFO     | mean y: 2506656.1572580645
[2026-03-12 20:28:54] 2026-03-12 19:28:06,770 | INFO     | intersect: -3021954500.587642
[2026-03-12 20:28:54] 2026-03-12 19:28:06,770 | INFO     | chi2: 0.0008506816859177233
[2026-03-12 20:28:54] 2026-03-12 19:28:06,770 | INFO     | current memory leak: 1.71 B/s (using 248 data points, chi2=0.00)
[2026-03-12 20:28:54] 2026-03-12 19:28:06,771 | INFO     | could have reported an average CPU frequency of 2249 MHz (13 samples)
[2026-03-12 20:28:54] 2026-03-12 19:28:06,771 | INFO     | ..............................
[2026-03-12 20:28:54] 2026-03-12 19:28:06,771 | INFO     | . Timing measurements:
[2026-03-12 20:28:54] 2026-03-12 19:28:06,771 | INFO     | . get job = 0 s
[2026-03-12 20:28:54] 2026-03-12 19:28:06,771 | INFO     | . initial setup = 94 s
[2026-03-12 20:28:54] 2026-03-12 19:28:06,771 | INFO     | . payload setup = 128 s
[2026-03-12 20:28:54] 2026-03-12 19:28:06,772 | INFO     | . stage-in = 0 s
[2026-03-12 20:28:54] 2026-03-12 19:28:06,772 | INFO     | . payload execution = 17421 s
[2026-03-12 20:28:54] 2026-03-12 19:28:06,772 | INFO     | . stage-out = 4 s
[2026-03-12 20:28:54] 2026-03-12 19:28:06,772 | INFO     | . log creation = 1 s
[2026-03-12 20:28:54] 2026-03-12 19:28:06,772 | INFO     | ..............................
[2026-03-12 20:28:54] 2026-03-12 19:28:07,029 | INFO     | 
[2026-03-12 20:28:54] 2026-03-12 19:28:07,029 | INFO     | job summary report
[2026-03-12 20:28:54] 2026-03-12 19:28:07,029 | INFO     | --------------------------------------------------
[2026-03-12 20:28:54] 2026-03-12 19:28:07,029 | INFO     | PanDA job id: 7050113935
[2026-03-12 20:28:54] 2026-03-12 19:28:07,029 | INFO     | task id: 48967011
[2026-03-12 20:28:54] 2026-03-12 19:28:07,029 | INFO     | errors: (none)
[2026-03-12 20:28:54] 2026-03-12 19:28:07,029 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | pilot state: finished 
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | transexitcode: 0
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | exeerrorcode: 0
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | exeerrordiag: 
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | exitcode: 0
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | exitmsg: OK
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | cpuconsumptiontime: 67978 s
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | nevents: 400
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | neventsw: 0
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | pid: 27141
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | pgrp: 27141
[2026-03-12 20:28:54] 2026-03-12 19:28:07,030 | INFO     | corecount: 8
[2026-03-12 20:28:54] 2026-03-12 19:28:07,031 | INFO     | event service: False
[2026-03-12 20:28:54] 2026-03-12 19:28:07,031 | INFO     | sizes: {0: 2279810, 1: 2252272, 2: 2280299, 12: 2280299, 17553: 2312314, 17554: 2312313, 17558: 2321553, 17560: 2321691}
[2026-03-12 20:28:54] 2026-03-12 19:28:07,031 | INFO     | --------------------------------------------------
[2026-03-12 20:28:54] 2026-03-12 19:28:07,031 | INFO     | 
[2026-03-12 20:28:54] 2026-03-12 19:28:07,031 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2026-03-12 20:28:54] 2026-03-12 19:28:07,556 | INFO     | time since job start (17572s) is within the limit (345600.0s)
[2026-03-12 20:28:54] 2026-03-12 19:28:07,739 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,739 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,739 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,739 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,739 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,739 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,740 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,740 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,740 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,740 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,740 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,740 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,740 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,740 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,740 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,741 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,741 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 20:28:54] 2026-03-12 19:28:07,741 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,741 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 20:28:54] 2026-03-12 19:28:07,741 | INFO     | job 7050113935 has completed (purged errors)
[2026-03-12 20:28:54] 2026-03-12 19:28:07,741 | INFO     | overall cleanup function is called
[2026-03-12 20:28:54] 2026-03-12 19:28:08,751 | INFO     | --- collectZombieJob: --- 10, [27141]
[2026-03-12 20:28:54] 2026-03-12 19:28:08,751 | INFO     | zombie collector waiting for pid 27141
[2026-03-12 20:28:54] 2026-03-12 19:28:08,751 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 20:28:54] 2026-03-12 19:28:08,751 | INFO     | collected zombie processes
[2026-03-12 20:28:54] 2026-03-12 19:28:08,751 | INFO     | will attempt to kill all subprocesses of pid=27141
[2026-03-12 20:28:54] 2026-03-12 19:28:08,855 | INFO     | process IDs to be killed: [27141] (in reverse order)
[2026-03-12 20:28:54] 2026-03-12 19:28:08,958 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 20:28:54] 2026-03-12 19:28:08,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 20:28:54] 2026-03-12 19:28:08,962 | INFO     | did not find any defunct processes belonging to 27141
[2026-03-12 20:28:54] 2026-03-12 19:28:08,965 | INFO     | did not find any defunct processes belonging to 27141
[2026-03-12 20:28:54] 2026-03-12 19:28:08,965 | INFO     | ready for new job
[2026-03-12 20:28:54] 2026-03-12 19:28:08,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 20:28:54] 2026-03-12 19:28:08,967 | INFO     | **************************************
[2026-03-12 20:28:54] 2026-03-12 19:28:08,968 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 20:28:54] 2026-03-12 19:28:08,968 | INFO     | **************************************
[2026-03-12 20:28:54] 2026-03-12 19:28:08,968 | INFO     | 
[2026-03-12 20:28:54] 2026-03-12 19:28:08,968 | INFO     | pilot is running in a VM
[2026-03-12 20:28:54] 2026-03-12 19:28:08,969 | INFO     | architecture information:
[2026-03-12 20:28:54] 2026-03-12 19:28:08,969 | INFO     | executing command: cat /etc/os-release
[2026-03-12 20:28:54] 2026-03-12 19:28:08,989 | INFO     | cat /etc/os-release:
[2026-03-12 20:28:54] NAME="CentOS Linux"
[2026-03-12 20:28:54] VERSION="7 (Core)"
[2026-03-12 20:28:54] ID="centos"
[2026-03-12 20:28:54] ID_LIKE="rhel fedora"
[2026-03-12 20:28:54] VERSION_ID="7"
[2026-03-12 20:28:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 20:28:54] ANSI_COLOR="0;31"
[2026-03-12 20:28:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 20:28:54] HOME_URL="https://www.centos.org/"
[2026-03-12 20:28:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 20:28:54] 
[2026-03-12 20:28:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 20:28:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 20:28:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 20:28:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 20:28:54] 
[2026-03-12 20:28:54] 2026-03-12 19:28:08,989 | INFO     | **************************************
[2026-03-12 20:28:54] 2026-03-12 19:28:09,493 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2026-03-12 20:28:54] 2026-03-12 19:28:09,652 | INFO     | sufficient remaining disk space (495199453184 B)
[2026-03-12 20:28:54] 2026-03-12 19:28:09,653 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 20:28:54] 2026-03-12 19:28:09,653 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 20:28:54] 2026-03-12 19:28:09,653 | INFO     | update_server=False
[2026-03-12 20:28:54] 2026-03-12 19:28:09,653 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 20:28:54] 2026-03-12 19:28:09,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 20:28:54] 2026-03-12 19:28:09,656 | INFO     | aborting loop
[2026-03-12 20:28:54] 2026-03-12 19:28:09,737 | INFO     | all job control threads have been joined
[2026-03-12 20:28:54] 2026-03-12 19:28:10,193 | INFO     | all payload control threads have been joined
