Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:02:17 (1278): wrapper (7.7.26015): starting
10:02:17 (1278): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 10:02:17] Arguments: --nthreads 8
[2026-03-12 10:02:17] Threads: 8
[2026-03-12 10:02:17] Checking for CVMFS
[2026-03-12 10:02:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 10:02:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 10:02:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 10:02:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 10:02:23] 2.11.2.0 29064 124471 137744 157193 1 53 16264624 25165825 4884 130560 160 38750676 99.845 24516593 885 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-12 10:02:23] CVMFS is ok
[2026-03-12 10:02:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 10:02:23] Checking for apptainer binary...
[2026-03-12 10:02:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 10:02:23] Running /usr/bin/apptainer --version
[2026-03-12 10:02:23] apptainer version 1.3.2-1.el7
[2026-03-12 10:02:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 10:02:49] cg-vwn462.simple-grid.lan
[2026-03-12 10:02:49] apptainer works
[2026-03-12 10:02:49] Set ATHENA_PROC_NUMBER=8
[2026-03-12 10:02:49] Set ATHENA_CORE_NUMBER=8
[2026-03-12 10:02:49] Starting ATLAS job with PandaID=7049920706
[2026-03-12 10:02:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 15:05:37]  *** The last 200 lines of the pilot log: ***
[2026-03-12 15:05:37] 2026-03-12 14:04:43,187 | INFO     | job 7049920706 has finished - writing final server update
[2026-03-12 15:05:37] 2026-03-12 14:04:43,187 | INFO     | total number of processed events: 400 (read)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,189 | INFO     | using path: /var/lib/boinc/slots/21/PanDA_Pilot-7049920706/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,190 | INFO     | extracted standard info from prmon json
[2026-03-12 15:05:37] 2026-03-12 14:04:43,190 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 15:05:37] 2026-03-12 14:04:43,190 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 15:05:37] 2026-03-12 14:04:43,190 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 15:05:37] 2026-03-12 14:04:43,190 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 15:05:37] 2026-03-12 14:04:43,196 | INFO     | fitting pss+swap vs Time
[2026-03-12 15:05:37] 2026-03-12 14:04:43,197 | INFO     | sum of square deviations: 7407141672.0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,199 | INFO     | sum of deviations: 63017558621.5
[2026-03-12 15:05:37] 2026-03-12 14:04:43,199 | INFO     | mean x: 1773315470.5
[2026-03-12 15:05:37] 2026-03-12 14:04:43,199 | INFO     | mean y: 2469032.0243055555
[2026-03-12 15:05:37] 2026-03-12 14:04:43,200 | INFO     | intersect: -15084323764.052053
[2026-03-12 15:05:37] 2026-03-12 14:04:43,200 | INFO     | chi2: 6.2211586485608485
[2026-03-12 15:05:37] 2026-03-12 14:04:43,207 | INFO     | sum of square deviations: 7028008982.0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,209 | INFO     | sum of deviations: 80982448137.00002
[2026-03-12 15:05:37] 2026-03-12 14:04:43,210 | INFO     | mean x: 1773315318.0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,210 | INFO     | mean y: 2476149.883392226
[2026-03-12 15:05:37] 2026-03-12 14:04:43,210 | INFO     | intersect: -20431108402.766895
[2026-03-12 15:05:37] 2026-03-12 14:04:43,210 | INFO     | chi2: 5.491123803548536
[2026-03-12 15:05:37] 2026-03-12 14:04:43,210 | INFO     | current chi2=5.491123803548536 (change=11.734708697409488 %)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,211 | INFO     | right removable region: 282
