Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:41:52 (1567): wrapper (7.7.26015): starting
14:41:52 (1567): wrapper: running run_atlas (--nthreads 12)
[2026-03-11 14:41:52] Arguments: --nthreads 12
[2026-03-11 14:41:52] Threads: 12
[2026-03-11 14:41:52] Checking for CVMFS
[2026-03-11 14:41:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 14:41:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 14:41:53] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 14:41:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 14:41:53] 2.11.2.0 3081 439208 98956 157166 3 1 11037941 20275200 1 130560 1 190032365 99.955 24631877 17212 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-11 14:41:53] CVMFS is ok
[2026-03-11 14:41:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 14:41:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 14:41:53] Further information can be found at the LHC@home message board.
[2026-03-11 14:41:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 14:41:53] Checking for apptainer binary...
[2026-03-11 14:41:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 14:41:53] Running /usr/bin/apptainer --version
[2026-03-11 14:41:53] apptainer version 1.3.2-1.el7
[2026-03-11 14:41:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 14:41:55] c-205-29.aglt2.org
[2026-03-11 14:41:55] apptainer works
[2026-03-11 14:41:55] Set ATHENA_PROC_NUMBER=12
[2026-03-11 14:41:55] Set ATHENA_CORE_NUMBER=12
[2026-03-11 14:41:55] Starting ATLAS job with PandaID=7036277403
[2026-03-11 14:41:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 16:09:41]  *** The last 200 lines of the pilot log: ***
[2026-03-11 16:09:41]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-11 16:09:41]  is_altstaged=None
[2026-03-11 16:09:41]  is_tar=False
[2026-03-11 16:09:41]  lfn=log.48838581._005432.job.log.tgz.1
[2026-03-11 16:09:41]  mtime=0
[2026-03-11 16:09:41]  protocol_id=None
[2026-03-11 16:09:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-11 16:09:41]  replicas=None
[2026-03-11 16:09:41]  scope=mc23_13p6TeV
[2026-03-11 16:09:41]  status=None
[2026-03-11 16:09:41]  status_code=0
[2026-03-11 16:09:41]  storage_token=
[2026-03-11 16:09:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7036277403/log.48838581._005432.job.log.tgz.1
[2026-03-11 16:09:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/35/log.48838581._005432.job.log.tgz.1
[2026-03-11 16:09:41]  workdir=None
[2026-03-11 16:09:41] ]
[2026-03-11 16:09:41] 2026-03-11 20:09:04,736 | INFO     | transferring file log.48838581._005432.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7036277403/log.48838581._005432.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-11 16:09:41] 2026-03-11 20:09:04,736 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7036277403/log.48838581._005432.job.log.tgz.1 /tmp/boinchome/slots/0/log.48838581._005432.job
[2026-03-11 16:09:41] 2026-03-11 20:09:04,760 | INFO     | adding to output.list: log.48838581._005432.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/35/log.48838581._005432.job.log.tg
[2026-03-11 16:09:41] 2026-03-11 20:09:04,760 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-11 16:09:41] 2026-03-11 20:09:04,761 | INFO     | summary of transferred files:
[2026-03-11 16:09:41] 2026-03-11 20:09:04,761 | INFO     |  -- lfn=log.48838581._005432.job.log.tgz.1, status_code=0, status=transferred
[2026-03-11 16:09:41] 2026-03-11 20:09:04,761 | INFO     | stage-out finished correctly
[2026-03-11 16:09:41] 2026-03-11 20:09:05,481 | WARNING  | process 10109 can no longer be monitored (due to stat problems) - aborting
[2026-03-11 16:09:41] 2026-03-11 20:09:05,482 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7036277403/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 16:09:41] 2026-03-11 20:09:05,569 | INFO     | number of running child processes to parent process 10109: 1
[2026-03-11 16:09:41] 2026-03-11 20:09:05,570 | INFO     | maximum number of monitored processes: 6
[2026-03-11 16:09:41] 2026-03-11 20:09:06,378 | INFO     | time since job start (5210s) is within the limit (349056.0s)
[2026-03-11 16:09:41] 2026-03-11 20:09:07,765 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-11 16:09:41] 2026-03-11 20:09:08,073 | INFO     | monitor loop #395: job 0:7036277403 is in state 'finished'
[2026-03-11 16:09:41] 2026-03-11 20:09:08,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-11 16:09:41] 2026-03-11 20:09:08,383 | INFO     | time since job start (5212s) is within the limit (349056.0s)
[2026-03-11 16:09:41] 2026-03-11 20:09:08,694 | INFO     | job 7036277403 has state=finished
[2026-03-11 16:09:41] 2026-03-11 20:09:08,694 | INFO     | preparing for final server update for job 7036277403 in state='finished'
[2026-03-11 16:09:41] 2026-03-11 20:09:08,695 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7036277403/jobReport.json
[2026-03-11 16:09:41] 2026-03-11 20:09:08,697 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-11 16:09:41] 2026-03-11 20:09:08,698 | INFO     | this job has now completed (state=finished)
[2026-03-11 16:09:41] 2026-03-11 20:09:08,698 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-11 16:09:41] 2026-03-11 20:09:08,698 | INFO     | log transfer has been attempted: DONE
[2026-03-11 16:09:41] 2026-03-11 20:09:08,698 | INFO     | job 7036277403 has finished - writing final server update
[2026-03-11 16:09:41] 2026-03-11 20:09:08,699 | INFO     | total number of processed events: 400 (read)
[2026-03-11 16:09:41] 2026-03-11 20:09:08,702 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7036277403/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 16:09:41] 2026-03-11 20:09:08,702 | INFO     | extracted standard info from prmon json
[2026-03-11 16:09:41] 2026-03-11 20:09:08,702 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 16:09:41] 2026-03-11 20:09:08,703 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 16:09:41] 2026-03-11 20:09:08,703 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 16:09:41] 2026-03-11 20:09:08,703 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 16:09:41] 2026-03-11 20:09:08,705 | INFO     | fitting pss+swap vs Time
[2026-03-11 16:09:41] 2026-03-11 20:09:08,705 | INFO     | sum of square deviations: 147126479.5
[2026-03-11 16:09:41] 2026-03-11 20:09:08,706 | INFO     | sum of deviations: -10174582656.999998
[2026-03-11 16:09:41] 2026-03-11 20:09:08,706 | INFO     | mean x: 1773257213.5
[2026-03-11 16:09:41] 2026-03-11 20:09:08,706 | INFO     | mean y: 2816170.205128205
[2026-03-11 16:09:41] 2026-03-11 20:09:08,706 | INFO     | intersect: 122633033057.0113
[2026-03-11 16:09:41] 2026-03-11 20:09:08,706 | INFO     | chi2: 0.06445304867832301
[2026-03-11 16:09:41] 2026-03-11 20:09:08,706 | INFO     | current memory leak: -69.16 B/s (using 78 data points, chi2=0.06)
[2026-03-11 16:09:41] 2026-03-11 20:09:08,707 | INFO     | could have reported an average CPU frequency of 1729 MHz (6 samples)
[2026-03-11 16:09:41] 2026-03-11 20:09:08,707 | INFO     | ..............................
[2026-03-11 16:09:41] 2026-03-11 20:09:08,707 | INFO     | . Timing measurements:
[2026-03-11 16:09:41] 2026-03-11 20:09:08,707 | INFO     | . get job = 0 s
[2026-03-11 16:09:41] 2026-03-11 20:09:08,707 | INFO     | . initial setup = 7 s
[2026-03-11 16:09:41] 2026-03-11 20:09:08,707 | INFO     | . payload setup = 7 s
[2026-03-11 16:09:41] 2026-03-11 20:09:08,707 | INFO     | . stage-in = 0 s
[2026-03-11 16:09:41] 2026-03-11 20:09:08,707 | INFO     | . payload execution = 5183 s
[2026-03-11 16:09:41] 2026-03-11 20:09:08,707 | INFO     | . stage-out = 0 s
[2026-03-11 16:09:41] 2026-03-11 20:09:08,708 | INFO     | . log creation = 0 s
[2026-03-11 16:09:41] 2026-03-11 20:09:08,708 | INFO     | ..............................
[2026-03-11 16:09:41] 2026-03-11 20:09:09,020 | INFO     | 
[2026-03-11 16:09:41] 2026-03-11 20:09:09,020 | INFO     | job summary report
[2026-03-11 16:09:41] 2026-03-11 20:09:09,027 | INFO     | --------------------------------------------------
[2026-03-11 16:09:41] 2026-03-11 20:09:09,027 | INFO     | PanDA job id: 7036277403
[2026-03-11 16:09:41] 2026-03-11 20:09:09,027 | INFO     | task id: 48838581
[2026-03-11 16:09:41] 2026-03-11 20:09:09,027 | INFO     | errors: (none)
[2026-03-11 16:09:41] 2026-03-11 20:09:09,028 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 16:09:41] 2026-03-11 20:09:09,028 | INFO     | pilot state: finished 
[2026-03-11 16:09:41] 2026-03-11 20:09:09,028 | INFO     | transexitcode: 0
[2026-03-11 16:09:41] 2026-03-11 20:09:09,028 | INFO     | exeerrorcode: 0
[2026-03-11 16:09:41] 2026-03-11 20:09:09,028 | INFO     | exeerrordiag: 
[2026-03-11 16:09:41] 2026-03-11 20:09:09,028 | INFO     | exitcode: 0
[2026-03-11 16:09:41] 2026-03-11 20:09:09,029 | INFO     | exitmsg: OK
[2026-03-11 16:09:41] 2026-03-11 20:09:09,029 | INFO     | cpuconsumptiontime: 56264 s
[2026-03-11 16:09:41] 2026-03-11 20:09:09,029 | INFO     | nevents: 400
[2026-03-11 16:09:41] 2026-03-11 20:09:09,029 | INFO     | neventsw: 0
[2026-03-11 16:09:41] 2026-03-11 20:09:09,029 | INFO     | pid: 10109
[2026-03-11 16:09:41] 2026-03-11 20:09:09,029 | INFO     | pgrp: 10109
[2026-03-11 16:09:41] 2026-03-11 20:09:09,029 | INFO     | corecount: 12
[2026-03-11 16:09:41] 2026-03-11 20:09:09,030 | INFO     | event service: False
[2026-03-11 16:09:41] 2026-03-11 20:09:09,030 | INFO     | sizes: {0: 2280055, 1: 2280289, 11: 2280289, 5194: 2306570, 5195: 2306569, 5197: 2315623, 5200: 2315807, 5201: 2316001}
[2026-03-11 16:09:41] 2026-03-11 20:09:09,030 | INFO     | --------------------------------------------------
[2026-03-11 16:09:41] 2026-03-11 20:09:09,030 | INFO     | 
[2026-03-11 16:09:41] 2026-03-11 20:09:09,030 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-11 16:09:41] 2026-03-11 20:09:09,056 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,056 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,056 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,057 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,057 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,057 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,057 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,057 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,057 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,058 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,058 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,059 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 16:09:41] 2026-03-11 20:09:09,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,059 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 16:09:41] 2026-03-11 20:09:09,060 | INFO     | job 7036277403 has completed (purged errors)
[2026-03-11 16:09:41] 2026-03-11 20:09:09,060 | INFO     | overall cleanup function is called
[2026-03-11 16:09:41] 2026-03-11 20:09:10,068 | INFO     | --- collectZombieJob: --- 10, [10109]
[2026-03-11 16:09:41] 2026-03-11 20:09:10,068 | INFO     | zombie collector waiting for pid 10109
[2026-03-11 16:09:41] 2026-03-11 20:09:10,069 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 16:09:41] 2026-03-11 20:09:10,069 | INFO     | collected zombie processes
[2026-03-11 16:09:41] 2026-03-11 20:09:10,069 | INFO     | will attempt to kill all subprocesses of pid=10109
[2026-03-11 16:09:41] 2026-03-11 20:09:10,160 | INFO     | process IDs to be killed: [10109] (in reverse order)
[2026-03-11 16:09:41] 2026-03-11 20:09:10,215 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 16:09:41] 2026-03-11 20:09:10,215 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 16:09:41] 2026-03-11 20:09:10,219 | INFO     | did not find any defunct processes belonging to 10109
[2026-03-11 16:09:41] 2026-03-11 20:09:10,223 | INFO     | did not find any defunct processes belonging to 10109
[2026-03-11 16:09:41] 2026-03-11 20:09:10,223 | INFO     | ready for new job
[2026-03-11 16:09:41] 2026-03-11 20:09:10,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 16:09:41] 2026-03-11 20:09:10,225 | INFO     | **************************************
[2026-03-11 16:09:41] 2026-03-11 20:09:10,225 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 16:09:41] 2026-03-11 20:09:10,225 | INFO     | **************************************
[2026-03-11 16:09:41] 2026-03-11 20:09:10,225 | INFO     | 
[2026-03-11 16:09:41] 2026-03-11 20:09:10,226 | INFO     | architecture information:
[2026-03-11 16:09:41] 2026-03-11 20:09:10,226 | INFO     | executing command: cat /etc/os-release
[2026-03-11 16:09:41] 2026-03-11 20:09:10,241 | INFO     | cat /etc/os-release:
[2026-03-11 16:09:41] NAME="CentOS Linux"
[2026-03-11 16:09:41] VERSION="7 (Core)"
[2026-03-11 16:09:41] ID="centos"
[2026-03-11 16:09:41] ID_LIKE="rhel fedora"
[2026-03-11 16:09:41] VERSION_ID="7"
[2026-03-11 16:09:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 16:09:41] ANSI_COLOR="0;31"
[2026-03-11 16:09:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 16:09:41] HOME_URL="https://www.centos.org/"
[2026-03-11 16:09:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 16:09:41] 
[2026-03-11 16:09:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 16:09:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 16:09:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 16:09:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 16:09:41] 
[2026-03-11 16:09:41] 2026-03-11 20:09:10,242 | INFO     | **************************************
[2026-03-11 16:09:41] 2026-03-11 20:09:10,742 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-11 16:09:41] 2026-03-11 20:09:10,759 | INFO     | sufficient remaining disk space (29155655680 B)
[2026-03-11 16:09:41] 2026-03-11 20:09:10,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 16:09:41] 2026-03-11 20:09:10,759 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 16:09:41] 2026-03-11 20:09:10,759 | INFO     | update_server=False
[2026-03-11 16:09:41] 2026-03-11 20:09:10,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 16:09:41] 2026-03-11 20:09:10,760 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 16:09:41] 2026-03-11 20:09:10,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 16:09:41] 2026-03-11 20:09:10,944 | INFO     | all payload control threads have been joined
[2026-03-11 16:09:41] 2026-03-11 20:09:11,580 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 16:09:41] 2026-03-11 20:09:11,581 | INFO     | aborting loop
[2026-03-11 16:09:41] 2026-03-11 20:09:11,711 | INFO     | all data control threads have been joined
[2026-03-11 16:09:41] 2026-03-11 20:09:11,763 | INFO     | [job] queue monitor thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:11,765 | INFO     | [job] retrieve thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:11,950 | INFO     | [payload] control thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:11,952 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:11,997 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:12,035 | INFO     | all job control threads have been joined
[2026-03-11 16:09:41] 2026-03-11 20:09:12,292 | INFO     | [data] copytool_in thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:12,586 | INFO     | [job] job monitor thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:12,602 | INFO     | [payload] failed_post thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:12,712 | INFO     | [data] control thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:12,766 | INFO     | [data] copytool_out thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:12,916 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:13,032 | INFO     | [job] validate thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:13,040 | INFO     | [job] control thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:13,149 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:13,201 | INFO     | [payload] validate_post thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:13,852 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 16:09:41] 2026-03-11 20:09:17,858 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 16:09:41] 2026-03-11 20:09:23,970 | INFO     | [monitor] cgroup control has ended
[2026-03-11 16:09:41] 2026-03-11 20:09:24,391 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140687346288448)>', '<ExcThread(monitor, started 140686015854336)>']
[2026-03-11 16:09:41] 2026-03-11 20:09:29,402 | INFO     | all workflow threads have been joined
[2026-03-11 16:09:41] 2026-03-11 20:09:29,402 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 16:09:41] 2026-03-11 20:09:29,402 | INFO     | traces error code: 0
[2026-03-11 16:09:41] 2026-03-11 20:09:29,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 16:09:41] 2026-03-11 20:09:41,588 | INFO     | PID=5738 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-11 16:09:41] 2026-03-11 20:09:41,589 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 16:09:41] 2026-03-11 20:09:41,589 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 16:09:41] 2026-03-11 20:09:41,589 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 16:09:41] 2026-03-11 20:09:41,589 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 16:09:41] 2026-03-11 20:09:41,589 | INFO     | [monitor] control thread has ended
[2026-03-11 16:09:41] 2026-03-11 20:09:41,673 [wrapper] ==== pilot stdout END ====
[2026-03-11 16:09:41] 2026-03-11 20:09:41,676 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 16:09:41] 2026-03-11 20:09:41,680 [wrapper] pilotpid: 5738
[2026-03-11 16:09:41] 2026-03-11 20:09:41,683 [wrapper] Pilot exit status: 0
[2026-03-11 16:09:41] 2026-03-11 20:09:41,700 [wrapper] pandaids: 7036277403
[2026-03-11 16:09:41] 2026-03-11 20:09:41,741 [wrapper] cleanup supervisor_pilot 32149 5739
[2026-03-11 16:09:41] 2026-03-11 20:09:41,746 [wrapper] Test setup, not cleaning
[2026-03-11 16:09:41] 2026-03-11 20:09:41,750 [wrapper] apfmon messages muted
[2026-03-11 16:09:41] 2026-03-11 20:09:41,753 [wrapper] ==== wrapper stdout END ====
[2026-03-11 16:09:41] 2026-03-11 20:09:41,757 [wrapper] ==== wrapper stderr END ====
[2026-03-11 16:09:41]  *** Error codes and diagnostics ***
[2026-03-11 16:09:41]     "exeErrorCode": 0,
[2026-03-11 16:09:41]     "exeErrorDiag": "",
[2026-03-11 16:09:41]     "pilotErrorCode": 0,
[2026-03-11 16:09:41]     "pilotErrorDiag": "",
[2026-03-11 16:09:41]  *** Listing of results directory ***
[2026-03-11 16:09:41] total 511336
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas    584627 Mar  3 06:44 pilot3.tar.gz
[2026-03-11 16:09:41] -rwx------ 1 boincer umatlas     36322 Mar  3 06:47 runpilot2-wrapper.sh
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas      5111 Mar  3 06:49 queuedata.json
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas       100 Mar 11 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 16:09:41] -rwxr-xr-x 1 boincer umatlas      7986 Mar 11 14:41 run_atlas
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas       105 Mar 11 14:41 job.xml
[2026-03-11 16:09:41] -rw-r--r-- 2 boincer umatlas 289185446 Mar 11 14:41 EVNT.48220205._000226.pool.root.1
[2026-03-11 16:09:41] -rw-r--r-- 2 boincer umatlas     15845 Mar 11 14:41 start_atlas.sh
[2026-03-11 16:09:41] drwxrwx--x 2 boincer umatlas      4096 Mar 11 14:41 shared
[2026-03-11 16:09:41] -rw-r--r-- 2 boincer umatlas    597964 Mar 11 14:41 input.tar.gz
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas         0 Mar 11 14:41 boinc_lockfile
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas      2588 Mar 11 14:41 pandaJob.out
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas        57 Mar 11 14:41 setup.sh.local
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas   1006235 Mar 11 14:42 agis_schedconf.cvmfs.json
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas   1511578 Mar 11 14:42 agis_ddmendpoints.agis.ALL.json
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas       445 Mar 11 14:42 workernode_map.json
[2026-03-11 16:09:41] drwx------ 5 boincer umatlas      4096 Mar 11 14:42 pilot3
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas      5952 Mar 11 16:03 init_data.xml
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas 228205703 Mar 11 16:08 HITS.48838581._005432.pool.root.1
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas       530 Mar 11 16:08 boinc_task_state.xml
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas      1046 Mar 11 16:08 memory_monitor_summary.json
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas    395158 Mar 11 16:09 log.48838581._005432.job.log.tgz.1
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas      6422 Mar 11 16:09 heartbeat.json
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas        27 Mar 11 16:09 wrapper_checkpoint.txt
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas      8192 Mar 11 16:09 boinc_mmap_file
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas        95 Mar 11 16:09 pilot_heartbeat.json
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas       744 Mar 11 16:09 pilotlog.txt
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas    749290 Mar 11 16:09 log.48838581._005432.job.log.1
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas       357 Mar 11 16:09 output.list
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas       620 Mar 11 16:09 runtime_log
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas   1157120 Mar 11 16:09 result.tar.gz
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas      9343 Mar 11 16:09 runtime_log.err
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas       659 Mar 11 16:09 MSRNDmBPdH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwYGLDmwe9VWn.diag
[2026-03-11 16:09:41] -rw-r--r-- 1 boincer umatlas     21491 Mar 11 16:09 stderr.txt
[2026-03-11 16:09:41] HITS file was successfully produced:
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas 228205703 Mar 11 16:08 shared/HITS.pool.root.1
[2026-03-11 16:09:41]  *** Contents of shared directory: ***
[2026-03-11 16:09:41] total 507004
[2026-03-11 16:09:41] -rw-r--r-- 2 boincer umatlas 289185446 Mar 11 14:41 ATLAS.root_0
[2026-03-11 16:09:41] -rw-r--r-- 2 boincer umatlas     15845 Mar 11 14:41 start_atlas.sh
[2026-03-11 16:09:41] -rw-r--r-- 2 boincer umatlas    597964 Mar 11 14:41 input.tar.gz
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas 228205703 Mar 11 16:08 HITS.pool.root.1
[2026-03-11 16:09:41] -rw------- 1 boincer umatlas   1157120 Mar 11 16:09 result.tar.gz
16:09:43 (1567): run_atlas exited; CPU time 56241.317660
16:09:43 (1567): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN