Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:52:23 (4145105): wrapper (7.7.26015): starting
15:52:23 (4145105): wrapper: running run_atlas (--nthreads 12)
[2026-03-11 15:52:23] Arguments: --nthreads 12
[2026-03-11 15:52:23] Threads: 12
[2026-03-11 15:52:23] Checking for CVMFS
[2026-03-11 15:52:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 15:52:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 15:52:23] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 15:52:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 15:52:25] 2.11.5.0 3810059 145000 243080 157173 0 328 41261217 45568001 26083 130560 0 927713565 99.812 537466486 18434 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2026-03-11 15:52:25] CVMFS is ok
[2026-03-11 15:52:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 15:52:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 15:52:25] Further information can be found at the LHC@home message board.
[2026-03-11 15:52:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 15:52:25] Checking for apptainer binary...
[2026-03-11 15:52:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 15:52:25] Running /usr/bin/apptainer --version
[2026-03-11 15:52:25] apptainer version 1.4.1-1.el9
[2026-03-11 15:52:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 15:52:26] wns0043.triumf.lcg
[2026-03-11 15:52:26] apptainer works
[2026-03-11 15:52:26] Set ATHENA_PROC_NUMBER=12
[2026-03-11 15:52:26] Set ATHENA_CORE_NUMBER=12
[2026-03-11 15:52:27] Starting ATLAS job with PandaID=7050075836
[2026-03-11 15:52:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 15:57:44]  *** The last 200 lines of the pilot log: ***
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 15:57:44] 2026-03-11 22:57:10,710 | WARNING  | wrong length of table data, x=[1773269680.0], y=[951.0] (must be same and length>=4)
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | could have reported an average CPU frequency of 1580 MHz (4 samples)
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | ..............................
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . Timing measurements:
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . get job = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . initial setup = 29 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . payload setup = 32 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . stage-in = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . payload execution = 56 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . stage-out = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . log creation = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | ..............................
[2026-03-11 15:57:44] 2026-03-11 22:57:10,712 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-11 15:57:44] 2026-03-11 22:57:10,712 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7050075836/pilotlog.txt
[2026-03-11 15:57:44] 2026-03-11 22:57:10,751 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-11 15:57:44] - Log from pilotlog.txt -
[2026-03-11 15:57:44] 2026-03-11 22:57:10,699 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7050075836/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | INFO     | extracted standard info from prmon json
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 15:57:44] 2026-03-11 22:57:10,710 | WARNING  | wrong length of table data, x=[1773269680.0], y=[951.0] (must be same and length>=4)
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | could have reported an average CPU frequency of 1580 MHz (4 samples)
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | ..............................
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . Timing measurements:
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . get job = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . initial setup = 29 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . payload setup = 32 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . stage-in = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . payload execution = 56 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . stage-out = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . log creation = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | ..............................
[2026-03-11 15:57:44] 2026-03-11 22:57:10,712 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-11 15:57:44] 2026-03-11 22:57:10,712 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7050075836/pilotlog.txt
[2026-03-11 15:57:44] 2026-03-11 22:57:10,752 | WARNING  | 
[2026-03-11 15:57:44] [begin log extracts]
[2026-03-11 15:57:44] - Log from pilotlog.txt -
[2026-03-11 15:57:44] 2026-03-11 22:57:10,699 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7050075836/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | INFO     | extracted standard info from prmon json
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 15:57:44] 2026-03-11 22:57:10,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 15:57:44] 2026-03-11 22:57:10,710 | WARNING  | wrong length of table data, x=[1773269680.0], y=[951.0] (must be same and length>=4)
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | could have reported an average CPU frequency of 1580 MHz (4 samples)
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | ..............................
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . Timing measurements:
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . get job = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . initial setup = 29 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . payload setup = 32 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . stage-in = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . payload execution = 56 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . stage-out = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | . log creation = 0 s
[2026-03-11 15:57:44] 2026-03-11 22:57:10,711 | INFO     | ..............................
[2026-03-11 15:57:44] 2026-03-11 22:57:10,712 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-11 15:57:44] 2026-03-11 22:57:10,712 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7050075836/pilotlog.txt
[2026-03-11 15:57:44] [end log extracts]
[2026-03-11 15:57:44] 2026-03-11 22:57:10,752 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-11 15:57:44] 2026-03-11 22:57:10,753 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-11 15:57:44] 2026-03-11 22:57:11,281 | INFO     | 
[2026-03-11 15:57:44] 2026-03-11 22:57:11,282 | INFO     | job summary report
[2026-03-11 15:57:44] 2026-03-11 22:57:11,282 | INFO     | --------------------------------------------------
[2026-03-11 15:57:44] 2026-03-11 22:57:11,282 | INFO     | PanDA job id: 7050075836
[2026-03-11 15:57:44] 2026-03-11 22:57:11,282 | INFO     | task id: 48967094
[2026-03-11 15:57:44] 2026-03-11 22:57:11,282 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-11 15:55:00,347 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | pilot state: failed 
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | transexitcode: 65
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | exeerrorcode: 65
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | exitcode: 65
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | cpuconsumptiontime: 21 s
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | nevents: 0
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | neventsw: 0
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | pid: 4153761
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | pgrp: 4153761
[2026-03-11 15:57:44] 2026-03-11 22:57:11,283 | INFO     | corecount: 12
[2026-03-11 15:57:44] 2026-03-11 22:57:11,284 | INFO     | event service: False
[2026-03-11 15:57:44] 2026-03-11 22:57:11,284 | INFO     | sizes: {0: 2279732, 1: 2279816, 2: 2280249, 3: 2280277, 94: 2303622, 95: 2303598, 96: 2308046, 98: 2308074, 214: 2308240}
[2026-03-11 15:57:44] 2026-03-11 22:57:11,284 | INFO     | --------------------------------------------------
[2026-03-11 15:57:44] 2026-03-11 22:57:11,284 | INFO     | 
[2026-03-11 15:57:44] 2026-03-11 22:57:11,284 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-11 15:57:44] 2026-03-11 22:57:11,404 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,405 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,405 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,405 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,405 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,405 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,405 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,405 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,405 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,405 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 15:57:44] 2026-03-11 22:57:11,406 | INFO     | job 7050075836 has completed (purged errors)
[2026-03-11 15:57:44] 2026-03-11 22:57:11,407 | INFO     | overall cleanup function is called
[2026-03-11 15:57:44] 2026-03-11 22:57:12,436 | INFO     | --- collectZombieJob: --- 10, [4153761]
[2026-03-11 15:57:44] 2026-03-11 22:57:12,436 | INFO     | zombie collector waiting for pid 4153761
[2026-03-11 15:57:44] 2026-03-11 22:57:12,436 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 15:57:44] 2026-03-11 22:57:12,436 | INFO     | collected zombie processes
[2026-03-11 15:57:44] 2026-03-11 22:57:12,436 | INFO     | will attempt to kill all subprocesses of pid=4153761
[2026-03-11 15:57:44] 2026-03-11 22:57:13,725 | INFO     | process IDs to be killed: [4153761] (in reverse order)
[2026-03-11 15:57:44] 2026-03-11 22:57:13,932 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 15:57:44] 2026-03-11 22:57:13,933 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 15:57:44] 2026-03-11 22:57:14,037 | INFO     | did not find any defunct processes belonging to 4153761
[2026-03-11 15:57:44] 2026-03-11 22:57:14,050 | INFO     | did not find any defunct processes belonging to 4153761
[2026-03-11 15:57:44] 2026-03-11 22:57:14,051 | INFO     | ready for new job
[2026-03-11 15:57:44] 2026-03-11 22:57:14,051 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 15:57:44] 2026-03-11 22:57:14,052 | INFO     | **************************************
[2026-03-11 15:57:44] 2026-03-11 22:57:14,053 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-11 15:57:44] 2026-03-11 22:57:14,053 | INFO     | **************************************
[2026-03-11 15:57:44] 2026-03-11 22:57:14,053 | INFO     | 
[2026-03-11 15:57:44] 2026-03-11 22:57:14,056 | INFO     | architecture information:
[2026-03-11 15:57:44] 2026-03-11 22:57:14,056 | INFO     | executing command: cat /etc/os-release
[2026-03-11 15:57:44] 2026-03-11 22:57:14,090 | INFO     | cat /etc/os-release:
[2026-03-11 15:57:44] NAME="CentOS Linux"
[2026-03-11 15:57:44] VERSION="7 (Core)"
[2026-03-11 15:57:44] ID="centos"
[2026-03-11 15:57:44] ID_LIKE="rhel fedora"
[2026-03-11 15:57:44] VERSION_ID="7"
[2026-03-11 15:57:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 15:57:44] ANSI_COLOR="0;31"
[2026-03-11 15:57:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 15:57:44] HOME_URL="https://www.centos.org/"
[2026-03-11 15:57:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 15:57:44] 
[2026-03-11 15:57:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 15:57:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 15:57:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 15:57:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 15:57:44] 
[2026-03-11 15:57:44] 2026-03-11 22:57:14,091 | INFO     | **************************************
[2026-03-11 15:57:44] 2026-03-11 22:57:14,595 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-11 15:57:44] 2026-03-11 22:57:14,712 | INFO     | sufficient remaining disk space (1933769179136 B)
[2026-03-11 15:57:44] 2026-03-11 22:57:14,712 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 15:57:44] 2026-03-11 22:57:14,712 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 15:57:44] 2026-03-11 22:57:14,712 | INFO     | update_server=False
[2026-03-11 15:57:44] 2026-03-11 22:57:14,712 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 15:57:44] 2026-03-11 22:57:14,713 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 15:57:44] 2026-03-11 22:57:14,713 | INFO     | aborting loop
[2026-03-11 15:57:44] 2026-03-11 22:57:14,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 15:57:44] 2026-03-11 22:57:14,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 15:57:44] 2026-03-11 22:57:14,922 | INFO     | all payload control threads have been joined
[2026-03-11 15:57:44] 2026-03-11 22:57:15,154 | INFO     | all job control threads have been joined
[2026-03-11 15:57:44] 2026-03-11 22:57:15,543 | INFO     | all data control threads have been joined
[2026-03-11 15:57:44] 2026-03-11 22:57:15,719 | INFO     | [job] job monitor thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:15,720 | INFO     | [job] retrieve thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:15,928 | INFO     | [payload] control thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:15,984 | INFO     | [job] validate thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:16,050 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:16,137 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:16,160 | INFO     | [job] control thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:16,294 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 15:57:44] 2026-03-11 22:57:16,363 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:16,549 | INFO     | [data] control thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:16,591 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:16,719 | INFO     | [payload] validate_post thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:16,720 | INFO     | [data] copytool_out thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:16,769 | INFO     | [data] copytool_in thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:17,107 | INFO     | [payload] failed_post thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:17,300 | INFO     | [job] queue monitor thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:18,738 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 15:57:44] 2026-03-11 22:57:33,104 | INFO     | [monitor] cgroup control has ended
[2026-03-11 15:57:44] 2026-03-11 22:57:33,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140334674048832)>', '<ExcThread(monitor, started 140334122116864)>']
[2026-03-11 15:57:44] 2026-03-11 22:57:38,681 | INFO     | all workflow threads have been joined
[2026-03-11 15:57:44] 2026-03-11 22:57:38,681 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 15:57:44] 2026-03-11 22:57:38,681 | INFO     | traces error code: 0
[2026-03-11 15:57:44] 2026-03-11 22:57:38,682 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 15:57:44] 2026-03-11 22:57:43,621 | INFO     | PID=4148957 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-11 15:57:44] 2026-03-11 22:57:43,622 | INFO     | .. there are 42 such processes running
[2026-03-11 15:57:44] 2026-03-11 22:57:43,622 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 15:57:44] 2026-03-11 22:57:43,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 15:57:44] 2026-03-11 22:57:43,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 15:57:44] 2026-03-11 22:57:43,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 15:57:44] 2026-03-11 22:57:43,622 | CRITICAL | thread 'MainThread' is not alive
[2026-03-11 15:57:44] 2026-03-11 22:57:43,623 | INFO     | [monitor] control thread has ended
[2026-03-11 15:57:44] 2026-03-11 22:57:43,775 [wrapper] ==== pilot stdout END ====
[2026-03-11 15:57:44] 2026-03-11 22:57:43,786 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 15:57:44] 2026-03-11 22:57:43,795 [wrapper] pilotpid: 4148957
[2026-03-11 15:57:44] 2026-03-11 22:57:43,803 [wrapper] Pilot exit status: 0
[2026-03-11 15:57:44] 2026-03-11 22:57:43,900 [wrapper] pandaids: 7050075836
[2026-03-11 15:57:44] 2026-03-11 22:57:44,059 [wrapper] cleanup supervisor_pilot 4148966 4148958
[2026-03-11 15:57:44] 2026-03-11 22:57:44,106 [wrapper] Test setup, not cleaning
[2026-03-11 15:57:44] 2026-03-11 22:57:44,138 [wrapper] apfmon messages muted
[2026-03-11 15:57:44] 2026-03-11 22:57:44,169 [wrapper] ==== wrapper stdout END ====
[2026-03-11 15:57:44] 2026-03-11 22:57:44,173 [wrapper] ==== wrapper stderr END ====
[2026-03-11 15:57:44]  *** Error codes and diagnostics ***
[2026-03-11 15:57:44]     "exeErrorCode": 65,
[2026-03-11 15:57:44]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-11 15:57:44]     "pilotErrorCode": 1305,
[2026-03-11 15:57:44]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-11 15:57:44]  *** Listing of results directory ***
[2026-03-11 15:57:44] total 218324
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc    585013 Mar 11 10:53 pilot3.tar.gz
[2026-03-11 15:57:44] -rwx------. 1 boinc boinc     36322 Mar 11 11:08 runpilot2-wrapper.sh
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc      5111 Mar 11 11:09 queuedata.json
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc       100 Mar 11 15:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 15:57:44] -rwxr-xr-x. 1 boinc boinc      7986 Mar 11 15:52 run_atlas
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc       105 Mar 11 15:52 job.xml
[2026-03-11 15:57:44] -rw-r--r--. 2 boinc boinc 219420464 Mar 11 15:52 EVNT.48967092._000147.pool.root.1
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc      6594 Mar 11 15:52 init_data.xml
[2026-03-11 15:57:44] -rw-r--r--. 2 boinc boinc     15845 Mar 11 15:52 start_atlas.sh
[2026-03-11 15:57:44] drwxrwx--x. 2 boinc boinc      4096 Mar 11 15:52 shared
[2026-03-11 15:57:44] -rw-r--r--. 2 boinc boinc    597533 Mar 11 15:52 input.tar.gz
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc         0 Mar 11 15:52 boinc_lockfile
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc      2597 Mar 11 15:52 pandaJob.out
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc   1006243 Mar 11 15:53 agis_schedconf.cvmfs.json
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc   1511578 Mar 11 15:53 agis_ddmendpoints.agis.ALL.json
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc       445 Mar 11 15:53 workernode_map.json
[2026-03-11 15:57:44] drwx------. 5 boinc boinc      4096 Mar 11 15:53 pilot3
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc       980 Mar 11 15:55 memory_monitor_summary.json
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc     21914 Mar 11 15:55 log.48967094._003216.job.log.tgz.1
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc        95 Mar 11 15:57 pilot_heartbeat.json
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc      7049 Mar 11 15:57 heartbeat.json
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc       524 Mar 11 15:57 boinc_task_state.xml
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc        23 Mar 11 15:57 wrapper_checkpoint.txt
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc       893 Mar 11 15:57 pilotlog.txt
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc      8192 Mar 11 15:57 boinc_mmap_file
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc     87503 Mar 11 15:57 log.48967094._003216.job.log.1
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc       188 Mar 11 15:57 output.list
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc       620 Mar 11 15:57 runtime_log
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc    122880 Mar 11 15:57 result.tar.gz
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc      8635 Mar 11 15:57 runtime_log.err
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc       643 Mar 11 15:57 qU3LDm39cK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmurhLDmK6BIsm.diag
[2026-03-11 15:57:44] -rw-r--r--. 1 boinc boinc     21794 Mar 11 15:57 stderr.txt
[2026-03-11 15:57:44] No HITS result produced
[2026-03-11 15:57:44]  *** Contents of shared directory: ***
[2026-03-11 15:57:44] total 215004
[2026-03-11 15:57:44] -rw-r--r--. 2 boinc boinc 219420464 Mar 11 15:52 ATLAS.root_0
[2026-03-11 15:57:44] -rw-r--r--. 2 boinc boinc     15845 Mar 11 15:52 start_atlas.sh
[2026-03-11 15:57:44] -rw-r--r--. 2 boinc boinc    597533 Mar 11 15:52 input.tar.gz
[2026-03-11 15:57:44] -rw-------. 1 boinc boinc    122880 Mar 11 15:57 result.tar.gz
15:57:46 (4145105): run_atlas exited; CPU time 33.245366
15:57:46 (4145105): called boinc_finish(0)

</stderr_txt>
]]>

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