[2026-03-12 15:05:37] 2026-03-12 14:04:43,211 | INFO     | sum of square deviations: 7028008982.0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,214 | INFO     | sum of deviations: -34284394067.000008
[2026-03-12 15:05:37] 2026-03-12 14:04:43,214 | INFO     | mean x: 1773315623.0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,214 | INFO     | mean y: 2508142.409893993
[2026-03-12 15:05:37] 2026-03-12 14:04:43,214 | INFO     | intersect: 8653187414.42162
[2026-03-12 15:05:37] 2026-03-12 14:04:43,215 | INFO     | chi2: 1.832539115622743
[2026-03-12 15:05:37] 2026-03-12 14:04:43,215 | INFO     | current chi2=1.832539115622743 (change=70.54344344607468 %)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,215 | INFO     | sum of square deviations: 6662039329.5
[2026-03-12 15:05:37] 2026-03-12 14:04:43,218 | INFO     | sum of deviations: -71828151815.5
[2026-03-12 15:05:37] 2026-03-12 14:04:43,218 | INFO     | mean x: 1773315775.5
[2026-03-12 15:05:37] 2026-03-12 14:04:43,218 | INFO     | mean y: 2523688.694244604
[2026-03-12 15:05:37] 2026-03-12 14:04:43,218 | INFO     | intersect: 19121893665.303913
[2026-03-12 15:05:37] 2026-03-12 14:04:43,219 | INFO     | chi2: 0.9215140693626576
[2026-03-12 15:05:37] 2026-03-12 14:04:43,219 | INFO     | current chi2=0.9215140693626576 (change=49.7138117540534 %)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,219 | INFO     | sum of square deviations: 6309000152.0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,222 | INFO     | sum of deviations: -73683278356.00002
[2026-03-12 15:05:37] 2026-03-12 14:04:43,222 | INFO     | mean x: 1773315928.0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,222 | INFO     | mean y: 2524467.827838828
[2026-03-12 15:05:37] 2026-03-12 14:04:43,222 | INFO     | intersect: 20713212055.072723
[2026-03-12 15:05:37] 2026-03-12 14:04:43,223 | INFO     | chi2: 0.8973509172817731
[2026-03-12 15:05:37] 2026-03-12 14:04:43,223 | INFO     | current chi2=0.8973509172817731 (change=2.6221142882383046 %)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,223 | INFO     | left removable region: 30
[2026-03-12 15:05:37] 2026-03-12 14:04:43,230 | INFO     | sum of square deviations: 4962187923.0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,232 | INFO     | sum of deviations: -40781313533.50002
[2026-03-12 15:05:37] 2026-03-12 14:04:43,232 | INFO     | mean x: 1773316202.5
[2026-03-12 15:05:37] 2026-03-12 14:04:43,233 | INFO     | mean y: 2526593.9007936507
[2026-03-12 15:05:37] 2026-03-12 14:04:43,233 | INFO     | intersect: 14576372883.153494
[2026-03-12 15:05:37] 2026-03-12 14:04:43,233 | INFO     | chi2: 0.10297554704888665
[2026-03-12 15:05:37] 2026-03-12 14:04:43,233 | INFO     | current memory leak: -8.22 B/s (using 252 data points, chi2=0.10)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,234 | INFO     | could have reported an average CPU frequency of 2250 MHz (13 samples)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,234 | INFO     | ..............................
[2026-03-12 15:05:37] 2026-03-12 14:04:43,234 | INFO     | . Timing measurements:
[2026-03-12 15:05:37] 2026-03-12 14:04:43,235 | INFO     | . get job = 0 s
[2026-03-12 15:05:37] 2026-03-12 14:04:43,235 | INFO     | . initial setup = 101 s
[2026-03-12 15:05:37] 2026-03-12 14:04:43,235 | INFO     | . payload setup = 132 s
[2026-03-12 15:05:37] 2026-03-12 14:04:43,235 | INFO     | . stage-in = 0 s
[2026-03-12 15:05:37] 2026-03-12 14:04:43,235 | INFO     | . payload execution = 17659 s
[2026-03-12 15:05:37] 2026-03-12 14:04:43,235 | INFO     | . stage-out = 3 s
[2026-03-12 15:05:37] 2026-03-12 14:04:43,235 | INFO     | . log creation = 1 s
[2026-03-12 15:05:37] 2026-03-12 14:04:43,235 | INFO     | ..............................
[2026-03-12 15:05:37] 2026-03-12 14:04:43,390 | INFO     | 
[2026-03-12 15:05:37] 2026-03-12 14:04:43,390 | INFO     | job summary report
[2026-03-12 15:05:37] 2026-03-12 14:04:43,390 | INFO     | --------------------------------------------------
[2026-03-12 15:05:37] 2026-03-12 14:04:43,390 | INFO     | PanDA job id: 7049920706
[2026-03-12 15:05:37] 2026-03-12 14:04:43,390 | INFO     | task id: 48967011
[2026-03-12 15:05:37] 2026-03-12 14:04:43,390 | INFO     | errors: (none)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,390 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 15:05:37] 2026-03-12 14:04:43,391 | INFO     | pilot state: finished 
[2026-03-12 15:05:37] 2026-03-12 14:04:43,391 | INFO     | transexitcode: 0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,391 | INFO     | exeerrorcode: 0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,391 | INFO     | exeerrordiag: 
[2026-03-12 15:05:37] 2026-03-12 14:04:43,391 | INFO     | exitcode: 0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,391 | INFO     | exitmsg: OK
[2026-03-12 15:05:37] 2026-03-12 14:04:43,391 | INFO     | cpuconsumptiontime: 68611 s
[2026-03-12 15:05:37] 2026-03-12 14:04:43,391 | INFO     | nevents: 400
[2026-03-12 15:05:37] 2026-03-12 14:04:43,391 | INFO     | neventsw: 0
[2026-03-12 15:05:37] 2026-03-12 14:04:43,391 | INFO     | pid: 9884
[2026-03-12 15:05:37] 2026-03-12 14:04:43,392 | INFO     | pgrp: 9884
[2026-03-12 15:05:37] 2026-03-12 14:04:43,392 | INFO     | corecount: 8
[2026-03-12 15:05:37] 2026-03-12 14:04:43,392 | INFO     | event service: False
[2026-03-12 15:05:37] 2026-03-12 14:04:43,392 | INFO     | sizes: {0: 2279810, 1: 2280271, 2: 2280271, 17795: 2312477, 17796: 2312476, 17800: 2321532, 17803: 2321744, 17804: 2321938}
[2026-03-12 15:05:37] 2026-03-12 14:04:43,392 | INFO     | --------------------------------------------------
[2026-03-12 15:05:37] 2026-03-12 14:04:43,392 | INFO     | 
[2026-03-12 15:05:37] 2026-03-12 14:04:43,392 | INFO     | executing command: ls -lF /var/lib/boinc/slots/21
[2026-03-12 15:05:37] 2026-03-12 14:04:43,403 | INFO     | time since job start (17806s) is within the limit (345600.0s)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,759 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,760 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,760 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,760 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,760 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,760 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,760 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,760 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,760 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,760 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,761 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,761 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,761 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,761 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,761 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,761 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,761 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,761 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,761 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 15:05:37] 2026-03-12 14:04:43,762 | INFO     | job 7049920706 has completed (purged errors)
[2026-03-12 15:05:37] 2026-03-12 14:04:43,762 | INFO     | overall cleanup function is called
[2026-03-12 15:05:37] 2026-03-12 14:04:44,771 | INFO     | --- collectZombieJob: --- 10, [9884]
[2026-03-12 15:05:37] 2026-03-12 14:04:44,771 | INFO     | zombie collector waiting for pid 9884
[2026-03-12 15:05:37] 2026-03-12 14:04:44,771 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 15:05:37] 2026-03-12 14:04:44,771 | INFO     | collected zombie processes
[2026-03-12 15:05:37] 2026-03-12 14:04:44,771 | INFO     | will attempt to kill all subprocesses of pid=9884
[2026-03-12 15:05:37] 2026-03-12 14:04:44,902 | INFO     | process IDs to be killed: [9884] (in reverse order)
[2026-03-12 15:05:37] 2026-03-12 14:04:45,755 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 15:05:37] 2026-03-12 14:04:45,755 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 15:05:37] 2026-03-12 14:04:45,758 | INFO     | did not find any defunct processes belonging to 9884
[2026-03-12 15:05:37] 2026-03-12 14:04:45,761 | INFO     | did not find any defunct processes belonging to 9884
[2026-03-12 15:05:37] 2026-03-12 14:04:45,761 | INFO     | ready for new job
[2026-03-12 15:05:37] 2026-03-12 14:04:45,761 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 15:05:37] 2026-03-12 14:04:45,763 | INFO     | **************************************
[2026-03-12 15:05:37] 2026-03-12 14:04:45,763 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 15:05:37] 2026-03-12 14:04:45,764 | INFO     | **************************************
[2026-03-12 15:05:37] 2026-03-12 14:04:45,764 | INFO     | 
[2026-03-12 15:05:37] 2026-03-12 14:04:45,764 | INFO     | pilot is running in a VM
