Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:13:06 (31862): wrapper (7.7.26015): starting
06:13:06 (31862): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 06:13:06] Arguments: --nthreads 8
[2026-03-12 06:13:06] Threads: 8
[2026-03-12 06:13:06] Checking for CVMFS
[2026-03-12 06:13:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 06:13:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 06:13:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 06:13:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 06:13:11] 2.11.2.0 25223 22420 105952 157184 1 53 20383567 25165825 4837 130560 152 6570973 99.827 3188390 152 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-12 06:13:11] CVMFS is ok
[2026-03-12 06:13:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 06:13:11] Checking for apptainer binary...
[2026-03-12 06:13:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 06:13:11] Running /usr/bin/apptainer --version
[2026-03-12 06:13:11] apptainer version 1.3.2-1.el7
[2026-03-12 06:13:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 06:13:18] cg-vwn444.simple-grid.lan
[2026-03-12 06:13:18] apptainer works
[2026-03-12 06:13:18] Set ATHENA_PROC_NUMBER=8
[2026-03-12 06:13:18] Set ATHENA_CORE_NUMBER=8
[2026-03-12 06:13:18] Starting ATLAS job with PandaID=7050005234
[2026-03-12 06:13:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 11:57:17]  *** The last 200 lines of the pilot log: ***
[2026-03-12 11:57:17] 2026-03-12 10:56:31,072 | INFO     | total number of processed events: 400 (read)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,077 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7050005234/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,078 | INFO     | extracted standard info from prmon json
[2026-03-12 11:57:17] 2026-03-12 10:56:31,078 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 11:57:17] 2026-03-12 10:56:31,078 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 11:57:17] 2026-03-12 10:56:31,079 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 11:57:17] 2026-03-12 10:56:31,079 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 11:57:17] 2026-03-12 10:56:31,085 | INFO     | fitting pss+swap vs Time
[2026-03-12 11:57:17] 2026-03-12 10:56:31,086 | INFO     | sum of square deviations: 11042365180.0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,090 | INFO     | sum of deviations: 30485893749.999996
[2026-03-12 11:57:17] 2026-03-12 10:56:31,090 | INFO     | mean x: 1773302964.0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,090 | INFO     | mean y: 2508071.8419452887
[2026-03-12 11:57:17] 2026-03-12 10:56:31,090 | INFO     | intersect: -4893247942.909241
[2026-03-12 11:57:17] 2026-03-12 10:56:31,091 | INFO     | chi2: 6.984572911299567
[2026-03-12 11:57:17] 2026-03-12 10:56:31,091 | INFO     | sum of square deviations: 10546523325.0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,095 | INFO     | sum of deviations: 75320945020.49998
[2026-03-12 11:57:17] 2026-03-12 10:56:31,095 | INFO     | mean x: 1773302811.5
[2026-03-12 11:57:17] 2026-03-12 10:56:31,095 | INFO     | mean y: 2521733.651234568
[2026-03-12 11:57:17] 2026-03-12 10:56:31,095 | INFO     | intersect: -12662016091.15745
[2026-03-12 11:57:17] 2026-03-12 10:56:31,096 | INFO     | chi2: 5.417038531348257
[2026-03-12 11:57:17] 2026-03-12 10:56:31,096 | INFO     | current chi2=5.417038531348257 (change=22.442809315017247 %)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,096 | INFO     | right removable region: 323
[2026-03-12 11:57:17] 2026-03-12 10:56:31,097 | INFO     | sum of square deviations: 10546523325.0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,100 | INFO     | sum of deviations: -82159929337.50002
[2026-03-12 11:57:17] 2026-03-12 10:56:31,100 | INFO     | mean x: 1773303116.5
[2026-03-12 11:57:17] 2026-03-12 10:56:31,100 | INFO     | mean y: 2542690.1635802467
[2026-03-12 11:57:17] 2026-03-12 10:56:31,101 | INFO     | intersect: 13816996444.819128
[2026-03-12 11:57:17] 2026-03-12 10:56:31,101 | INFO     | chi2: 2.6843986671332436
[2026-03-12 11:57:17] 2026-03-12 10:56:31,101 | INFO     | current chi2=2.6843986671332436 (change=61.566745723414925 %)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,102 | INFO     | sum of square deviations: 10065751520.0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,105 | INFO     | sum of deviations: -120871814149.99998
[2026-03-12 11:57:17] 2026-03-12 10:56:31,105 | INFO     | mean x: 1773303269.0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,106 | INFO     | mean y: 2554896.379310345
[2026-03-12 11:57:17] 2026-03-12 10:56:31,106 | INFO     | intersect: 21296780442.90417
[2026-03-12 11:57:17] 2026-03-12 10:56:31,106 | INFO     | chi2: 1.923453713780439
[2026-03-12 11:57:17] 2026-03-12 10:56:31,106 | INFO     | current chi2=1.923453713780439 (change=28.346942749954586 %)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,107 | INFO     | sum of square deviations: 9599817202.5
[2026-03-12 11:57:17] 2026-03-12 10:56:31,110 | INFO     | sum of deviations: -115757396518.00002
[2026-03-12 11:57:17] 2026-03-12 10:56:31,110 | INFO     | mean x: 1773303421.5
[2026-03-12 11:57:17] 2026-03-12 10:56:31,111 | INFO     | mean y: 2553208.8598726112
[2026-03-12 11:57:17] 2026-03-12 10:56:31,111 | INFO     | intersect: 21385563216.159187
[2026-03-12 11:57:17] 2026-03-12 10:56:31,111 | INFO     | chi2: 1.9131679849611452
[2026-03-12 11:57:17] 2026-03-12 10:56:31,111 | INFO     | current chi2=1.9131679849611452 (change=0.5347531238003065 %)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,111 | INFO     | left removable region: 30
[2026-03-12 11:57:17] 2026-03-12 10:56:31,112 | INFO     | sum of square deviations: 7799669962.0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,115 | INFO     | sum of deviations: -41290597378.999985
[2026-03-12 11:57:17] 2026-03-12 10:56:31,115 | INFO     | mean x: 1773303696.0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,115 | INFO     | mean y: 2557674.5221843002
[2026-03-12 11:57:17] 2026-03-12 10:56:31,115 | INFO     | intersect: 9390232960.65099
[2026-03-12 11:57:17] 2026-03-12 10:56:31,116 | INFO     | chi2: 0.19202590645232442
[2026-03-12 11:57:17] 2026-03-12 10:56:31,116 | INFO     | current memory leak: -5.29 B/s (using 293 data points, chi2=0.19)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,117 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,117 | INFO     | ..............................
[2026-03-12 11:57:17] 2026-03-12 10:56:31,117 | INFO     | . Timing measurements:
[2026-03-12 11:57:17] 2026-03-12 10:56:31,117 | INFO     | . get job = 0 s
[2026-03-12 11:57:17] 2026-03-12 10:56:31,117 | INFO     | . initial setup = 107 s
[2026-03-12 11:57:17] 2026-03-12 10:56:31,117 | INFO     | . payload setup = 122 s
[2026-03-12 11:57:17] 2026-03-12 10:56:31,118 | INFO     | . stage-in = 0 s
[2026-03-12 11:57:17] 2026-03-12 10:56:31,118 | INFO     | . payload execution = 20143 s
[2026-03-12 11:57:17] 2026-03-12 10:56:31,118 | INFO     | . stage-out = 4 s
[2026-03-12 11:57:17] 2026-03-12 10:56:31,118 | INFO     | . log creation = 1 s
[2026-03-12 11:57:17] 2026-03-12 10:56:31,118 | INFO     | ..............................
[2026-03-12 11:57:17] 2026-03-12 10:56:31,374 | INFO     | 
[2026-03-12 11:57:17] 2026-03-12 10:56:31,374 | INFO     | job summary report
[2026-03-12 11:57:17] 2026-03-12 10:56:31,374 | INFO     | --------------------------------------------------
[2026-03-12 11:57:17] 2026-03-12 10:56:31,374 | INFO     | PanDA job id: 7050005234
[2026-03-12 11:57:17] 2026-03-12 10:56:31,374 | INFO     | task id: 48997926
[2026-03-12 11:57:17] 2026-03-12 10:56:31,374 | INFO     | errors: (none)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,375 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 11:57:17] 2026-03-12 10:56:31,375 | INFO     | pilot state: finished 
[2026-03-12 11:57:17] 2026-03-12 10:56:31,375 | INFO     | transexitcode: 0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,375 | INFO     | exeerrorcode: 0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,375 | INFO     | exeerrordiag: 
[2026-03-12 11:57:17] 2026-03-12 10:56:31,375 | INFO     | exitcode: 0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,375 | INFO     | exitmsg: OK
[2026-03-12 11:57:17] 2026-03-12 10:56:31,375 | INFO     | cpuconsumptiontime: 76771 s
[2026-03-12 11:57:17] 2026-03-12 10:56:31,375 | INFO     | nevents: 400
[2026-03-12 11:57:17] 2026-03-12 10:56:31,375 | INFO     | neventsw: 0
[2026-03-12 11:57:17] 2026-03-12 10:56:31,376 | INFO     | pid: 8113
[2026-03-12 11:57:17] 2026-03-12 10:56:31,376 | INFO     | pgrp: 8113
[2026-03-12 11:57:17] 2026-03-12 10:56:31,376 | INFO     | corecount: 8
[2026-03-12 11:57:17] 2026-03-12 10:56:31,376 | INFO     | event service: False
[2026-03-12 11:57:17] 2026-03-12 10:56:31,376 | INFO     | sizes: {0: 2279184, 1: 2279869, 2: 2280330, 20270: 2313546, 20275: 2322600, 20276: 2322738}
[2026-03-12 11:57:17] 2026-03-12 10:56:31,376 | INFO     | --------------------------------------------------
[2026-03-12 11:57:17] 2026-03-12 10:56:31,376 | INFO     | 
[2026-03-12 11:57:17] 2026-03-12 10:56:31,376 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-03-12 11:57:17] 2026-03-12 10:56:31,968 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,969 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,969 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,969 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,969 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,969 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,969 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,969 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,969 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,969 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,970 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,970 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,970 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,970 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,970 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,970 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,970 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,970 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,971 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 11:57:17] 2026-03-12 10:56:31,971 | INFO     | job 7050005234 has completed (purged errors)
[2026-03-12 11:57:17] 2026-03-12 10:56:31,971 | INFO     | overall cleanup function is called
[2026-03-12 11:57:17] 2026-03-12 10:56:32,127 | INFO     | PID=3612 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-12 11:57:17] 2026-03-12 10:56:32,128 | INFO     | .. there are 9 such processes running
[2026-03-12 11:57:17] 2026-03-12 10:56:32,980 | INFO     | --- collectZombieJob: --- 10, [8113]
[2026-03-12 11:57:17] 2026-03-12 10:56:32,980 | INFO     | zombie collector waiting for pid 8113
[2026-03-12 11:57:17] 2026-03-12 10:56:32,980 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 11:57:17] 2026-03-12 10:56:32,980 | INFO     | collected zombie processes
[2026-03-12 11:57:17] 2026-03-12 10:56:32,980 | INFO     | will attempt to kill all subprocesses of pid=8113
[2026-03-12 11:57:17] 2026-03-12 10:56:33,092 | INFO     | process IDs to be killed: [8113] (in reverse order)
[2026-03-12 11:57:17] 2026-03-12 10:56:33,927 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 11:57:17] 2026-03-12 10:56:33,927 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 11:57:17] 2026-03-12 10:56:33,931 | INFO     | did not find any defunct processes belonging to 8113
[2026-03-12 11:57:17] 2026-03-12 10:56:33,933 | INFO     | did not find any defunct processes belonging to 8113
[2026-03-12 11:57:17] 2026-03-12 10:56:33,933 | INFO     | ready for new job
[2026-03-12 11:57:17] 2026-03-12 10:56:33,934 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 11:57:17] 2026-03-12 10:56:33,936 | INFO     | **************************************
[2026-03-12 11:57:17] 2026-03-12 10:56:33,936 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 11:57:17] 2026-03-12 10:56:33,936 | INFO     | **************************************
[2026-03-12 11:57:17] 2026-03-12 10:56:33,936 | INFO     | 
[2026-03-12 11:57:17] 2026-03-12 10:56:33,937 | INFO     | pilot is running in a VM
[2026-03-12 11:57:17] 2026-03-12 10:56:33,937 | INFO     | architecture information:
[2026-03-12 11:57:17] 2026-03-12 10:56:33,951 | INFO     | executing command: cat /etc/os-release
[2026-03-12 11:57:17] 2026-03-12 10:56:34,294 | INFO     | cat /etc/os-release:
[2026-03-12 11:57:17] NAME="CentOS Linux"
[2026-03-12 11:57:17] VERSION="7 (Core)"
[2026-03-12 11:57:17] ID="centos"
[2026-03-12 11:57:17] ID_LIKE="rhel fedora"
[2026-03-12 11:57:17] VERSION_ID="7"
[2026-03-12 11:57:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 11:57:17] ANSI_COLOR="0;31"
[2026-03-12 11:57:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 11:57:17] HOME_URL="https://www.centos.org/"
[2026-03-12 11:57:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 11:57:17] 
[2026-03-12 11:57:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 11:57:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 11:57:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 11:57:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 11:57:17] 
[2026-03-12 11:57:17] 2026-03-12 10:56:34,295 | INFO     | **************************************
[2026-03-12 11:57:17] 2026-03-12 10:56:34,798 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-03-12 11:57:17] 2026-03-12 10:56:34,947 | INFO     | sufficient remaining disk space (496623419392 B)
[2026-03-12 11:57:17] 2026-03-12 10:56:34,947 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 11:57:17] 2026-03-12 10:56:34,947 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 11:57:17] 2026-03-12 10:56:34,947 | INFO     | update_server=False
[2026-03-12 11:57:17] 2026-03-12 10:56:34,948 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 11:57:17] 2026-03-12 10:56:35,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 11:57:17] 2026-03-12 10:56:35,320 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 11:57:17] 2026-03-12 10:56:35,320 | INFO     | aborting loop
[2026-03-12 11:57:17] 2026-03-12 10:56:35,657 | INFO     | all payload control threads have been joined
[2026-03-12 11:57:17] 2026-03-12 10:56:35,708 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 11:57:17] 2026-03-12 10:56:35,843 | INFO     | all data control threads have been joined
[2026-03-12 11:57:17] 2026-03-12 10:56:35,954 | INFO     | [job] retrieve thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:36,009 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:36,253 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 11:57:17] 2026-03-12 10:56:36,259 | INFO     | all job control threads have been joined
[2026-03-12 11:57:17] 2026-03-12 10:56:36,326 | INFO     | [job] job monitor thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:36,421 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:36,551 | INFO     | [payload] failed_post thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:36,566 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:36,646 | INFO     | [job] validate thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:36,662 | INFO     | [payload] control thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:36,810 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:36,849 | INFO     | [data] control thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:37,086 | INFO     | [data] copytool_out thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:37,238 | INFO     | [payload] validate_post thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:37,259 | INFO     | [job] queue monitor thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:37,265 | INFO     | [job] control thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:37,345 | INFO     | [data] copytool_in thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:56:39,717 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 11:57:17] 2026-03-12 10:57:04,303 | INFO     | PID=3612 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-12 11:57:17] 2026-03-12 10:57:04,303 | INFO     | .. there are 9 such processes running
[2026-03-12 11:57:17] 2026-03-12 10:57:04,304 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 11:57:17] 2026-03-12 10:57:04,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 11:57:17] 2026-03-12 10:57:04,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 11:57:17] 2026-03-12 10:57:06,761 | INFO     | [monitor] cgroup control has ended
[2026-03-12 11:57:17] 2026-03-12 10:57:07,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314315847488)>', '<ExcThread(monitor, started 140313888810752)>']
[2026-03-12 11:57:17] 2026-03-12 10:57:08,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 11:57:17] 2026-03-12 10:57:08,327 | INFO     | [monitor] control thread has ended
[2026-03-12 11:57:17] 2026-03-12 10:57:12,476 | INFO     | all workflow threads have been joined
[2026-03-12 11:57:17] 2026-03-12 10:57:12,476 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 11:57:17] 2026-03-12 10:57:12,476 | INFO     | traces error code: 0
[2026-03-12 11:57:17] 2026-03-12 10:57:12,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 11:57:17] 2026-03-12 10:57:12,789 [wrapper] ==== pilot stdout END ====
[2026-03-12 11:57:17] 2026-03-12 10:57:12,884 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 11:57:17] 2026-03-12 10:57:12,943 [wrapper] pilotpid: 3612
[2026-03-12 11:57:17] 2026-03-12 10:57:13,004 [wrapper] Pilot exit status: 0
[2026-03-12 11:57:17] 2026-03-12 10:57:13,434 [wrapper] pandaids: 7050005234
[2026-03-12 11:57:17] 2026-03-12 10:57:13,983 [wrapper] cleanup supervisor_pilot  8659 3613
[2026-03-12 11:57:17] 2026-03-12 10:57:14,080 [wrapper] Test setup, not cleaning
[2026-03-12 11:57:17] 2026-03-12 10:57:14,210 [wrapper] apfmon messages muted
[2026-03-12 11:57:17] 2026-03-12 10:57:14,307 [wrapper] ==== wrapper stdout END ====
[2026-03-12 11:57:17] 2026-03-12 10:57:14,406 [wrapper] ==== wrapper stderr END ====
[2026-03-12 11:57:17]  *** Error codes and diagnostics ***
[2026-03-12 11:57:17]     "exeErrorCode": 0,
[2026-03-12 11:57:17]     "exeErrorDiag": "",
[2026-03-12 11:57:17]     "pilotErrorCode": 0,
[2026-03-12 11:57:17]     "pilotErrorDiag": "",
[2026-03-12 11:57:17]  *** Listing of results directory ***
[2026-03-12 11:57:17] total 603076
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc      5111 Mar 11 18:00 queuedata.json
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc    585013 Mar 11 18:00 pilot3.tar.gz
[2026-03-12 11:57:17] -rwx------. 1 boinc boinc     36322 Mar 11 18:00 runpilot2-wrapper.sh
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc       100 Mar 12 06:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 11:57:17] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 06:13 run_atlas
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc       105 Mar 12 06:13 job.xml
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc      6391 Mar 12 06:13 init_data.xml
[2026-03-12 11:57:17] -rw-r--r--. 2 boinc boinc 339339793 Mar 12 06:13 EVNT.48997924._000102.pool.root.1
[2026-03-12 11:57:17] -rw-r--r--. 2 boinc boinc     15845 Mar 12 06:13 start_atlas.sh
[2026-03-12 11:57:17] drwxrwx--x. 2 boinc boinc        68 Mar 12 06:13 shared
[2026-03-12 11:57:17] -rw-r--r--. 2 boinc boinc    597523 Mar 12 06:13 input.tar.gz
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc         0 Mar 12 06:13 boinc_lockfile
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc      2593 Mar 12 06:13 pandaJob.out
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc       415 Mar 12 06:18 workernode_map.json
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc   1006243 Mar 12 06:18 agis_schedconf.cvmfs.json
[2026-03-12 11:57:17] drwx------. 5 boinc boinc      4096 Mar 12 06:18 pilot3
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc 267570767 Mar 12 11:54 HITS.48997926._002662.pool.root.1
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc       530 Mar 12 11:55 boinc_task_state.xml
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc      1020 Mar 12 11:56 memory_monitor_summary.json
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc   1511578 Mar 12 11:56 agis_ddmendpoints.agis.ALL.json
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc    556316 Mar 12 11:56 log.48997926._002662.job.log.tgz.1
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc      6319 Mar 12 11:56 heartbeat.json
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc      8192 Mar 12 11:56 boinc_mmap_file
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc        28 Mar 12 11:56 wrapper_checkpoint.txt
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc        95 Mar 12 11:57 pilot_heartbeat.json
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc      4879 Mar 12 11:57 pilotlog.txt
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc   2805003 Mar 12 11:57 log.48997926._002662.job.log.1
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc       357 Mar 12 11:57 output.list
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc       620 Mar 12 11:57 runtime_log
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc   3379200 Mar 12 11:57 result.tar.gz
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc      8816 Mar 12 11:57 runtime_log.err
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc       656 Mar 12 11:57 LF5LDmE6bK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmbMkLDmKKqq3m.diag
[2026-03-12 11:57:17] -rw-r--r--. 1 boinc boinc     20789 Mar 12 11:57 stderr.txt
[2026-03-12 11:57:17] HITS file was successfully produced:
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc 267570767 Mar 12 11:54 shared/HITS.pool.root.1
[2026-03-12 11:57:17]  *** Contents of shared directory: ***
[2026-03-12 11:57:17] total 596588
[2026-03-12 11:57:17] -rw-r--r--. 2 boinc boinc 339339793 Mar 12 06:13 ATLAS.root_0
[2026-03-12 11:57:17] -rw-r--r--. 2 boinc boinc     15845 Mar 12 06:13 start_atlas.sh
[2026-03-12 11:57:17] -rw-r--r--. 2 boinc boinc    597523 Mar 12 06:13 input.tar.gz
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc 267570767 Mar 12 11:54 HITS.pool.root.1
[2026-03-12 11:57:17] -rw-------. 1 boinc boinc   3379200 Mar 12 11:57 result.tar.gz
11:57:18 (31862): run_atlas exited; CPU time 77081.080799
11:57:18 (31862): called boinc_finish(0)

</stderr_txt>
]]>

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