Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:00:55 (29735): wrapper (7.7.26015): starting
08:00:55 (29735): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 08:00:55] Arguments: --nthreads 4
[2026-03-12 08:00:55] Threads: 4
[2026-03-12 08:00:55] Checking for CVMFS
[2026-03-12 08:00:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 08:00:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 08:00:56] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 08:00:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 08:00:56] 2.9.2.0 3064 153 54424 157186 3 50 30351311 36864000 0 130560 0 74485 99.977 5477 4709 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 08:00:56] CVMFS is ok
[2026-03-12 08:00:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 08:00:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 08:00:56] Further information can be found at the LHC@home message board.
[2026-03-12 08:00:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 08:00:56] Checking for apptainer binary...
[2026-03-12 08:00:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 08:00:56] Running /usr/bin/apptainer --version
[2026-03-12 08:00:56] apptainer version 1.4.1-1.1
[2026-03-12 08:00:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 08:00:56] thA338
[2026-03-12 08:00:56] apptainer works
[2026-03-12 08:00:56] Set ATHENA_PROC_NUMBER=4
[2026-03-12 08:00:56] Set ATHENA_CORE_NUMBER=4
[2026-03-12 08:00:56] Starting ATLAS job with PandaID=7036296418
[2026-03-12 08:00:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 09:55:24]  *** The last 200 lines of the pilot log: ***
[2026-03-12 09:55:24] 2026-03-12 08:54:54,497 | INFO     | --- collectZombieJob: --- 10, [38383]
[2026-03-12 09:55:24] 2026-03-12 08:54:54,498 | INFO     | zombie collector waiting for pid 38383
[2026-03-12 09:55:24] 2026-03-12 08:54:54,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 09:55:24] 2026-03-12 08:54:54,498 | INFO     | collected zombie processes
[2026-03-12 09:55:24] 2026-03-12 08:54:54,498 | INFO     | will attempt to kill all subprocesses of pid=38383
[2026-03-12 09:55:24] 2026-03-12 08:54:54,541 | INFO     | process IDs to be killed: [38383] (in reverse order)
[2026-03-12 09:55:24] 2026-03-12 08:54:54,574 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 09:55:24] 2026-03-12 08:54:54,575 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 09:55:24] 2026-03-12 08:54:54,576 | INFO     | did not find any defunct processes belonging to 38383
[2026-03-12 09:55:24] 2026-03-12 08:54:54,577 | INFO     | did not find any defunct processes belonging to 38383
[2026-03-12 09:55:24] 2026-03-12 08:54:54,578 | INFO     | ready for new job
[2026-03-12 09:55:24] 2026-03-12 08:54:54,578 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 09:55:24] 2026-03-12 08:54:54,578 | INFO     | **************************************
[2026-03-12 09:55:24] 2026-03-12 08:54:54,578 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 09:55:24] 2026-03-12 08:54:54,578 | INFO     | **************************************
[2026-03-12 09:55:24] 2026-03-12 08:54:54,578 | INFO     | 
[2026-03-12 09:55:24] 2026-03-12 08:54:54,579 | INFO     | architecture information:
[2026-03-12 09:55:24] 2026-03-12 08:54:54,579 | INFO     | executing command: cat /etc/os-release
[2026-03-12 09:55:24] 2026-03-12 08:54:54,594 | INFO     | cat /etc/os-release:
[2026-03-12 09:55:24] NAME="CentOS Linux"
[2026-03-12 09:55:24] VERSION="7 (Core)"
[2026-03-12 09:55:24] ID="centos"
[2026-03-12 09:55:24] ID_LIKE="rhel fedora"
[2026-03-12 09:55:24] VERSION_ID="7"
[2026-03-12 09:55:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 09:55:24] ANSI_COLOR="0;31"
[2026-03-12 09:55:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 09:55:24] HOME_URL="https://www.centos.org/"
[2026-03-12 09:55:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 09:55:24] 
[2026-03-12 09:55:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 09:55:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 09:55:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 09:55:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 09:55:24] 
[2026-03-12 09:55:24] 2026-03-12 08:54:54,594 | INFO     | **************************************
[2026-03-12 09:55:24] 2026-03-12 08:54:55,097 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 09:55:24] 2026-03-12 08:54:55,115 | INFO     | sufficient remaining disk space (228849614848 B)
[2026-03-12 09:55:24] 2026-03-12 08:54:55,115 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 09:55:24] 2026-03-12 08:54:55,115 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 09:55:24] 2026-03-12 08:54:55,115 | INFO     | update_server=False
[2026-03-12 09:55:24] 2026-03-12 08:54:55,115 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 09:55:24] 2026-03-12 08:54:55,116 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 09:55:24] 2026-03-12 08:54:55,116 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 09:55:24] 2026-03-12 08:54:55,116 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-12 09:55:24] 2026-03-12 08:54:55,116 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 09:55:24] 2026-03-12 08:54:55,116 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 09:55:24] 2026-03-12 08:54:55,116 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 09:55:24] 2026-03-12 08:54:55,790 | INFO     | all data control threads have been joined
[2026-03-12 09:55:24] 2026-03-12 08:54:56,121 | INFO     | [job] retrieve thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:56,122 | INFO     | [job] queue monitor thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:56,255 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 09:55:24] 2026-03-12 08:54:56,279 | INFO     | [payload] failed_post thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:56,322 | INFO     | all payload control threads have been joined
[2026-03-12 09:55:24] 2026-03-12 08:54:56,482 | INFO     | all job control threads have been joined
[2026-03-12 09:55:24] 2026-03-12 08:54:56,796 | INFO     | [data] control thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:56,870 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:56,981 | INFO     | [job] validate thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:57,085 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:57,167 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:57,221 | INFO     | [payload] validate_post thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:57,328 | INFO     | [payload] control thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:57,365 | INFO     | [data] copytool_in thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:57,488 | INFO     | [job] control thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:57,557 | WARNING  | process 38383 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 09:55:24] 2026-03-12 08:54:57,588 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 09:55:24] 2026-03-12 08:54:57,627 | INFO     | number of running child processes to parent process 38383: 1
[2026-03-12 09:55:24] 2026-03-12 08:54:57,627 | INFO     | maximum number of monitored processes: 6
[2026-03-12 09:55:24] 2026-03-12 08:54:57,627 | INFO     | aborting job monitoring since job object (job id=7036296418) has expired
[2026-03-12 09:55:24] 2026-03-12 08:54:57,627 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 09:55:24] 2026-03-12 08:54:57,627 | INFO     | will abort loop
[2026-03-12 09:55:24] 2026-03-12 08:54:58,261 | INFO     | [data] copytool_out thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:58,633 | INFO     | [job] job monitor thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:54:59,123 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:55:05,911 | INFO     | job.realtimelogging is not enabled
[2026-03-12 09:55:24] 2026-03-12 08:55:06,917 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 09:55:24] 2026-03-12 08:55:17,909 | INFO     | [monitor] cgroup control has ended
[2026-03-12 09:55:24] 2026-03-12 08:55:19,130 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139625855194944)>', '<ExcThread(monitor, started 139625049859840)>']
[2026-03-12 09:55:24] 2026-03-12 08:55:19,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 09:55:24] 2026-03-12 08:55:19,240 | INFO     | [monitor] control thread has ended
[2026-03-12 09:55:24] 2026-03-12 08:55:24,149 | INFO     | all workflow threads have been joined
[2026-03-12 09:55:24] 2026-03-12 08:55:24,149 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 09:55:24] 2026-03-12 08:55:24,150 | INFO     | traces error code: 0
[2026-03-12 09:55:24] 2026-03-12 08:55:24,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 09:55:24] 2026-03-12 08:55:24,229 [wrapper] ==== pilot stdout END ====
[2026-03-12 09:55:24] 2026-03-12 08:55:24,233 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 09:55:24] 2026-03-12 08:55:24,237 [wrapper] pilotpid: 33858
[2026-03-12 09:55:24] 2026-03-12 08:55:24,241 [wrapper] Pilot exit status: 0
[2026-03-12 09:55:24] 2026-03-12 08:55:24,253 [wrapper] pandaids: 7036296418
[2026-03-12 09:55:24] 2026-03-12 08:55:24,274 [wrapper] cleanup supervisor_pilot   43884 33859
[2026-03-12 09:55:24] 2026-03-12 08:55:24,278 [wrapper] Test setup, not cleaning
[2026-03-12 09:55:24] 2026-03-12 08:55:24,282 [wrapper] apfmon messages muted
[2026-03-12 09:55:24] 2026-03-12 08:55:24,286 [wrapper] ==== wrapper stdout END ====
[2026-03-12 09:55:24] 2026-03-12 08:55:24,290 [wrapper] ==== wrapper stderr END ====
[2026-03-12 09:55:24]  *** Error codes and diagnostics ***
[2026-03-12 09:55:24]     "exeErrorCode": 0,
[2026-03-12 09:55:24]     "exeErrorDiag": "",
[2026-03-12 09:55:24]     "pilotErrorCode": 0,
[2026-03-12 09:55:24]     "pilotErrorDiag": "",
[2026-03-12 09:55:24]  *** Listing of results directory ***
[2026-03-12 09:55:24] total 354156
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc    584627 Mar  3 14:35 pilot3.tar.gz
[2026-03-12 09:55:24] -rwx------ 1 boinc boinc     36322 Mar  3 14:36 runpilot2-wrapper.sh
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc      5111 Mar  3 14:38 queuedata.json
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc       100 Mar 12 08:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 09:55:24] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 08:00 run_atlas
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc       105 Mar 12 08:00 job.xml
[2026-03-12 09:55:24] -rw-r--r-- 2 boinc boinc 207184093 Mar 12 08:00 EVNT.48455513._000002.pool.root.1
[2026-03-12 09:55:24] -rw-r--r-- 2 boinc boinc    597956 Mar 12 08:00 input.tar.gz
[2026-03-12 09:55:24] -rw-r--r-- 2 boinc boinc     15845 Mar 12 08:00 start_atlas.sh
[2026-03-12 09:55:24] drwxrwx--x 2 boinc boinc      4096 Mar 12 08:00 shared
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc         0 Mar 12 08:00 boinc_setup_complete
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc      6376 Mar 12 08:00 init_data.xml
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc         0 Mar 12 08:00 boinc_lockfile
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc      2597 Mar 12 08:00 pandaJob.out
[2026-03-12 09:55:24] -rw------- 1 boinc boinc   1006243 Mar 12 08:01 agis_schedconf.cvmfs.json
[2026-03-12 09:55:24] -rw------- 1 boinc boinc   1511578 Mar 12 08:01 agis_ddmendpoints.agis.ALL.json
[2026-03-12 09:55:24] -rw------- 1 boinc boinc       427 Mar 12 08:01 workernode_map.json
[2026-03-12 09:55:24] drwx------ 5 boinc boinc      4096 Mar 12 08:01 pilot3
[2026-03-12 09:55:24] -rw------- 1 boinc boinc 149020647 Mar 12 09:54 HITS.48848359._000030.pool.root.1
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc       529 Mar 12 09:54 boinc_task_state.xml
[2026-03-12 09:55:24] -rw------- 1 boinc boinc        95 Mar 12 09:54 pilot_heartbeat.json
[2026-03-12 09:55:24] -rw------- 1 boinc boinc      1021 Mar 12 09:54 memory_monitor_summary.json
[2026-03-12 09:55:24] -rw------- 1 boinc boinc    284688 Mar 12 09:54 log.48848359._000030.job.log.tgz.1
[2026-03-12 09:55:24] -rw------- 1 boinc boinc      6292 Mar 12 09:54 heartbeat.json
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc      8192 Mar 12 09:55 boinc_mmap_file
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc        27 Mar 12 09:55 wrapper_checkpoint.txt
[2026-03-12 09:55:24] -rw------- 1 boinc boinc      5144 Mar 12 09:55 pilotlog.txt
[2026-03-12 09:55:24] -rw------- 1 boinc boinc    982499 Mar 12 09:55 log.48848359._000030.job.log.1
[2026-03-12 09:55:24] -rw------- 1 boinc boinc       357 Mar 12 09:55 output.list
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc       620 Mar 12 09:55 runtime_log
[2026-03-12 09:55:24] -rw------- 1 boinc boinc   1280000 Mar 12 09:55 result.tar.gz
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc      8896 Mar 12 09:55 runtime_log.err
[2026-03-12 09:55:24] -rw------- 1 boinc boinc       657 Mar 12 09:55 7iLLDmH6eH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmlWELDmBf9zqn.diag
[2026-03-12 09:55:24] -rw-r--r-- 1 boinc boinc     11228 Mar 12 09:55 stderr.txt
[2026-03-12 09:55:24] HITS file was successfully produced:
[2026-03-12 09:55:24] -rw------- 1 boinc boinc 149020647 Mar 12 09:54 shared/HITS.pool.root.1
[2026-03-12 09:55:24]  *** Contents of shared directory: ***
[2026-03-12 09:55:24] total 349716
[2026-03-12 09:55:24] -rw-r--r-- 2 boinc boinc 207184093 Mar 12 08:00 ATLAS.root_0
[2026-03-12 09:55:24] -rw-r--r-- 2 boinc boinc    597956 Mar 12 08:00 input.tar.gz
[2026-03-12 09:55:24] -rw-r--r-- 2 boinc boinc     15845 Mar 12 08:00 start_atlas.sh
[2026-03-12 09:55:24] -rw------- 1 boinc boinc 149020647 Mar 12 09:54 HITS.pool.root.1
[2026-03-12 09:55:24] -rw------- 1 boinc boinc   1280000 Mar 12 09:55 result.tar.gz
09:55:25 (29735): run_atlas exited; CPU time 26243.185293
09:55:25 (29735): called boinc_finish(0)

</stderr_txt>
]]>

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