[2026-03-12 20:28:54] 2026-03-12 19:28:10,511 | INFO     | all data control threads have been joined
[2026-03-12 20:28:54] 2026-03-12 19:28:10,659 | INFO     | [job] retrieve thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:10,662 | INFO     | [job] job monitor thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:10,743 | INFO     | [job] control thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:10,823 | INFO     | [job] validate thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:10,859 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:10,959 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:10,986 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:10,989 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 20:28:54] 2026-03-12 19:28:11,199 | INFO     | [payload] control thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:11,517 | INFO     | [data] control thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:11,706 | INFO     | [payload] validate_post thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:11,765 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 20:28:54] 2026-03-12 19:28:11,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 20:28:54] 2026-03-12 19:28:11,935 | INFO     | [payload] failed_post thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:11,938 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:12,070 | INFO     | [data] copytool_in thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:12,915 | INFO     | [job] queue monitor thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:12,996 | INFO     | [data] copytool_out thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:15,774 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 20:28:54] 2026-03-12 19:28:40,725 | INFO     | PID=22618 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 20:28:54] 2026-03-12 19:28:40,725 | INFO     | .. there are 9 such processes running
[2026-03-12 20:28:54] 2026-03-12 19:28:40,726 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 20:28:54] 2026-03-12 19:28:40,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 20:28:54] 2026-03-12 19:28:40,727 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 20:28:54] 2026-03-12 19:28:45,406 | INFO     | [monitor] cgroup control has ended
[2026-03-12 20:28:54] 2026-03-12 19:28:45,949 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139919642441536)>', '<ExcThread(monitor, started 139918760212224)>']
[2026-03-12 20:28:54] 2026-03-12 19:28:46,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 20:28:54] 2026-03-12 19:28:46,763 | INFO     | [monitor] control thread has ended
[2026-03-12 20:28:54] 2026-03-12 19:28:50,975 | INFO     | all workflow threads have been joined
[2026-03-12 20:28:54] 2026-03-12 19:28:50,975 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 20:28:54] 2026-03-12 19:28:50,975 | INFO     | traces error code: 0
[2026-03-12 20:28:54] 2026-03-12 19:28:50,975 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 20:28:54] 2026-03-12 19:28:51,253 [wrapper] ==== pilot stdout END ====
[2026-03-12 20:28:54] 2026-03-12 19:28:51,317 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 20:28:54] 2026-03-12 19:28:51,384 [wrapper] pilotpid: 22618
[2026-03-12 20:28:54] 2026-03-12 19:28:51,439 [wrapper] Pilot exit status: 0
[2026-03-12 20:28:54] 2026-03-12 19:28:51,833 [wrapper] pandaids: 7050113935
[2026-03-12 20:28:54] 2026-03-12 19:28:52,662 [wrapper] cleanup supervisor_pilot  3636 22619
[2026-03-12 20:28:54] 2026-03-12 19:28:52,723 [wrapper] Test setup, not cleaning
[2026-03-12 20:28:54] 2026-03-12 19:28:52,804 [wrapper] apfmon messages muted
[2026-03-12 20:28:54] 2026-03-12 19:28:52,863 [wrapper] ==== wrapper stdout END ====
[2026-03-12 20:28:54] 2026-03-12 19:28:52,948 [wrapper] ==== wrapper stderr END ====
[2026-03-12 20:28:54]  *** Error codes and diagnostics ***
[2026-03-12 20:28:54]     "exeErrorCode": 0,
[2026-03-12 20:28:54]     "exeErrorDiag": "",
[2026-03-12 20:28:54]     "pilotErrorCode": 0,
[2026-03-12 20:28:54]     "pilotErrorDiag": "",
[2026-03-12 20:28:54]  *** Listing of results directory ***
[2026-03-12 20:28:54] total 426256
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc      5111 Mar 11 20:56 queuedata.json
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc    585013 Mar 11 20:56 pilot3.tar.gz
[2026-03-12 20:28:54] -rwx------. 1 boinc boinc     36322 Mar 11 20:57 runpilot2-wrapper.sh
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc       100 Mar 12 15:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 20:28:54] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 15:29 run_atlas
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc       105 Mar 12 15:29 job.xml
[2026-03-12 20:28:54] -rw-r--r--. 2 boinc boinc 219072882 Mar 12 15:29 EVNT.48967008._000547.pool.root.1
[2026-03-12 20:28:54] drwxrwx--x. 2 boinc boinc        68 Mar 12 15:29 shared
[2026-03-12 20:28:54] -rw-r--r--. 2 boinc boinc    597527 Mar 12 15:29 input.tar.gz
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc      6392 Mar 12 15:29 init_data.xml
[2026-03-12 20:28:54] -rw-r--r--. 2 boinc boinc     15845 Mar 12 15:29 start_atlas.sh
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc         0 Mar 12 15:29 boinc_lockfile
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc      2563 Mar 12 15:30 pandaJob.out
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc       415 Mar 12 15:35 workernode_map.json
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc   1006554 Mar 12 15:35 agis_schedconf.cvmfs.json
[2026-03-12 20:28:54] drwx------. 5 boinc boinc      4096 Mar 12 15:35 pilot3
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc 207584264 Mar 12 20:26 HITS.48967011._013913.pool.root.1
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc       531 Mar 12 20:27 boinc_task_state.xml
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc      1016 Mar 12 20:27 memory_monitor_summary.json
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc   1511578 Mar 12 20:28 agis_ddmendpoints.agis.ALL.json
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc    514530 Mar 12 20:28 log.48967011._013913.job.log.tgz.1
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc      6318 Mar 12 20:28 heartbeat.json
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc      8192 Mar 12 20:28 boinc_mmap_file
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc        28 Mar 12 20:28 wrapper_checkpoint.txt
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc        95 Mar 12 20:28 pilot_heartbeat.json
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc      4881 Mar 12 20:28 pilotlog.txt
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc   2442621 Mar 12 20:28 log.48967011._013913.job.log.1
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc       357 Mar 12 20:28 output.list
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc       620 Mar 12 20:28 runtime_log
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc   2969600 Mar 12 20:28 result.tar.gz
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc      8832 Mar 12 20:28 runtime_log.err
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc       656 Mar 12 20:28 p6HLDm6qeK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm9pkLDmVwMEQn.diag
[2026-03-12 20:28:54] -rw-r--r--. 1 boinc boinc     20732 Mar 12 20:28 stderr.txt
[2026-03-12 20:28:54] HITS file was successfully produced:
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc 207584264 Mar 12 20:26 shared/HITS.pool.root.1
[2026-03-12 20:28:54]  *** Contents of shared directory: ***
[2026-03-12 20:28:54] total 420160
[2026-03-12 20:28:54] -rw-r--r--. 2 boinc boinc 219072882 Mar 12 15:29 ATLAS.root_0
[2026-03-12 20:28:54] -rw-r--r--. 2 boinc boinc    597527 Mar 12 15:29 input.tar.gz
[2026-03-12 20:28:54] -rw-r--r--. 2 boinc boinc     15845 Mar 12 15:29 start_atlas.sh
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc 207584264 Mar 12 20:26 HITS.pool.root.1
[2026-03-12 20:28:54] -rw-------. 1 boinc boinc   2969600 Mar 12 20:28 result.tar.gz
20:28:55 (18547): run_atlas exited; CPU time 68233.875154
20:28:55 (18547): called boinc_finish(0)

</stderr_txt>
]]>

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