[2026-03-12 15:05:37] 2026-03-12 14:04:45,764 | INFO     | architecture information:
[2026-03-12 15:05:37] 2026-03-12 14:04:45,765 | INFO     | executing command: cat /etc/os-release
[2026-03-12 15:05:37] 2026-03-12 14:04:45,783 | INFO     | cat /etc/os-release:
[2026-03-12 15:05:37] NAME="CentOS Linux"
[2026-03-12 15:05:37] VERSION="7 (Core)"
[2026-03-12 15:05:37] ID="centos"
[2026-03-12 15:05:37] ID_LIKE="rhel fedora"
[2026-03-12 15:05:37] VERSION_ID="7"
[2026-03-12 15:05:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 15:05:37] ANSI_COLOR="0;31"
[2026-03-12 15:05:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 15:05:37] HOME_URL="https://www.centos.org/"
[2026-03-12 15:05:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 15:05:37] 
[2026-03-12 15:05:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 15:05:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 15:05:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 15:05:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 15:05:37] 
[2026-03-12 15:05:37] 2026-03-12 14:04:45,784 | INFO     | **************************************
[2026-03-12 15:05:37] 2026-03-12 14:04:46,287 | INFO     | executing command: df -mP /var/lib/boinc/slots/21
[2026-03-12 15:05:37] 2026-03-12 14:04:46,473 | INFO     | sufficient remaining disk space (495419654144 B)
[2026-03-12 15:05:37] 2026-03-12 14:04:46,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 15:05:37] 2026-03-12 14:04:46,474 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 15:05:37] 2026-03-12 14:04:46,474 | INFO     | update_server=False
[2026-03-12 15:05:37] 2026-03-12 14:04:46,474 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 15:05:37] 2026-03-12 14:04:46,821 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 15:05:37] 2026-03-12 14:04:46,821 | INFO     | aborting loop
[2026-03-12 15:05:37] 2026-03-12 14:04:46,885 | INFO     | all data control threads have been joined
[2026-03-12 15:05:37] 2026-03-12 14:04:46,908 | INFO     | all job control threads have been joined
[2026-03-12 15:05:37] 2026-03-12 14:04:47,309 | INFO     | all payload control threads have been joined
[2026-03-12 15:05:37] 2026-03-12 14:04:47,480 | INFO     | [job] retrieve thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:47,572 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:47,827 | INFO     | [job] job monitor thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:47,875 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 15:05:37] 2026-03-12 14:04:47,890 | INFO     | [data] control thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:47,914 | INFO     | [job] control thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:48,035 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:48,041 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:48,145 | INFO     | [data] copytool_in thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:48,315 | INFO     | [payload] control thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:48,391 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 15:05:37] 2026-03-12 14:04:48,402 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 15:05:37] 2026-03-12 14:04:48,421 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:48,656 | INFO     | [payload] failed_post thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:48,893 | INFO     | [job] validate thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:48,960 | INFO     | [payload] validate_post thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:49,408 | INFO     | [job] queue monitor thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:49,881 | INFO     | [data] copytool_out thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:04:52,400 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 15:05:37] 2026-03-12 14:05:16,562 | INFO     | PID=5412 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-12 15:05:37] 2026-03-12 14:05:16,562 | INFO     | .. there are 9 such processes running
[2026-03-12 15:05:37] 2026-03-12 14:05:16,563 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 15:05:37] 2026-03-12 14:05:16,563 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 15:05:37] 2026-03-12 14:05:16,564 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 15:05:37] 2026-03-12 14:05:26,679 | INFO     | [monitor] cgroup control has ended
[2026-03-12 15:05:37] 2026-03-12 14:05:28,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140147819202368)>', '<ExcThread(monitor, started 140147349755648)>']
[2026-03-12 15:05:37] 2026-03-12 14:05:28,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 15:05:37] 2026-03-12 14:05:28,633 | INFO     | [monitor] control thread has ended
[2026-03-12 15:05:37] 2026-03-12 14:05:33,265 | INFO     | all workflow threads have been joined
[2026-03-12 15:05:37] 2026-03-12 14:05:33,265 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 15:05:37] 2026-03-12 14:05:33,265 | INFO     | traces error code: 0
[2026-03-12 15:05:37] 2026-03-12 14:05:33,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 15:05:37] 2026-03-12 14:05:33,550 [wrapper] ==== pilot stdout END ====
[2026-03-12 15:05:37] 2026-03-12 14:05:33,636 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 15:05:37] 2026-03-12 14:05:33,729 [wrapper] pilotpid: 5412
[2026-03-12 15:05:37] 2026-03-12 14:05:33,818 [wrapper] Pilot exit status: 0
[2026-03-12 15:05:37] 2026-03-12 14:05:34,137 [wrapper] pandaids: 7049920706
[2026-03-12 15:05:37] 2026-03-12 14:05:35,150 [wrapper] cleanup supervisor_pilot 18714 5413
[2026-03-12 15:05:37] 2026-03-12 14:05:35,237 [wrapper] Test setup, not cleaning
[2026-03-12 15:05:37] 2026-03-12 14:05:35,318 [wrapper] apfmon messages muted
[2026-03-12 15:05:37] 2026-03-12 14:05:35,396 [wrapper] ==== wrapper stdout END ====
[2026-03-12 15:05:37] 2026-03-12 14:05:35,515 [wrapper] ==== wrapper stderr END ====
[2026-03-12 15:05:37]  *** Error codes and diagnostics ***
[2026-03-12 15:05:37]     "exeErrorCode": 0,
[2026-03-12 15:05:37]     "exeErrorDiag": "",
[2026-03-12 15:05:37]     "pilotErrorCode": 0,
[2026-03-12 15:05:37]     "pilotErrorDiag": "",
[2026-03-12 15:05:37]  *** Listing of results directory ***
[2026-03-12 15:05:37] total 425768
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc    585013 Mar 11 16:44 pilot3.tar.gz
[2026-03-12 15:05:37] -rwx------. 1 boinc boinc     36322 Mar 11 16:48 runpilot2-wrapper.sh
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc      5111 Mar 11 16:49 queuedata.json
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc       100 Mar 12 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 15:05:37] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 10:02 run_atlas
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc       105 Mar 12 10:02 job.xml
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc      6392 Mar 12 10:02 init_data.xml
[2026-03-12 15:05:37] -rw-r--r--. 2 boinc boinc 215757728 Mar 12 10:02 EVNT.48967008._000530.pool.root.1
[2026-03-12 15:05:37] -rw-r--r--. 2 boinc boinc     15845 Mar 12 10:02 start_atlas.sh
[2026-03-12 15:05:37] drwxrwx--x. 2 boinc boinc        68 Mar 12 10:02 shared
[2026-03-12 15:05:37] -rw-r--r--. 2 boinc boinc    597525 Mar 12 10:02 input.tar.gz
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc         0 Mar 12 10:02 boinc_lockfile
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc      2563 Mar 12 10:02 pandaJob.out
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc       413 Mar 12 10:07 workernode_map.json
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc   1006243 Mar 12 10:07 agis_schedconf.cvmfs.json
[2026-03-12 15:05:37] drwx------. 5 boinc boinc      4096 Mar 12 10:07 pilot3
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc 210336508 Mar 12 15:03 HITS.48967011._013395.pool.root.1
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc       531 Mar 12 15:03 boinc_task_state.xml
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc      1016 Mar 12 15:04 memory_monitor_summary.json
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc   1511578 Mar 12 15:04 agis_ddmendpoints.agis.ALL.json
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc    510165 Mar 12 15:04 log.48967011._013395.job.log.tgz.1
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc      6324 Mar 12 15:04 heartbeat.json
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc        95 Mar 12 15:05 pilot_heartbeat.json
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc      4880 Mar 12 15:05 pilotlog.txt
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc      8192 Mar 12 15:05 boinc_mmap_file
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc        28 Mar 12 15:05 wrapper_checkpoint.txt
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc   2477251 Mar 12 15:05 log.48967011._013395.job.log.1
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc       357 Mar 12 15:05 output.list
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc       620 Mar 12 15:05 runtime_log
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc   3000320 Mar 12 15:05 result.tar.gz
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc      8832 Mar 12 15:05 runtime_log.err
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc       656 Mar 12 15:05 NeeLDmFyaK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmJQhLDmKl3iJn.diag
[2026-03-12 15:05:37] -rw-r--r--. 1 boinc boinc     20728 Mar 12 15:05 stderr.txt
[2026-03-12 15:05:37] HITS file was successfully produced:
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc 210336508 Mar 12 15:03 shared/HITS.pool.root.1
[2026-03-12 15:05:37]  *** Contents of shared directory: ***
[2026-03-12 15:05:37] total 419644
[2026-03-12 15:05:37] -rw-r--r--. 2 boinc boinc 215757728 Mar 12 10:02 ATLAS.root_0
[2026-03-12 15:05:37] -rw-r--r--. 2 boinc boinc     15845 Mar 12 10:02 start_atlas.sh
[2026-03-12 15:05:37] -rw-r--r--. 2 boinc boinc    597525 Mar 12 10:02 input.tar.gz
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc 210336508 Mar 12 15:03 HITS.pool.root.1
[2026-03-12 15:05:37] -rw-------. 1 boinc boinc   3000320 Mar 12 15:05 result.tar.gz
15:05:39 (1278): run_atlas exited; CPU time 68868.646862
15:05:39 (1278): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN