Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:01:47 (2018320): wrapper (7.7.26015): starting
10:01:47 (2018320): wrapper: running run_atlas (--nthreads 2)
[2026-03-12 10:01:47] Arguments: --nthreads 2
[2026-03-12 10:01:47] Threads: 2
[2026-03-12 10:01:47] Checking for CVMFS
[2026-03-12 10:01:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 10:01:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 10:01:48] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 10:01:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 10:01:48] 2.9.2.0 19250 21134 64708 157193 0 50 27281373 36864001 0 130560 0 5819056 99.976 790155 13225 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 10:01:48] CVMFS is ok
[2026-03-12 10:01:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 10:01:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 10:01:48] Further information can be found at the LHC@home message board.
[2026-03-12 10:01:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 10:01:48] Checking for apptainer binary...
[2026-03-12 10:01:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 10:01:48] Running /usr/bin/apptainer --version
[2026-03-12 10:01:48] apptainer version 1.4.1-1.1
[2026-03-12 10:01:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 10:01:48] madmaxA277a
[2026-03-12 10:01:48] apptainer works
[2026-03-12 10:01:48] Set ATHENA_PROC_NUMBER=2
[2026-03-12 10:01:48] Set ATHENA_CORE_NUMBER=2
[2026-03-12 10:01:48] Starting ATLAS job with PandaID=7038493031
[2026-03-12 10:01:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 11:59:25]  *** The last 200 lines of the pilot log: ***
[2026-03-12 11:59:25] 2026-03-12 10:58:41,531 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,531 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,531 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,531 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,531 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,531 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,531 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,532 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,532 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,532 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,532 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,532 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 11:59:25] 2026-03-12 10:58:41,532 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,532 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 11:59:25] 2026-03-12 10:58:41,532 | INFO     | job 7038493031 has completed (purged errors)
[2026-03-12 11:59:25] 2026-03-12 10:58:41,532 | INFO     | overall cleanup function is called
[2026-03-12 11:59:25] 2026-03-12 10:58:42,538 | INFO     | --- collectZombieJob: --- 10, [2026763]
[2026-03-12 11:59:25] 2026-03-12 10:58:42,538 | INFO     | zombie collector waiting for pid 2026763
[2026-03-12 11:59:25] 2026-03-12 10:58:42,538 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 11:59:25] 2026-03-12 10:58:42,539 | INFO     | collected zombie processes
[2026-03-12 11:59:25] 2026-03-12 10:58:42,539 | INFO     | will attempt to kill all subprocesses of pid=2026763
[2026-03-12 11:59:25] 2026-03-12 10:58:42,570 | INFO     | process IDs to be killed: [2026763] (in reverse order)
[2026-03-12 11:59:25] 2026-03-12 10:58:42,590 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 11:59:25] 2026-03-12 10:58:42,590 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 11:59:25] 2026-03-12 10:58:42,591 | INFO     | did not find any defunct processes belonging to 2026763
[2026-03-12 11:59:25] 2026-03-12 10:58:42,591 | INFO     | did not find any defunct processes belonging to 2026763
[2026-03-12 11:59:25] 2026-03-12 10:58:42,591 | INFO     | ready for new job
[2026-03-12 11:59:25] 2026-03-12 10:58:42,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 11:59:25] 2026-03-12 10:58:42,592 | INFO     | **************************************
[2026-03-12 11:59:25] 2026-03-12 10:58:42,592 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 11:59:25] 2026-03-12 10:58:42,592 | INFO     | **************************************
[2026-03-12 11:59:25] 2026-03-12 10:58:42,592 | INFO     | 
[2026-03-12 11:59:25] 2026-03-12 10:58:42,592 | INFO     | architecture information:
[2026-03-12 11:59:25] 2026-03-12 10:58:42,592 | INFO     | executing command: cat /etc/os-release
[2026-03-12 11:59:25] 2026-03-12 10:58:42,601 | INFO     | cat /etc/os-release:
[2026-03-12 11:59:25] NAME="CentOS Linux"
[2026-03-12 11:59:25] VERSION="7 (Core)"
[2026-03-12 11:59:25] ID="centos"
[2026-03-12 11:59:25] ID_LIKE="rhel fedora"
[2026-03-12 11:59:25] VERSION_ID="7"
[2026-03-12 11:59:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 11:59:25] ANSI_COLOR="0;31"
[2026-03-12 11:59:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 11:59:25] HOME_URL="https://www.centos.org/"
[2026-03-12 11:59:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 11:59:25] 
[2026-03-12 11:59:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 11:59:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 11:59:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 11:59:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 11:59:25] 
[2026-03-12 11:59:25] 2026-03-12 10:58:42,601 | INFO     | **************************************
[2026-03-12 11:59:25] 2026-03-12 10:58:43,104 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 11:59:25] 2026-03-12 10:58:43,117 | INFO     | sufficient remaining disk space (490604593152 B)
[2026-03-12 11:59:25] 2026-03-12 10:58:43,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 11:59:25] 2026-03-12 10:58:43,117 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 11:59:25] 2026-03-12 10:58:43,117 | INFO     | update_server=False
[2026-03-12 11:59:25] 2026-03-12 10:58:43,117 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 11:59:25] 2026-03-12 10:58:43,117 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-12 11:59:25] 2026-03-12 10:58:43,118 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 11:59:25] 2026-03-12 10:58:43,118 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 11:59:25] 2026-03-12 10:58:43,118 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 11:59:25] 2026-03-12 10:58:43,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 11:59:25] 2026-03-12 10:58:43,118 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 11:59:25] 2026-03-12 10:58:43,192 | INFO     | all payload control threads have been joined
[2026-03-12 11:59:25] 2026-03-12 10:58:43,400 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 11:59:25] 2026-03-12 10:58:43,401 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 11:59:25] 2026-03-12 10:58:43,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 11:59:25] 2026-03-12 10:58:43,401 | INFO     | will abort loop
[2026-03-12 11:59:25] 2026-03-12 10:58:43,402 | INFO     | all data control threads have been joined
[2026-03-12 11:59:25] 2026-03-12 10:58:43,658 | INFO     | all job control threads have been joined
[2026-03-12 11:59:25] 2026-03-12 10:58:44,123 | INFO     | [job] retrieve thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:44,124 | INFO     | [job] queue monitor thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:44,137 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:44,192 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:44,198 | INFO     | [payload] control thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:44,256 | INFO     | [payload] validate_post thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:44,291 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 11:59:25] 2026-03-12 10:58:44,346 | INFO     | [data] copytool_in thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:44,369 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:44,407 | INFO     | [job] job monitor thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:44,408 | INFO     | [data] control thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:44,664 | INFO     | [job] control thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:45,050 | INFO     | [payload] failed_post thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:45,500 | INFO     | [job] validate thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:45,532 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:46,297 | INFO     | [data] copytool_out thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:58:47,125 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 11:59:25] 2026-03-12 10:59:20,272 | INFO     | [monitor] cgroup control has ended
[2026-03-12 11:59:25] 2026-03-12 10:59:20,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638664296256)>', '<ExcThread(monitor, started 140637982660352)>']
[2026-03-12 11:59:25] 2026-03-12 10:59:21,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 11:59:25] 2026-03-12 10:59:21,316 | INFO     | [monitor] control thread has ended
[2026-03-12 11:59:25] 2026-03-12 10:59:25,550 | INFO     | all workflow threads have been joined
[2026-03-12 11:59:25] 2026-03-12 10:59:25,550 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 11:59:25] 2026-03-12 10:59:25,551 | INFO     | traces error code: 0
[2026-03-12 11:59:25] 2026-03-12 10:59:25,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 11:59:25] 2026-03-12 10:59:25,592 [wrapper] ==== pilot stdout END ====
[2026-03-12 11:59:25] 2026-03-12 10:59:25,595 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 11:59:25] 2026-03-12 10:59:25,598 [wrapper] pilotpid: 2022351
[2026-03-12 11:59:25] 2026-03-12 10:59:25,600 [wrapper] Pilot exit status: 0
[2026-03-12 11:59:25] 2026-03-12 10:59:25,608 [wrapper] pandaids: 7038493031
