Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-11 18:26:41 (6052): vboxwrapper version 26210
2026-03-11 18:26:41 (6052): BOINC client version: 8.0.2
2026-03-11 18:26:43 (6052): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2026-03-11 18:26:43 (6052): Successfully copied 'init_data.xml' to the shared directory.
2026-03-11 18:26:44 (6052): Create VM. (boinc_54e79dcd71731ccc, slot#0)
2026-03-11 18:26:45 (6052): Setting Memory Size for VM. (4100MB)
2026-03-11 18:26:45 (6052): Setting CPU Count for VM. (1)
2026-03-11 18:26:45 (6052): Setting Chipset Options for VM.
2026-03-11 18:26:46 (6052): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-11 18:26:46 (6052): Setting Boot Options for VM.
2026-03-11 18:26:47 (6052): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-11 18:26:48 (6052): Enabling VM Network Access.
2026-03-11 18:26:48 (6052): Disabling USB Support for VM.
2026-03-11 18:26:49 (6052): Disabling COM Port Support for VM.
2026-03-11 18:26:49 (6052): Disabling LPT Port Support for VM.
2026-03-11 18:26:49 (6052): Disabling Audio Support for VM.
2026-03-11 18:26:50 (6052): Disabling Clipboard Support for VM.
2026-03-11 18:26:50 (6052): Disabling Drag and Drop Support for VM.
2026-03-11 18:26:50 (6052): Adding storage controller(s) to VM.
2026-03-11 18:26:51 (6052): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-11 18:26:52 (6052): Adding VirtualBox Guest Additions to VM.
2026-03-11 18:26:53 (6052): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-11 18:26:53 (6052): forwarding host port 53774 to guest port 80
2026-03-11 18:26:53 (6052): Enabling remote desktop for VM.
2026-03-11 18:26:54 (6052): Required extension pack not installed, remote desktop not enabled.
2026-03-11 18:26:54 (6052): Enabling shared directory for VM.
2026-03-11 18:26:54 (6052): Starting VM using VBoxManage interface. (boinc_54e79dcd71731ccc, slot#0)
2026-03-11 18:27:02 (6052): Successfully started VM. (PID = '3728')
2026-03-11 18:27:02 (6052): Reporting VM Process ID to BOINC.
2026-03-11 18:27:02 (6052): Guest Log: BIOS: VirtualBox 6.1.12
2026-03-11 18:27:02 (6052): Guest Log: CPUID EDX: 0x178bfbff
2026-03-11 18:27:02 (6052): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-11 18:27:02 (6052): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-11 18:27:02 (6052): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-11 18:27:02 (6052): Detected: Web Application Enabled (http://localhost:53774)
2026-03-11 18:27:02 (6052): Preference change detected
2026-03-11 18:27:02 (6052): Setting CPU throttle for VM. (100%)
2026-03-11 18:27:02 (6052): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-11 18:27:04 (6052): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-11 18:27:04 (6052): Guest Log: BIOS: Booting from Hard Disk...
2026-03-11 18:27:36 (6052): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-11 18:27:36 (6052): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-11 18:27:36 (6052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-11 18:27:50 (6052): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-11 18:27:50 (6052): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2026-03-11 18:28:35 (6052): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-11 18:28:35 (6052): Guest Log: 00:00:00.001848 main     Log opened 2026-03-11T18:28:33.276591000Z
2026-03-11 18:28:35 (6052): Guest Log: 00:00:00.002595 main     OS Product: Linux
2026-03-11 18:28:35 (6052): Guest Log: 00:00:00.002806 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-11 18:28:35 (6052): Guest Log: 00:00:00.002882 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-11 18:28:35 (6052): Guest Log: 00:00:00.002965 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-11 18:28:35 (6052): Guest Log: 00:00:00.002966 main     Process ID: 1229
2026-03-11 18:28:35 (6052): Guest Log: 00:00:00.002967 main     Package type: LINUX_64BITS_GENERIC
2026-03-11 18:28:35 (6052): Guest Log: 00:00:00.006785 main     5.2.32 r132073 started. Verbose level = 0
2026-03-11 18:28:36 (6052): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-11 18:28:36 (6052): Guest Log: [INFO] Mounting shared directory
2026-03-11 18:28:37 (6052): Guest Log: [INFO] Checking for init_data.xml
2026-03-11 18:28:45 (6052): Guest Log: 00:00:10.095850 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 526 758 000ns (GuestNow=1 773 268 124 885 842 000 ns GuestLast=1 773 253 713 359 084 000 ns fSetTimeLastLoop=true )
2026-03-11 18:29:02 (6052): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-11 18:29:02 (6052): Guest Log: [INFO] Detected branch: prod
2026-03-11 18:29:04 (6052): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-11 18:29:04 (6052): Guest Log: Copying input files
2026-03-11 18:29:10 (6052): Guest Log: Copied input files into RunAtlas.
2026-03-11 18:29:10 (6052): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-11 18:29:10 (6052): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-11 18:29:10 (6052): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-11 18:29:10 (6052): Guest Log: Further information can be found at the LHC@home message board.
2026-03-11 18:30:22 (6052): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-11 18:30:23 (6052): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-11 18:30:23 (6052): Guest Log: 2.6.3.0 1507 1 30080 157173 3 1 3117743 4096001 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-03-11 18:30:29 (6052): Guest Log: copied the webapp to /var/www
2026-03-11 18:30:29 (6052): Guest Log: core_number=1
2026-03-11 18:30:32 (6052): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-11 18:30:32 (6052): Guest Log:  *** Starting ATLAS job. (PandaID=7049920056 taskID=48967011) ***
2026-03-11 18:48:59 (6052): Guest Log:  *** Job finished ***
2026-03-11 18:48:59 (6052): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:50,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:50,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:51,602 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140071382329152)>', '<ExcThread(monitor, started 140070929544960)>']
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:51,681 [wrapper] supervise_pilot (15 min periods counter: 2)
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:52,092 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:52,094 | INFO     | [monitor] control thread has ended
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:56,608 | INFO     | all workflow threads have been joined
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:56,608 | INFO     | end of generic workflow (traces error code: 0)
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:56,610 | INFO     | traces error code: 0
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:56,611 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:57,089 [wrapper] ==== pilot stdout END ====
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:57,127 [wrapper] ==== wrapper stdout RESUME ====
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:57,171 [wrapper] pilotpid: 5923
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:57,210 [wrapper] Pilot exit status: 0
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:57,408 [wrapper] pandaids: 7049920056
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:57,573 [wrapper] cleanup supervisor_pilot 25262 5924
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:57,618 [wrapper] Test setup, not cleaning
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:57,657 [wrapper] apfmon messages muted
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:57,700 [wrapper] ==== wrapper stdout END ====
2026-03-11 18:48:59 (6052): Guest Log: 2026-03-11 22:48:57,738 [wrapper] ==== wrapper stderr END ====
2026-03-11 18:48:59 (6052): Guest Log:  *** Error codes and diagnostics ***
2026-03-11 18:48:59 (6052): Guest Log:     "exeErrorCode": 65,
2026-03-11 18:48:59 (6052): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2026-03-11 18:48:59 (6052): Guest Log:     "pilotErrorCode": 1305,
2026-03-11 18:48:59 (6052): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2026-03-11 18:48:59 (6052): Guest Log:  *** Listing of results directory ***
2026-03-11 18:48:59 (6052): Guest Log: total 4232
2026-03-11 18:48:59 (6052): Guest Log: -rw-r--r--. 1 atlas atlas  585013 Mar 11 14:39 pilot3.tar.gz
2026-03-11 18:48:59 (6052): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Mar 11 14:40 queuedata.json
2026-03-11 18:48:59 (6052): Guest Log: -rwx------. 1 atlas atlas   36322 Mar 11 14:40 runpilot2-wrapper.sh
2026-03-11 18:48:59 (6052): Guest Log: -rwxr-xr-x. 1 atlas atlas    6062 Mar 11 22:29 init_data.xml
2026-03-11 18:48:59 (6052): Guest Log: -rwxr-xr-x. 1 atlas atlas  597528 Mar 11 22:29 input.tar.gz
2026-03-11 18:48:59 (6052): Guest Log: -rwxr-xr-x. 1 atlas atlas   15845 Mar 11 22:29 start_atlas.sh
2026-03-11 18:49:00 (6052): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Mar 11 22:29 EVNT.48967008._000518.pool.root.1 -> /data/./ATLAS.root_0
2026-03-11 18:49:00 (6052): Guest Log: -rw-r--r--. 1 atlas atlas    2563 Mar 11 22:30 pandaJob.out
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas 1006243 Mar 11 22:34 agis_schedconf.cvmfs.json
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas 1511578 Mar 11 22:34 agis_ddmendpoints.agis.ALL.json
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas     432 Mar 11 22:34 workernode_map.json
2026-03-11 18:49:00 (6052): Guest Log: drwx------. 5 atlas atlas    4096 Mar 11 22:34 pilot3
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas   53008 Mar 11 22:46 log.48967011._013093.job.log.tgz.1
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas      95 Mar 11 22:48 pilot_heartbeat.json
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas    6786 Mar 11 22:48 heartbeat.json
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas    4801 Mar 11 22:48 pilotlog.txt
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas  185099 Mar 11 22:48 log.48967011._013093.job.log.1
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas     188 Mar 11 22:48 output.list
2026-03-11 18:49:00 (6052): Guest Log: -rw-r--r--. 1 atlas atlas     620 Mar 11 22:48 runtime_log
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas  256000 Mar 11 22:48 result.tar.gz
2026-03-11 18:49:00 (6052): Guest Log: -rw-------. 1 atlas atlas     652 Mar 11 22:48 TaSKDm0uZK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmdGhLDmx7oRNo.diag
2026-03-11 18:49:00 (6052): Guest Log: -rw-r--r--. 1 atlas atlas    8490 Mar 11 22:48 runtime_log.err
2026-03-11 18:49:00 (6052): Guest Log: Looking for outputfile HITS.48967011._013093.pool.root.1
2026-03-11 18:49:00 (6052): Guest Log: No HITS file was produced
2026-03-11 18:49:00 (6052): Guest Log: Successfully finished the ATLAS job!
2026-03-11 18:49:00 (6052): Guest Log: Copying the results back to the shared directory!
2026-03-11 18:49:00 (6052): Guest Log:  *** Contents of shared directory: ***
2026-03-11 18:49:00 (6052): Guest Log: total 214156
2026-03-11 18:49:00 (6052): Guest Log: -rwxrwxrwx. 1 root root 218411649 Mar 11 22:26 ATLAS.root_0
2026-03-11 18:49:00 (6052): Guest Log: -rwxrwxrwx. 1 root root      6062 Mar 11 22:26 init_data.xml
2026-03-11 18:49:00 (6052): Guest Log: -rwxrwxrwx. 1 root root    597528 Mar 11 18:34 input.tar.gz
2026-03-11 18:49:00 (6052): Guest Log: -rwxrwxrwx. 1 root root    256000 Mar 11 22:48 result.tar.gz
2026-03-11 18:49:00 (6052): Guest Log: -rwxrwxrwx. 1 root root     15845 Mar 11 18:34 start_atlas.sh
2026-03-11 18:49:01 (6052): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-11 18:49:01 (6052): VM Completion File Detected.
2026-03-11 18:49:01 (6052): Powering off VM.
2026-03-11 18:49:03 (6052): Successfully stopped VM.
2026-03-11 18:49:03 (6052): Deregistering VM. (boinc_54e79dcd71731ccc, slot#0)
2026-03-11 18:49:03 (6052): Removing network bandwidth throttle group from VM.
2026-03-11 18:49:03 (6052): Removing VM from VirtualBox.
2026-03-11 18:49:10 (6052): called boinc_finish(0)

</stderr_txt>
]]>

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