Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:07:41 (2815740): wrapper (7.7.26015): starting
10:07:41 (2815740): wrapper: running run_atlas (--nthreads 3)
[2026-03-12 10:07:41] Arguments: --nthreads 3
[2026-03-12 10:07:41] Threads: 3
[2026-03-12 10:07:41] Checking for CVMFS
[2026-03-12 10:07:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 10:07:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 10:07:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 10:07:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 10:07:41] 2.9.2.0 3302326 21107 86852 157193 1 49 33598207 36864001 0 130560 0 8599779 99.983 796334 13950 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 10:07:41] CVMFS is ok
[2026-03-12 10:07:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 10:07:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 10:07:41] Further information can be found at the LHC@home message board.
[2026-03-12 10:07:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 10:07:41] Checking for apptainer binary...
[2026-03-12 10:07:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 10:07:41] Running /usr/bin/apptainer --version
[2026-03-12 10:07:41] apptainer version 1.4.1-1.1
[2026-03-12 10:07:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 10:07:41] atlasA303
[2026-03-12 10:07:41] apptainer works
[2026-03-12 10:07:41] Set ATHENA_PROC_NUMBER=3
[2026-03-12 10:07:41] Set ATHENA_CORE_NUMBER=3
[2026-03-12 10:07:41] Starting ATLAS job with PandaID=7038490045
[2026-03-12 10:07:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 11:29:10]  *** The last 200 lines of the pilot log: ***
[2026-03-12 11:29:10] 2026-03-12 10:28:39,441 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 11:29:10] 2026-03-12 10:28:39,441 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 11:29:10] 2026-03-12 10:28:39,441 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 11:29:10] 2026-03-12 10:28:39,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 11:29:10] 2026-03-12 10:28:39,442 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 11:29:10] 2026-03-12 10:28:39,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 11:29:10] 2026-03-12 10:28:39,442 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 11:29:10] 2026-03-12 10:28:39,442 | INFO     | job 7038490045 has completed (purged errors)
[2026-03-12 11:29:10] 2026-03-12 10:28:39,442 | INFO     | overall cleanup function is called
[2026-03-12 11:29:10] 2026-03-12 10:28:40,448 | INFO     | --- collectZombieJob: --- 10, [2824301]
[2026-03-12 11:29:10] 2026-03-12 10:28:40,449 | INFO     | zombie collector waiting for pid 2824301
[2026-03-12 11:29:10] 2026-03-12 10:28:40,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 11:29:10] 2026-03-12 10:28:40,449 | INFO     | collected zombie processes
[2026-03-12 11:29:10] 2026-03-12 10:28:40,449 | INFO     | will attempt to kill all subprocesses of pid=2824301
[2026-03-12 11:29:10] 2026-03-12 10:28:40,493 | INFO     | process IDs to be killed: [2824301] (in reverse order)
[2026-03-12 11:29:10] 2026-03-12 10:28:40,517 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 11:29:10] 2026-03-12 10:28:40,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 11:29:10] 2026-03-12 10:28:40,519 | INFO     | did not find any defunct processes belonging to 2824301
[2026-03-12 11:29:10] 2026-03-12 10:28:40,520 | INFO     | did not find any defunct processes belonging to 2824301
[2026-03-12 11:29:10] 2026-03-12 10:28:40,520 | INFO     | ready for new job
[2026-03-12 11:29:10] 2026-03-12 10:28:40,520 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 11:29:10] 2026-03-12 10:28:40,521 | INFO     | **************************************
[2026-03-12 11:29:10] 2026-03-12 10:28:40,521 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 11:29:10] 2026-03-12 10:28:40,521 | INFO     | **************************************
[2026-03-12 11:29:10] 2026-03-12 10:28:40,521 | INFO     | 
[2026-03-12 11:29:10] 2026-03-12 10:28:40,521 | INFO     | architecture information:
[2026-03-12 11:29:10] 2026-03-12 10:28:40,521 | INFO     | executing command: cat /etc/os-release
[2026-03-12 11:29:10] 2026-03-12 10:28:40,530 | INFO     | cat /etc/os-release:
[2026-03-12 11:29:10] NAME="CentOS Linux"
[2026-03-12 11:29:10] VERSION="7 (Core)"
[2026-03-12 11:29:10] ID="centos"
[2026-03-12 11:29:10] ID_LIKE="rhel fedora"
[2026-03-12 11:29:10] VERSION_ID="7"
[2026-03-12 11:29:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 11:29:10] ANSI_COLOR="0;31"
[2026-03-12 11:29:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 11:29:10] HOME_URL="https://www.centos.org/"
[2026-03-12 11:29:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 11:29:10] 
[2026-03-12 11:29:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 11:29:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 11:29:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 11:29:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 11:29:10] 
[2026-03-12 11:29:10] 2026-03-12 10:28:40,531 | INFO     | **************************************
[2026-03-12 11:29:10] 2026-03-12 10:28:41,034 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 11:29:10] 2026-03-12 10:28:41,047 | INFO     | sufficient remaining disk space (370305662976 B)
[2026-03-12 11:29:10] 2026-03-12 10:28:41,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 11:29:10] 2026-03-12 10:28:41,047 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 11:29:10] 2026-03-12 10:28:41,047 | INFO     | update_server=False
[2026-03-12 11:29:10] 2026-03-12 10:28:41,047 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 11:29:10] 2026-03-12 10:28:41,404 | INFO     | all payload control threads have been joined
[2026-03-12 11:29:10] 2026-03-12 10:28:41,555 | INFO     | all data control threads have been joined
[2026-03-12 11:29:10] 2026-03-12 10:28:42,016 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 11:29:10] 2026-03-12 10:28:42,017 | INFO     | aborting loop
[2026-03-12 11:29:10] 2026-03-12 10:28:42,053 | INFO     | [job] retrieve thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:42,053 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:42,182 | INFO     | [data] copytool_in thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:42,406 | INFO     | [payload] control thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:42,467 | INFO     | all job control threads have been joined
[2026-03-12 11:29:10] 2026-03-12 10:28:42,534 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 11:29:10] 2026-03-12 10:28:42,560 | INFO     | [data] control thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:42,691 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:43,022 | INFO     | [job] job monitor thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:43,116 | INFO     | [payload] validate_post thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:43,377 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:43,433 | INFO     | [job] validate thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:43,469 | INFO     | [job] control thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:43,551 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:43,608 | INFO     | [payload] failed_post thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:43,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 11:29:10] 2026-03-12 10:28:44,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 11:29:10] 2026-03-12 10:28:44,541 | INFO     | [data] copytool_out thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:45,003 | INFO     | [job] queue monitor thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:47,691 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 11:29:10] 2026-03-12 10:28:55,998 | INFO     | [monitor] cgroup control has ended
[2026-03-12 11:29:10] 2026-03-12 10:28:57,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139748217747264)>', '<ExcThread(monitor, started 139747867473664)>']
[2026-03-12 11:29:10] 2026-03-12 10:29:02,028 | INFO     | all workflow threads have been joined
[2026-03-12 11:29:10] 2026-03-12 10:29:02,029 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 11:29:10] 2026-03-12 10:29:02,029 | INFO     | traces error code: 0
[2026-03-12 11:29:10] 2026-03-12 10:29:02,029 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 11:29:10] 2026-03-12 10:29:10,654 | INFO     | PID=2819810 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 11:29:10] 2026-03-12 10:29:10,654 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 11:29:10] 2026-03-12 10:29:10,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 11:29:10] 2026-03-12 10:29:10,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 11:29:10] 2026-03-12 10:29:10,655 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 11:29:10] 2026-03-12 10:29:10,655 | CRITICAL | thread 'MainThread' is not alive
[2026-03-12 11:29:10] 2026-03-12 10:29:10,655 | INFO     | [monitor] control thread has ended
[2026-03-12 11:29:10] 2026-03-12 10:29:10,702 [wrapper] ==== pilot stdout END ====
[2026-03-12 11:29:10] 2026-03-12 10:29:10,704 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 11:29:10] 2026-03-12 10:29:10,706 [wrapper] pilotpid: 2819810
[2026-03-12 11:29:10] 2026-03-12 10:29:10,709 [wrapper] Pilot exit status: 0
[2026-03-12 11:29:10] 2026-03-12 10:29:10,716 [wrapper] pandaids: 7038490045
[2026-03-12 11:29:10] 2026-03-12 10:29:10,732 [wrapper] cleanup supervisor_pilot 2846521 2819811
