Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:34:50 (12699): wrapper (7.7.26015): starting
09:34:50 (12699): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 09:34:50] Arguments: --nthreads 8
[2026-03-12 09:34:50] Threads: 8
[2026-03-12 09:34:50] Checking for CVMFS
[2026-03-12 09:34:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 09:34:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 09:34:51] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 09:34:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 09:34:53] 2.11.2.0 24551 124460 110472 157191 1 53 13359223 25165825 899 130560 161 37786983 99.834 26326382 894 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-12 09:34:53] CVMFS is ok
[2026-03-12 09:34:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 09:34:53] Checking for apptainer binary...
[2026-03-12 09:34:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 09:34:53] Running /usr/bin/apptainer --version
[2026-03-12 09:34:53] apptainer version 1.3.2-1.el7
[2026-03-12 09:34:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 09:35:01] cg-vwn415.simple-grid.lan
[2026-03-12 09:35:01] apptainer works
[2026-03-12 09:35:01] Set ATHENA_PROC_NUMBER=8
[2026-03-12 09:35:01] Set ATHENA_CORE_NUMBER=8
[2026-03-12 09:35:01] Starting ATLAS job with PandaID=7050075201
[2026-03-12 09:35:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 18:23:42]  *** The last 200 lines of the pilot log: ***
[2026-03-12 18:23:42] 2026-03-12 17:22:48,746 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7050075201/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 18:23:42] 2026-03-12 17:22:48,747 | INFO     | extracted standard info from prmon json
[2026-03-12 18:23:42] 2026-03-12 17:22:48,747 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 18:23:42] 2026-03-12 17:22:48,747 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 18:23:42] 2026-03-12 17:22:48,747 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 18:23:42] 2026-03-12 17:22:48,748 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 18:23:42] 2026-03-12 17:22:48,758 | INFO     | fitting pss+swap vs Time
[2026-03-12 18:23:42] 2026-03-12 17:22:48,759 | INFO     | sum of square deviations: 40650685907.0
[2026-03-12 18:23:42] 2026-03-12 17:22:48,779 | INFO     | sum of deviations: 331977857224.5002
[2026-03-12 18:23:42] 2026-03-12 17:22:48,779 | INFO     | mean x: 1773320647.5
[2026-03-12 18:23:42] 2026-03-12 17:22:48,780 | INFO     | mean y: 2478754.7303149607
[2026-03-12 18:23:42] 2026-03-12 17:22:48,780 | INFO     | intersect: -14479520148.703669
[2026-03-12 18:23:42] 2026-03-12 17:22:48,781 | INFO     | chi2: 8.369319027955175
[2026-03-12 18:23:42] 2026-03-12 17:22:48,782 | INFO     | sum of square deviations: 39462142692.0
[2026-03-12 18:23:42] 2026-03-12 17:22:48,789 | INFO     | sum of deviations: 362413699346.0001
[2026-03-12 18:23:42] 2026-03-12 17:22:48,790 | INFO     | mean x: 1773320495.0
[2026-03-12 18:23:42] 2026-03-12 17:22:48,790 | INFO     | mean y: 2482625.1133200796
[2026-03-12 18:23:42] 2026-03-12 17:22:48,790 | INFO     | intersect: -16283395355.083563
[2026-03-12 18:23:42] 2026-03-12 17:22:48,791 | INFO     | chi2: 7.634502315633177
[2026-03-12 18:23:42] 2026-03-12 17:22:48,791 | INFO     | current chi2=7.634502315633177 (change=8.779886510091986 %)
[2026-03-12 18:23:42] 2026-03-12 17:22:48,791 | INFO     | right removable region: 502
[2026-03-12 18:23:42] 2026-03-12 17:22:48,792 | INFO     | sum of square deviations: 39462142692.0
[2026-03-12 18:23:42] 2026-03-12 17:22:48,800 | INFO     | sum of deviations: 148941758065.0
[2026-03-12 18:23:42] 2026-03-12 17:22:48,800 | INFO     | mean x: 1773320800.0
[2026-03-12 18:23:42] 2026-03-12 17:22:48,800 | INFO     | mean y: 2502233.572564612
[2026-03-12 18:23:42] 2026-03-12 17:22:48,800 | INFO     | intersect: -6690533155.475799
[2026-03-12 18:23:42] 2026-03-12 17:22:48,801 | INFO     | chi2: 3.4992442139453646
[2026-03-12 18:23:42] 2026-03-12 17:22:48,801 | INFO     | current chi2=3.4992442139453646 (change=58.18961850710674 %)
[2026-03-12 18:23:42] 2026-03-12 17:22:48,802 | INFO     | sum of square deviations: 38296995264.5
[2026-03-12 18:23:42] 2026-03-12 17:22:48,812 | INFO     | sum of deviations: 13590547521.000015
[2026-03-12 18:23:42] 2026-03-12 17:22:48,813 | INFO     | mean x: 1773320952.5
[2026-03-12 18:23:42] 2026-03-12 17:22:48,813 | INFO     | mean y: 2519935.8674698793
[2026-03-12 18:23:42] 2026-03-12 17:22:48,813 | INFO     | intersect: -626782768.1302118
[2026-03-12 18:23:42] 2026-03-12 17:22:48,814 | INFO     | chi2: 0.9285868410860836
[2026-03-12 18:23:42] 2026-03-12 17:22:48,814 | INFO     | current chi2=0.9285868410860836 (change=73.46321707454906 %)
[2026-03-12 18:23:42] 2026-03-12 17:22:48,815 | INFO     | sum of square deviations: 37155011062.0
[2026-03-12 18:23:42] 2026-03-12 17:22:48,822 | INFO     | sum of deviations: -5710965912.000004
[2026-03-12 18:23:42] 2026-03-12 17:22:48,822 | INFO     | mean x: 1773321105.0
[2026-03-12 18:23:42] 2026-03-12 17:22:48,822 | INFO     | mean y: 2522504.2352941176
[2026-03-12 18:23:42] 2026-03-12 17:22:48,823 | INFO     | intersect: 275093446.67925626
[2026-03-12 18:23:42] 2026-03-12 17:22:48,823 | INFO     | chi2: 0.856715767847506
[2026-03-12 18:23:42] 2026-03-12 17:22:48,824 | INFO     | current chi2=0.856715767847506 (change=7.739833266915186 %)
[2026-03-12 18:23:42] 2026-03-12 17:22:48,824 | INFO     | left removable region: 30
[2026-03-12 18:23:42] 2026-03-12 17:22:48,824 | INFO     | sum of square deviations: 32606371358.0
[2026-03-12 18:23:42] 2026-03-12 17:22:48,831 | INFO     | sum of deviations: 50572886218.5
[2026-03-12 18:23:42] 2026-03-12 17:22:48,832 | INFO     | mean x: 1773321379.5
[2026-03-12 18:23:42] 2026-03-12 17:22:48,832 | INFO     | mean y: 2523588.5741525423
[2026-03-12 18:23:42] 2026-03-12 17:22:48,832 | INFO     | intersect: -2747919856.04065
[2026-03-12 18:23:42] 2026-03-12 17:22:48,833 | INFO     | chi2: 0.0018702087768455286
[2026-03-12 18:23:42] 2026-03-12 17:22:48,833 | INFO     | current memory leak: 1.55 B/s (using 472 data points, chi2=0.00)
[2026-03-12 18:23:42] 2026-03-12 17:22:48,834 | INFO     | could have reported an average CPU frequency of 1999 MHz (21 samples)
[2026-03-12 18:23:42] 2026-03-12 17:22:48,834 | INFO     | ..............................
[2026-03-12 18:23:42] 2026-03-12 17:22:48,834 | INFO     | . Timing measurements:
[2026-03-12 18:23:42] 2026-03-12 17:22:48,834 | INFO     | . get job = 0 s
[2026-03-12 18:23:42] 2026-03-12 17:22:48,834 | INFO     | . initial setup = 117 s
[2026-03-12 18:23:42] 2026-03-12 17:22:48,834 | INFO     | . payload setup = 153 s
[2026-03-12 18:23:42] 2026-03-12 17:22:48,835 | INFO     | . stage-in = 0 s
[2026-03-12 18:23:42] 2026-03-12 17:22:48,835 | INFO     | . payload execution = 31097 s
[2026-03-12 18:23:42] 2026-03-12 17:22:48,835 | INFO     | . stage-out = 4 s
[2026-03-12 18:23:42] 2026-03-12 17:22:48,835 | INFO     | . log creation = 1 s
[2026-03-12 18:23:42] 2026-03-12 17:22:48,835 | INFO     | ..............................
[2026-03-12 18:23:42] 2026-03-12 17:22:49,076 | INFO     | time since job start (31270s) is within the limit (345600.0s)
[2026-03-12 18:23:42] 2026-03-12 17:22:49,269 | INFO     | 
[2026-03-12 18:23:42] 2026-03-12 17:22:49,270 | INFO     | job summary report
[2026-03-12 18:23:42] 2026-03-12 17:22:49,270 | INFO     | --------------------------------------------------
[2026-03-12 18:23:42] 2026-03-12 17:22:49,270 | INFO     | PanDA job id: 7050075201
[2026-03-12 18:23:42] 2026-03-12 17:22:49,270 | INFO     | task id: 48966951
[2026-03-12 18:23:42] 2026-03-12 17:22:49,270 | INFO     | errors: (none)
[2026-03-12 18:23:42] 2026-03-12 17:22:49,270 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 18:23:42] 2026-03-12 17:22:49,270 | INFO     | pilot state: finished 
[2026-03-12 18:23:42] 2026-03-12 17:22:49,271 | INFO     | transexitcode: 0
[2026-03-12 18:23:42] 2026-03-12 17:22:49,271 | INFO     | exeerrorcode: 0
[2026-03-12 18:23:42] 2026-03-12 17:22:49,271 | INFO     | exeerrordiag: 
[2026-03-12 18:23:42] 2026-03-12 17:22:49,271 | INFO     | exitcode: 0
[2026-03-12 18:23:42] 2026-03-12 17:22:49,271 | INFO     | exitmsg: OK
[2026-03-12 18:23:42] 2026-03-12 17:22:49,271 | INFO     | cpuconsumptiontime: 127248 s
[2026-03-12 18:23:42] 2026-03-12 17:22:49,271 | INFO     | nevents: 400
[2026-03-12 18:23:42] 2026-03-12 17:22:49,271 | INFO     | neventsw: 0
[2026-03-12 18:23:42] 2026-03-12 17:22:49,272 | INFO     | pid: 21131
[2026-03-12 18:23:42] 2026-03-12 17:22:49,272 | INFO     | pgrp: 21131
[2026-03-12 18:23:42] 2026-03-12 17:22:49,272 | INFO     | corecount: 8
[2026-03-12 18:23:42] 2026-03-12 17:22:49,272 | INFO     | event service: False
[2026-03-12 18:23:42] 2026-03-12 17:22:49,272 | INFO     | sizes: {0: 2279714, 1: 2280171, 2: 2280259, 31255: 2318598, 31256: 2318597, 31262: 2327651, 31264: 2327835, 31267: 2328029}
[2026-03-12 18:23:42] 2026-03-12 17:22:49,272 | INFO     | --------------------------------------------------
[2026-03-12 18:23:42] 2026-03-12 17:22:49,272 | INFO     | 
[2026-03-12 18:23:42] 2026-03-12 17:22:49,272 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-03-12 18:23:42] 2026-03-12 17:22:49,789 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,789 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,789 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,790 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,790 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,790 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,790 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,790 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,790 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,790 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,790 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,790 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,791 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,791 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,791 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 18:23:42] 2026-03-12 17:22:49,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,792 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 18:23:42] 2026-03-12 17:22:49,792 | INFO     | job 7050075201 has completed (purged errors)
[2026-03-12 18:23:42] 2026-03-12 17:22:49,792 | INFO     | overall cleanup function is called
[2026-03-12 18:23:42] 2026-03-12 17:22:50,800 | INFO     | --- collectZombieJob: --- 10, [21131]
[2026-03-12 18:23:42] 2026-03-12 17:22:50,801 | INFO     | zombie collector waiting for pid 21131
[2026-03-12 18:23:42] 2026-03-12 17:22:50,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 18:23:42] 2026-03-12 17:22:50,801 | INFO     | collected zombie processes
[2026-03-12 18:23:42] 2026-03-12 17:22:50,801 | INFO     | will attempt to kill all subprocesses of pid=21131
[2026-03-12 18:23:42] 2026-03-12 17:22:50,885 | INFO     | process IDs to be killed: [21131] (in reverse order)
[2026-03-12 18:23:42] 2026-03-12 17:22:51,747 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 18:23:42] 2026-03-12 17:22:51,747 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 18:23:42] 2026-03-12 17:22:51,749 | INFO     | did not find any defunct processes belonging to 21131
[2026-03-12 18:23:42] 2026-03-12 17:22:51,751 | INFO     | did not find any defunct processes belonging to 21131
[2026-03-12 18:23:42] 2026-03-12 17:22:51,751 | INFO     | ready for new job
[2026-03-12 18:23:42] 2026-03-12 17:22:51,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 18:23:42] 2026-03-12 17:22:51,754 | INFO     | **************************************
[2026-03-12 18:23:42] 2026-03-12 17:22:51,755 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 18:23:42] 2026-03-12 17:22:51,755 | INFO     | **************************************
[2026-03-12 18:23:42] 2026-03-12 17:22:51,755 | INFO     | 
[2026-03-12 18:23:42] 2026-03-12 17:22:51,756 | INFO     | pilot is running in a VM
[2026-03-12 18:23:42] 2026-03-12 17:22:51,756 | INFO     | architecture information:
[2026-03-12 18:23:42] 2026-03-12 17:22:51,772 | INFO     | executing command: cat /etc/os-release
[2026-03-12 18:23:42] 2026-03-12 17:22:52,090 | INFO     | cat /etc/os-release:
[2026-03-12 18:23:42] NAME="CentOS Linux"
[2026-03-12 18:23:42] VERSION="7 (Core)"
[2026-03-12 18:23:42] ID="centos"
[2026-03-12 18:23:42] ID_LIKE="rhel fedora"
[2026-03-12 18:23:42] VERSION_ID="7"
[2026-03-12 18:23:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 18:23:42] ANSI_COLOR="0;31"
[2026-03-12 18:23:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 18:23:42] HOME_URL="https://www.centos.org/"
[2026-03-12 18:23:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 18:23:42] 
[2026-03-12 18:23:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 18:23:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 18:23:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 18:23:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 18:23:42] 
[2026-03-12 18:23:42] 2026-03-12 17:22:52,090 | INFO     | **************************************
[2026-03-12 18:23:42] 2026-03-12 17:22:52,594 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-03-12 18:23:42] 2026-03-12 17:22:52,732 | INFO     | sufficient remaining disk space (496144220160 B)
[2026-03-12 18:23:42] 2026-03-12 17:22:52,732 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 18:23:42] 2026-03-12 17:22:52,733 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 18:23:42] 2026-03-12 17:22:52,733 | INFO     | update_server=False
[2026-03-12 18:23:42] 2026-03-12 17:22:52,733 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 18:23:42] 2026-03-12 17:22:52,733 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 18:23:42] 2026-03-12 17:22:52,843 | INFO     | all payload control threads have been joined
[2026-03-12 18:23:42] 2026-03-12 17:22:53,112 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 18:23:42] 2026-03-12 17:22:53,113 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 18:23:42] 2026-03-12 17:22:53,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 18:23:42] 2026-03-12 17:22:53,113 | INFO     | will abort loop
[2026-03-12 18:23:42] 2026-03-12 17:22:53,520 | INFO     | all data control threads have been joined
[2026-03-12 18:23:42] 2026-03-12 17:22:53,739 | INFO     | [job] retrieve thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:53,850 | INFO     | [payload] control thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:53,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 18:23:42] 2026-03-12 17:22:54,067 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:54,119 | INFO     | [job] job monitor thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:54,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 18:23:42] 2026-03-12 17:22:54,178 | INFO     | [data] copytool_in thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:54,233 | INFO     | all job control threads have been joined
[2026-03-12 18:23:42] 2026-03-12 17:22:54,411 | INFO     | [payload] validate_post thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:54,429 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:54,527 | INFO     | [data] control thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:54,602 | INFO     | [payload] failed_post thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:54,706 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:54,978 | INFO     | [job] queue monitor thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:54,999 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:55,020 | INFO     | [job] validate thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:55,240 | INFO     | [job] control thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:56,151 | INFO     | [data] copytool_out thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:22:56,747 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 18:23:42] 2026-03-12 17:23:22,188 | INFO     | PID=16695 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 18:23:42] 2026-03-12 17:23:22,189 | INFO     | .. there are 2 such processes running
[2026-03-12 18:23:42] 2026-03-12 17:23:22,190 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 18:23:42] 2026-03-12 17:23:22,190 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 18:23:42] 2026-03-12 17:23:22,190 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 18:23:42] 2026-03-12 17:23:32,252 | INFO     | [monitor] cgroup control has ended
[2026-03-12 18:23:42] 2026-03-12 17:23:33,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140700007728960)>', '<ExcThread(monitor, started 140699429234432)>']
[2026-03-12 18:23:42] 2026-03-12 17:23:34,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 18:23:42] 2026-03-12 17:23:34,262 | INFO     | [monitor] control thread has ended
[2026-03-12 18:23:42] 2026-03-12 17:23:38,435 | INFO     | all workflow threads have been joined
[2026-03-12 18:23:42] 2026-03-12 17:23:38,436 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 18:23:42] 2026-03-12 17:23:38,436 | INFO     | traces error code: 0
[2026-03-12 18:23:42] 2026-03-12 17:23:38,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 18:23:42] 2026-03-12 17:23:38,785 [wrapper] ==== pilot stdout END ====
[2026-03-12 18:23:42] 2026-03-12 17:23:38,881 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 18:23:42] 2026-03-12 17:23:39,012 [wrapper] pilotpid: 16695
[2026-03-12 18:23:42] 2026-03-12 17:23:39,128 [wrapper] Pilot exit status: 0
[2026-03-12 18:23:42] 2026-03-12 17:23:39,703 [wrapper] pandaids: 7050075201
[2026-03-12 18:23:42] 2026-03-12 17:23:40,789 [wrapper] cleanup supervisor_pilot 11961 16696
[2026-03-12 18:23:42] 2026-03-12 17:23:40,867 [wrapper] Test setup, not cleaning
[2026-03-12 18:23:42] 2026-03-12 17:23:40,945 [wrapper] apfmon messages muted
[2026-03-12 18:23:42] 2026-03-12 17:23:41,068 [wrapper] ==== wrapper stdout END ====
[2026-03-12 18:23:42] 2026-03-12 17:23:41,183 [wrapper] ==== wrapper stderr END ====
[2026-03-12 18:23:42]  *** Error codes and diagnostics ***
[2026-03-12 18:23:42]     "exeErrorCode": 0,
[2026-03-12 18:23:42]     "exeErrorDiag": "",
[2026-03-12 18:23:42]     "pilotErrorCode": 0,
[2026-03-12 18:23:42]     "pilotErrorDiag": "",
[2026-03-12 18:23:42]  *** Listing of results directory ***
[2026-03-12 18:23:42] total 509308
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc    585013 Mar 11 18:53 pilot3.tar.gz
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc      5111 Mar 11 19:05 queuedata.json
[2026-03-12 18:23:42] -rwx------. 1 boinc boinc     36322 Mar 11 19:05 runpilot2-wrapper.sh
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc       100 Mar 12 09:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 18:23:42] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 09:34 run_atlas
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc       105 Mar 12 09:34 job.xml
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc      6391 Mar 12 09:34 init_data.xml
[2026-03-12 18:23:42] -rw-r--r--. 2 boinc boinc 235334822 Mar 12 09:34 EVNT.48966948._000095.pool.root.1
[2026-03-12 18:23:42] -rw-r--r--. 2 boinc boinc     15845 Mar 12 09:34 start_atlas.sh
[2026-03-12 18:23:42] drwxrwx--x. 2 boinc boinc        68 Mar 12 09:34 shared
[2026-03-12 18:23:42] -rw-r--r--. 2 boinc boinc    597515 Mar 12 09:34 input.tar.gz
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc         0 Mar 12 09:34 boinc_lockfile
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc      2538 Mar 12 09:35 pandaJob.out
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc       415 Mar 12 09:41 workernode_map.json
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc   1006243 Mar 12 09:41 agis_schedconf.cvmfs.json
[2026-03-12 18:23:42] drwx------. 5 boinc boinc      4096 Mar 12 09:41 pilot3
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc 272135599 Mar 12 18:21 HITS.48966951._002379.pool.root.1
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc       531 Mar 12 18:21 boinc_task_state.xml
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc      1021 Mar 12 18:22 memory_monitor_summary.json
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc   1511578 Mar 12 18:22 agis_ddmendpoints.agis.ALL.json
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc    692099 Mar 12 18:22 log.48966951._002379.job.log.tgz.1
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc      6324 Mar 12 18:22 heartbeat.json
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc      8192 Mar 12 18:23 boinc_mmap_file
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc        29 Mar 12 18:23 wrapper_checkpoint.txt
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc        95 Mar 12 18:23 pilot_heartbeat.json
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc      5066 Mar 12 18:23 pilotlog.txt
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc   4374667 Mar 12 18:23 log.48966951._002379.job.log.1
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc       357 Mar 12 18:23 output.list
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc       620 Mar 12 18:23 runtime_log
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc   5089280 Mar 12 18:23 result.tar.gz
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc      8816 Mar 12 18:23 runtime_log.err
[2026-03-12 18:23:42] -rw-------. 1 boinc boinc       658 Mar 12 18:23 houKDma7cK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmGnhLDmTNMYdm.diag
[2026-03-12 18:23:42] -rw-r--r--. 1 boinc boinc     20752 Mar 12 18:23 stderr.txt
[2026-03-12 18:23:43] HITS file was successfully produced:
[2026-03-12 18:23:43] -rw-------. 1 boinc boinc 272135599 Mar 12 18:21 shared/HITS.pool.root.1
[2026-03-12 18:23:43]  *** Contents of shared directory: ***
[2026-03-12 18:23:43] total 501152
[2026-03-12 18:23:43] -rw-r--r--. 2 boinc boinc 235334822 Mar 12 09:34 ATLAS.root_0
[2026-03-12 18:23:43] -rw-r--r--. 2 boinc boinc     15845 Mar 12 09:34 start_atlas.sh
[2026-03-12 18:23:43] -rw-r--r--. 2 boinc boinc    597515 Mar 12 09:34 input.tar.gz
[2026-03-12 18:23:43] -rw-------. 1 boinc boinc 272135599 Mar 12 18:21 HITS.pool.root.1
[2026-03-12 18:23:43] -rw-------. 1 boinc boinc   5089280 Mar 12 18:23 result.tar.gz
18:23:44 (12699): run_atlas exited; CPU time 127575.590331
18:23:44 (12699): called boinc_finish(0)

</stderr_txt>
]]>

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