[2026-03-12 11:59:25] 2026-03-12 10:59:25,621 [wrapper] cleanup supervisor_pilot 2031679 2022352
[2026-03-12 11:59:25] 2026-03-12 10:59:25,624 [wrapper] Test setup, not cleaning
[2026-03-12 11:59:25] 2026-03-12 10:59:25,626 [wrapper] apfmon messages muted
[2026-03-12 11:59:25] 2026-03-12 10:59:25,628 [wrapper] ==== wrapper stdout END ====
[2026-03-12 11:59:25] 2026-03-12 10:59:25,630 [wrapper] ==== wrapper stderr END ====
[2026-03-12 11:59:25]  *** Error codes and diagnostics ***
[2026-03-12 11:59:25]     "exeErrorCode": 0,
[2026-03-12 11:59:25]     "exeErrorDiag": "",
[2026-03-12 11:59:25]     "pilotErrorCode": 0,
[2026-03-12 11:59:25]     "pilotErrorDiag": "",
[2026-03-12 11:59:25]  *** Listing of results directory ***
[2026-03-12 11:59:25] total 617772
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc    584627 Mar  3 14:54 pilot3.tar.gz
[2026-03-12 11:59:25] -rwx------ 1 boinc boinc     36322 Mar  3 14:58 runpilot2-wrapper.sh
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc      5111 Mar  3 15:00 queuedata.json
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc       100 Mar 12 10:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 11:59:25] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 10:01 run_atlas
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc       105 Mar 12 10:01 job.xml
[2026-03-12 11:59:25] -rw-r--r-- 2 boinc boinc 439251894 Mar 12 10:01 EVNT.46701403._001011.pool.root.1
[2026-03-12 11:59:25] -rw-r--r-- 2 boinc boinc    597949 Mar 12 10:01 input.tar.gz
[2026-03-12 11:59:25] -rw-r--r-- 2 boinc boinc     15845 Mar 12 10:01 start_atlas.sh
[2026-03-12 11:59:25] drwxrwx--x 2 boinc boinc      4096 Mar 12 10:01 shared
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc         0 Mar 12 10:01 boinc_setup_complete
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc      6209 Mar 12 10:01 init_data.xml
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc         0 Mar 12 10:01 boinc_lockfile
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc      2561 Mar 12 10:01 pandaJob.out
[2026-03-12 11:59:25] -rw------- 1 boinc boinc   1006243 Mar 12 10:02 agis_schedconf.cvmfs.json
[2026-03-12 11:59:25] -rw------- 1 boinc boinc   1511578 Mar 12 10:02 agis_ddmendpoints.agis.ALL.json
[2026-03-12 11:59:25] -rw------- 1 boinc boinc       423 Mar 12 10:02 workernode_map.json
[2026-03-12 11:59:25] drwx------ 5 boinc boinc      4096 Mar 12 10:02 pilot3
[2026-03-12 11:59:25] -rw------- 1 boinc boinc 186812742 Mar 12 11:58 HITS.48955010._000535.pool.root.1
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc       530 Mar 12 11:58 boinc_task_state.xml
[2026-03-12 11:59:25] -rw------- 1 boinc boinc        95 Mar 12 11:58 pilot_heartbeat.json
[2026-03-12 11:59:25] -rw------- 1 boinc boinc      1014 Mar 12 11:58 memory_monitor_summary.json
[2026-03-12 11:59:25] -rw------- 1 boinc boinc    293113 Mar 12 11:58 log.48955010._000535.job.log.tgz.1
[2026-03-12 11:59:25] -rw------- 1 boinc boinc      6307 Mar 12 11:58 heartbeat.json
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc      8192 Mar 12 11:59 boinc_mmap_file
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc        27 Mar 12 11:59 wrapper_checkpoint.txt
[2026-03-12 11:59:25] -rw------- 1 boinc boinc      4738 Mar 12 11:59 pilotlog.txt
[2026-03-12 11:59:25] -rw------- 1 boinc boinc   1006098 Mar 12 11:59 log.48955010._000535.job.log.1
[2026-03-12 11:59:25] -rw------- 1 boinc boinc       357 Mar 12 11:59 output.list
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc       620 Mar 12 11:59 runtime_log
[2026-03-12 11:59:25] -rw------- 1 boinc boinc   1320960 Mar 12 11:59 result.tar.gz
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc      8921 Mar 12 11:59 runtime_log.err
[2026-03-12 11:59:25] -rw------- 1 boinc boinc       662 Mar 12 11:59 4ASNDmcRfH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJzGLDmGmdAOn.diag
[2026-03-12 11:59:25] -rw-r--r-- 1 boinc boinc     12400 Mar 12 11:59 stderr.txt
[2026-03-12 11:59:25] HITS file was successfully produced:
[2026-03-12 11:59:25] -rw------- 1 boinc boinc 186812742 Mar 12 11:58 shared/HITS.pool.root.1
[2026-03-12 11:59:25]  *** Contents of shared directory: ***
[2026-03-12 11:59:25] total 613296
[2026-03-12 11:59:25] -rw-r--r-- 2 boinc boinc 439251894 Mar 12 10:01 ATLAS.root_0
[2026-03-12 11:59:25] -rw-r--r-- 2 boinc boinc    597949 Mar 12 10:01 input.tar.gz
[2026-03-12 11:59:25] -rw-r--r-- 2 boinc boinc     15845 Mar 12 10:01 start_atlas.sh
[2026-03-12 11:59:25] -rw------- 1 boinc boinc 186812742 Mar 12 11:58 HITS.pool.root.1
[2026-03-12 11:59:25] -rw------- 1 boinc boinc   1320960 Mar 12 11:59 result.tar.gz
11:59:26 (2018320): run_atlas exited; CPU time 13549.585307
11:59:26 (2018320): called boinc_finish(0)

</stderr_txt>
]]>

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