[2026-03-12 11:29:10] 2026-03-12 10:29:10,734 [wrapper] Test setup, not cleaning
[2026-03-12 11:29:10] 2026-03-12 10:29:10,737 [wrapper] apfmon messages muted
[2026-03-12 11:29:10] 2026-03-12 10:29:10,739 [wrapper] ==== wrapper stdout END ====
[2026-03-12 11:29:10] 2026-03-12 10:29:10,741 [wrapper] ==== wrapper stderr END ====
[2026-03-12 11:29:10]  *** Error codes and diagnostics ***
[2026-03-12 11:29:10]     "exeErrorCode": 0,
[2026-03-12 11:29:10]     "exeErrorDiag": "",
[2026-03-12 11:29:10]     "pilotErrorCode": 0,
[2026-03-12 11:29:10]     "pilotErrorDiag": "",
[2026-03-12 11:29:10]  *** Listing of results directory ***
[2026-03-12 11:29:10] total 629504
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc    584627 Mar  3 14:54 pilot3.tar.gz
[2026-03-12 11:29:10] -rwx------ 1 boinc boinc     36322 Mar  3 14:58 runpilot2-wrapper.sh
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc      5111 Mar  3 15:00 queuedata.json
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc       100 Mar 12 10:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 11:29:10] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 10:07 run_atlas
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc       105 Mar 12 10:07 job.xml
[2026-03-12 11:29:10] -rw-r--r-- 2 boinc boinc 439801386 Mar 12 10:07 EVNT.46701403._001009.pool.root.1
[2026-03-12 11:29:10] drwxrwx--x 2 boinc boinc      4096 Mar 12 10:07 shared
[2026-03-12 11:29:10] -rw-r--r-- 2 boinc boinc    597937 Mar 12 10:07 input.tar.gz
[2026-03-12 11:29:10] -rw-r--r-- 2 boinc boinc     15845 Mar 12 10:07 start_atlas.sh
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc         0 Mar 12 10:07 boinc_setup_complete
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc      6447 Mar 12 10:07 init_data.xml
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc         0 Mar 12 10:07 boinc_lockfile
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc      2560 Mar 12 10:07 pandaJob.out
[2026-03-12 11:29:10] -rw------- 1 boinc boinc   1006243 Mar 12 10:07 agis_schedconf.cvmfs.json
[2026-03-12 11:29:10] -rw------- 1 boinc boinc   1511578 Mar 12 10:07 agis_ddmendpoints.agis.ALL.json
[2026-03-12 11:29:10] -rw------- 1 boinc boinc       425 Mar 12 10:07 workernode_map.json
[2026-03-12 11:29:10] drwx------ 5 boinc boinc      4096 Mar 12 10:07 pilot3
[2026-03-12 11:29:10] -rw------- 1 boinc boinc        95 Mar 12 11:28 pilot_heartbeat.json
[2026-03-12 11:29:10] -rw------- 1 boinc boinc 198938405 Mar 12 11:28 HITS.48955010._000423.pool.root.1
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc       530 Mar 12 11:28 boinc_task_state.xml
[2026-03-12 11:29:10] -rw------- 1 boinc boinc      1011 Mar 12 11:28 memory_monitor_summary.json
[2026-03-12 11:29:10] -rw------- 1 boinc boinc    265294 Mar 12 11:28 log.48955010._000423.job.log.tgz.1
[2026-03-12 11:29:10] -rw------- 1 boinc boinc      6297 Mar 12 11:28 heartbeat.json
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc        27 Mar 12 11:28 wrapper_checkpoint.txt
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc      8192 Mar 12 11:28 boinc_mmap_file
[2026-03-12 11:29:10] -rw------- 1 boinc boinc       817 Mar 12 11:29 pilotlog.txt
[2026-03-12 11:29:10] -rw------- 1 boinc boinc    711984 Mar 12 11:29 log.48955010._000423.job.log.1
[2026-03-12 11:29:10] -rw------- 1 boinc boinc       357 Mar 12 11:29 output.list
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc       620 Mar 12 11:29 runtime_log
[2026-03-12 11:29:10] -rw------- 1 boinc boinc    993280 Mar 12 11:29 result.tar.gz
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc      8911 Mar 12 11:29 runtime_log.err
[2026-03-12 11:29:10] -rw------- 1 boinc boinc       660 Mar 12 11:29 eCtMDmcRfH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmoyGLDm1EA6Ym.diag
[2026-03-12 11:29:10] -rw-r--r-- 1 boinc boinc     11614 Mar 12 11:29 stderr.txt
[2026-03-12 11:29:10] HITS file was successfully produced:
[2026-03-12 11:29:10] -rw------- 1 boinc boinc 198938405 Mar 12 11:28 shared/HITS.pool.root.1
[2026-03-12 11:29:10]  *** Contents of shared directory: ***
[2026-03-12 11:29:10] total 625352
[2026-03-12 11:29:10] -rw-r--r-- 2 boinc boinc 439801386 Mar 12 10:07 ATLAS.root_0
[2026-03-12 11:29:10] -rw-r--r-- 2 boinc boinc    597937 Mar 12 10:07 input.tar.gz
[2026-03-12 11:29:10] -rw-r--r-- 2 boinc boinc     15845 Mar 12 10:07 start_atlas.sh
[2026-03-12 11:29:10] -rw------- 1 boinc boinc 198938405 Mar 12 11:28 HITS.pool.root.1
[2026-03-12 11:29:10] -rw------- 1 boinc boinc    993280 Mar 12 11:29 result.tar.gz
11:29:12 (2815740): run_atlas exited; CPU time 13911.752179
11:29:12 (2815740): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN