Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:42:40 (31236): wrapper (7.7.26015): starting
07:42:40 (31236): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 07:42:40] Arguments: --nthreads 8
[2026-03-12 07:42:40] Threads: 8
[2026-03-12 07:42:40] Checking for CVMFS
[2026-03-12 07:42:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 07:42:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 07:42:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 07:42:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 07:42:44] 2.11.2.0 28971 124350 103020 157186 2 53 19252420 25165825 899 130560 153 43508810 99.844 30087667 1074 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-12 07:42:44] CVMFS is ok
[2026-03-12 07:42:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 07:42:44] Checking for apptainer binary...
[2026-03-12 07:42:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 07:42:44] Running /usr/bin/apptainer --version
[2026-03-12 07:42:44] apptainer version 1.3.2-1.el7
[2026-03-12 07:42:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 07:43:15] cg-vwn489.simple-grid.lan
[2026-03-12 07:43:15] apptainer works
[2026-03-12 07:43:15] Set ATHENA_PROC_NUMBER=8
[2026-03-12 07:43:15] Set ATHENA_CORE_NUMBER=8
[2026-03-12 07:43:15] Starting ATLAS job with PandaID=7036325377
[2026-03-12 07:43:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 12:50:33]  *** The last 200 lines of the pilot log: ***
[2026-03-12 12:50:33] 2026-03-12 11:49:55,931 | INFO     | job 7036325377 has finished - writing final server update
[2026-03-12 12:50:33] 2026-03-12 11:49:55,931 | INFO     | total number of processed events: 400 (read)
[2026-03-12 12:50:33] 2026-03-12 11:49:55,933 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-7036325377/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 12:50:33] 2026-03-12 11:49:55,934 | INFO     | extracted standard info from prmon json
[2026-03-12 12:50:33] 2026-03-12 11:49:55,934 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 12:50:33] 2026-03-12 11:49:55,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 12:50:33] 2026-03-12 11:49:55,934 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 12:50:33] 2026-03-12 11:49:55,934 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 12:50:33] 2026-03-12 11:49:55,940 | INFO     | fitting pss+swap vs Time
[2026-03-12 12:50:33] 2026-03-12 11:49:55,941 | INFO     | sum of square deviations: 7641036290.0
[2026-03-12 12:50:33] 2026-03-12 11:49:55,944 | INFO     | sum of deviations: 210131383214.0
[2026-03-12 12:50:33] 2026-03-12 11:49:55,944 | INFO     | mean x: 1773307302.0
[2026-03-12 12:50:33] 2026-03-12 11:49:55,944 | INFO     | mean y: 2462349.381443299
[2026-03-12 12:50:33] 2026-03-12 11:49:55,944 | INFO     | intersect: -48764158052.67222
[2026-03-12 12:50:33] 2026-03-12 11:49:55,945 | INFO     | chi2: 8.568842645094744
[2026-03-12 12:50:33] 2026-03-12 11:49:55,946 | INFO     | sum of square deviations: 7253894147.5
[2026-03-12 12:50:33] 2026-03-12 11:49:55,948 | INFO     | sum of deviations: 225767518002.49997
[2026-03-12 12:50:33] 2026-03-12 11:49:55,949 | INFO     | mean x: 1773307149.5
[2026-03-12 12:50:33] 2026-03-12 11:49:55,949 | INFO     | mean y: 2468400.388111888
[2026-03-12 12:50:33] 2026-03-12 11:49:55,949 | INFO     | intersect: -55189287318.391235
[2026-03-12 12:50:33] 2026-03-12 11:49:55,949 | INFO     | chi2: 7.84684308932804
[2026-03-12 12:50:33] 2026-03-12 11:49:55,950 | INFO     | current chi2=7.84684308932804 (change=8.425870163224605 %)
[2026-03-12 12:50:33] 2026-03-12 11:49:55,950 | INFO     | right removable region: 285
[2026-03-12 12:50:33] 2026-03-12 11:49:55,950 | INFO     | sum of square deviations: 7253894147.5
[2026-03-12 12:50:33] 2026-03-12 11:49:55,953 | INFO     | sum of deviations: 106992864302.00003
[2026-03-12 12:50:33] 2026-03-12 11:49:55,953 | INFO     | mean x: 1773307454.5
[2026-03-12 12:50:33] 2026-03-12 11:49:55,954 | INFO     | mean y: 2502956.916083916
[2026-03-12 12:50:33] 2026-03-12 11:49:55,954 | INFO     | intersect: -26153274889.72275
[2026-03-12 12:50:33] 2026-03-12 11:49:55,954 | INFO     | chi2: 3.6215470481331766
[2026-03-12 12:50:33] 2026-03-12 11:49:55,954 | INFO     | current chi2=3.6215470481331766 (change=57.73586704610172 %)
[2026-03-12 12:50:33] 2026-03-12 11:49:55,955 | INFO     | sum of square deviations: 6880054580.0
[2026-03-12 12:50:33] 2026-03-12 11:49:55,958 | INFO     | sum of deviations: 29238983111.999996
[2026-03-12 12:50:33] 2026-03-12 11:49:55,958 | INFO     | mean x: 1773307607.0
[2026-03-12 12:50:33] 2026-03-12 11:49:55,958 | INFO     | mean y: 2534638.8861209964
[2026-03-12 12:50:33] 2026-03-12 11:49:55,958 | INFO     | intersect: -7533700803.8062725
[2026-03-12 12:50:33] 2026-03-12 11:49:55,959 | INFO     | chi2: 1.009161129785634
[2026-03-12 12:50:33] 2026-03-12 11:49:55,959 | INFO     | current chi2=1.009161129785634 (change=72.13452934966472 %)
[2026-03-12 12:50:33] 2026-03-12 11:49:55,959 | INFO     | sum of square deviations: 6519285025.0
[2026-03-12 12:50:33] 2026-03-12 11:49:55,962 | INFO     | sum of deviations: 9156030917.499989
[2026-03-12 12:50:33] 2026-03-12 11:49:55,962 | INFO     | mean x: 1773307759.5
[2026-03-12 12:50:33] 2026-03-12 11:49:55,962 | INFO     | mean y: 2543108.8586956523
[2026-03-12 12:50:33] 2026-03-12 11:49:55,962 | INFO     | intersect: -2487984703.617893
[2026-03-12 12:50:33] 2026-03-12 11:49:55,963 | INFO     | chi2: 0.8441309901699797
[2026-03-12 12:50:33] 2026-03-12 11:49:55,963 | INFO     | current chi2=0.8441309901699797 (change=16.35320017237584 %)
[2026-03-12 12:50:33] 2026-03-12 11:49:55,963 | INFO     | left removable region: 30
[2026-03-12 12:50:33] 2026-03-12 11:49:55,964 | INFO     | sum of square deviations: 5141528960.0
[2026-03-12 12:50:33] 2026-03-12 11:49:55,966 | INFO     | sum of deviations: 11420160383.999992
[2026-03-12 12:50:33] 2026-03-12 11:49:55,966 | INFO     | mean x: 1773308034.0
[2026-03-12 12:50:33] 2026-03-12 11:49:55,966 | INFO     | mean y: 2558285.3647058825
[2026-03-12 12:50:33] 2026-03-12 11:49:55,966 | INFO     | intersect: -3936243249.3670387
[2026-03-12 12:50:33] 2026-03-12 11:49:55,967 | INFO     | chi2: 0.002201343115878857
[2026-03-12 12:50:33] 2026-03-12 11:49:55,967 | INFO     | current memory leak: 2.22 B/s (using 255 data points, chi2=0.00)
[2026-03-12 12:50:33] 2026-03-12 11:49:55,968 | INFO     | could have reported an average CPU frequency of 2249 MHz (13 samples)
[2026-03-12 12:50:33] 2026-03-12 11:49:55,968 | INFO     | ..............................
[2026-03-12 12:50:33] 2026-03-12 11:49:55,968 | INFO     | . Timing measurements:
[2026-03-12 12:50:33] 2026-03-12 11:49:55,968 | INFO     | . get job = 0 s
[2026-03-12 12:50:33] 2026-03-12 11:49:55,968 | INFO     | . initial setup = 127 s
[2026-03-12 12:50:33] 2026-03-12 11:49:55,968 | INFO     | . payload setup = 151 s
[2026-03-12 12:50:33] 2026-03-12 11:49:55,968 | INFO     | . stage-in = 0 s
[2026-03-12 12:50:33] 2026-03-12 11:49:55,968 | INFO     | . payload execution = 17851 s
[2026-03-12 12:50:33] 2026-03-12 11:49:55,969 | INFO     | . stage-out = 5 s
[2026-03-12 12:50:33] 2026-03-12 11:49:55,969 | INFO     | . log creation = 1 s
[2026-03-12 12:50:33] 2026-03-12 11:49:55,969 | INFO     | ..............................
[2026-03-12 12:50:33] 2026-03-12 11:49:56,178 | INFO     | 
[2026-03-12 12:50:33] 2026-03-12 11:49:56,179 | INFO     | job summary report
[2026-03-12 12:50:33] 2026-03-12 11:49:56,179 | INFO     | --------------------------------------------------
[2026-03-12 12:50:33] 2026-03-12 11:49:56,179 | INFO     | PanDA job id: 7036325377
[2026-03-12 12:50:33] 2026-03-12 11:49:56,179 | INFO     | task id: 48841707
[2026-03-12 12:50:33] 2026-03-12 11:49:56,179 | INFO     | errors: (none)
[2026-03-12 12:50:33] 2026-03-12 11:49:56,179 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 12:50:33] 2026-03-12 11:49:56,179 | INFO     | pilot state: finished 
[2026-03-12 12:50:33] 2026-03-12 11:49:56,179 | INFO     | transexitcode: 0
[2026-03-12 12:50:33] 2026-03-12 11:49:56,179 | INFO     | exeerrorcode: 0
[2026-03-12 12:50:33] 2026-03-12 11:49:56,179 | INFO     | exeerrordiag: 
[2026-03-12 12:50:33] 2026-03-12 11:49:56,180 | INFO     | exitcode: 0
[2026-03-12 12:50:33] 2026-03-12 11:49:56,180 | INFO     | exitmsg: OK
[2026-03-12 12:50:33] 2026-03-12 11:49:56,180 | INFO     | cpuconsumptiontime: 74908 s
[2026-03-12 12:50:33] 2026-03-12 11:49:56,180 | INFO     | nevents: 400
[2026-03-12 12:50:33] 2026-03-12 11:49:56,180 | INFO     | neventsw: 0
[2026-03-12 12:50:33] 2026-03-12 11:49:56,180 | INFO     | pid: 7252
[2026-03-12 12:50:33] 2026-03-12 11:49:56,180 | INFO     | pgrp: 7252
[2026-03-12 12:50:33] 2026-03-12 11:49:56,180 | INFO     | corecount: 8
[2026-03-12 12:50:33] 2026-03-12 11:49:56,180 | INFO     | event service: False
[2026-03-12 12:50:33] 2026-03-12 11:49:56,180 | INFO     | sizes: {0: 2278992, 1: 2279678, 2: 2280139, 18007: 2312388, 18008: 2312387, 18014: 2321765}
[2026-03-12 12:50:33] 2026-03-12 11:49:56,181 | INFO     | --------------------------------------------------
[2026-03-12 12:50:33] 2026-03-12 11:49:56,181 | INFO     | 
[2026-03-12 12:50:33] 2026-03-12 11:49:56,181 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-03-12 12:50:33] 2026-03-12 11:49:56,304 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,304 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,304 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,304 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,304 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,305 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,305 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,305 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,305 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,305 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,305 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,305 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,305 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,306 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,306 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,306 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,306 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,306 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 12:50:33] 2026-03-12 11:49:56,306 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,306 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 12:50:33] 2026-03-12 11:49:56,306 | INFO     | job 7036325377 has completed (purged errors)
[2026-03-12 12:50:33] 2026-03-12 11:49:56,307 | INFO     | overall cleanup function is called
[2026-03-12 12:50:33] 2026-03-12 11:49:57,314 | INFO     | --- collectZombieJob: --- 10, [7252]
[2026-03-12 12:50:33] 2026-03-12 11:49:57,315 | INFO     | zombie collector waiting for pid 7252
[2026-03-12 12:50:33] 2026-03-12 11:49:57,315 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 12:50:33] 2026-03-12 11:49:57,315 | INFO     | collected zombie processes
[2026-03-12 12:50:33] 2026-03-12 11:49:57,315 | INFO     | will attempt to kill all subprocesses of pid=7252
[2026-03-12 12:50:33] 2026-03-12 11:49:57,401 | INFO     | process IDs to be killed: [7252] (in reverse order)
[2026-03-12 12:50:33] 2026-03-12 11:49:58,101 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 12:50:33] 2026-03-12 11:49:58,101 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 12:50:33] 2026-03-12 11:49:58,103 | INFO     | did not find any defunct processes belonging to 7252
[2026-03-12 12:50:33] 2026-03-12 11:49:58,105 | INFO     | did not find any defunct processes belonging to 7252
[2026-03-12 12:50:33] 2026-03-12 11:49:58,105 | INFO     | ready for new job
[2026-03-12 12:50:33] 2026-03-12 11:49:58,106 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 12:50:33] 2026-03-12 11:49:58,108 | INFO     | **************************************
[2026-03-12 12:50:33] 2026-03-12 11:49:58,108 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 12:50:33] 2026-03-12 11:49:58,108 | INFO     | **************************************
[2026-03-12 12:50:33] 2026-03-12 11:49:58,108 | INFO     | 
[2026-03-12 12:50:33] 2026-03-12 11:49:58,109 | INFO     | pilot is running in a VM
[2026-03-12 12:50:33] 2026-03-12 11:49:58,109 | INFO     | architecture information:
[2026-03-12 12:50:33] 2026-03-12 11:49:58,114 | INFO     | executing command: cat /etc/os-release
[2026-03-12 12:50:33] 2026-03-12 11:49:58,421 | INFO     | cat /etc/os-release:
[2026-03-12 12:50:33] NAME="CentOS Linux"
[2026-03-12 12:50:33] VERSION="7 (Core)"
[2026-03-12 12:50:33] ID="centos"
[2026-03-12 12:50:33] ID_LIKE="rhel fedora"
[2026-03-12 12:50:33] VERSION_ID="7"
[2026-03-12 12:50:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 12:50:33] ANSI_COLOR="0;31"
[2026-03-12 12:50:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 12:50:33] HOME_URL="https://www.centos.org/"
[2026-03-12 12:50:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 12:50:33] 
[2026-03-12 12:50:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 12:50:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 12:50:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 12:50:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 12:50:33] 
[2026-03-12 12:50:33] 2026-03-12 11:49:58,421 | INFO     | **************************************
[2026-03-12 12:50:33] 2026-03-12 11:49:58,924 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-03-12 12:50:33] 2026-03-12 11:49:59,128 | INFO     | sufficient remaining disk space (497721278464 B)
[2026-03-12 12:50:33] 2026-03-12 11:49:59,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 12:50:33] 2026-03-12 11:49:59,129 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 12:50:33] 2026-03-12 11:49:59,129 | INFO     | update_server=False
[2026-03-12 12:50:33] 2026-03-12 11:49:59,129 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 12:50:33] 2026-03-12 11:49:59,132 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 12:50:33] 2026-03-12 11:49:59,133 | INFO     | aborting loop
[2026-03-12 12:50:33] 2026-03-12 11:49:59,140 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 12:50:33] 2026-03-12 11:49:59,288 | INFO     | all job control threads have been joined
[2026-03-12 12:50:33] 2026-03-12 11:49:59,335 | INFO     | all payload control threads have been joined
[2026-03-12 12:50:33] 2026-03-12 11:49:59,352 | INFO     | all data control threads have been joined
[2026-03-12 12:50:33] 2026-03-12 11:50:00,135 | INFO     | [job] retrieve thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,138 | INFO     | [job] job monitor thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,294 | INFO     | [job] control thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,341 | INFO     | [payload] control thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,358 | INFO     | [data] control thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,531 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,548 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,665 | INFO     | [payload] validate_post thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,761 | INFO     | [payload] failed_post thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,807 | INFO     | [job] validate thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,859 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:00,918 | INFO     | [data] copytool_in thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:01,003 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:01,107 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 12:50:33] 2026-03-12 11:50:01,146 | INFO     | [data] copytool_out thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:01,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 12:50:33] 2026-03-12 11:50:02,113 | INFO     | [job] queue monitor thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:05,948 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 12:50:33] 2026-03-12 11:50:10,304 | INFO     | [monitor] cgroup control has ended
[2026-03-12 12:50:33] 2026-03-12 11:50:10,991 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140447241639744)>', '<ExcThread(monitor, started 140446495926016)>']
[2026-03-12 12:50:33] 2026-03-12 11:50:16,017 | INFO     | all workflow threads have been joined
[2026-03-12 12:50:33] 2026-03-12 11:50:16,018 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 12:50:33] 2026-03-12 11:50:16,018 | INFO     | traces error code: 0
[2026-03-12 12:50:33] 2026-03-12 11:50:16,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 12:50:33] 2026-03-12 11:50:28,931 | INFO     | PID=2825 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-12 12:50:33] 2026-03-12 11:50:28,931 | INFO     | .. there are 2 such processes running
[2026-03-12 12:50:33] 2026-03-12 11:50:28,932 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 12:50:33] 2026-03-12 11:50:28,932 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 12:50:33] 2026-03-12 11:50:28,932 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 12:50:33] 2026-03-12 11:50:28,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 12:50:33] 2026-03-12 11:50:28,933 | CRITICAL | thread 'MainThread' is not alive
[2026-03-12 12:50:33] 2026-03-12 11:50:28,933 | INFO     | [monitor] control thread has ended
[2026-03-12 12:50:33] 2026-03-12 11:50:29,473 [wrapper] ==== pilot stdout END ====
[2026-03-12 12:50:33] 2026-03-12 11:50:29,557 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 12:50:33] 2026-03-12 11:50:29,666 [wrapper] pilotpid: 2825
[2026-03-12 12:50:33] 2026-03-12 11:50:29,764 [wrapper] Pilot exit status: 0
[2026-03-12 12:50:33] 2026-03-12 11:50:30,300 [wrapper] pandaids: 7036325377
[2026-03-12 12:50:33] 2026-03-12 11:50:31,087 [wrapper] cleanup supervisor_pilot 29536 2826
[2026-03-12 12:50:33] 2026-03-12 11:50:31,173 [wrapper] Test setup, not cleaning
[2026-03-12 12:50:33] 2026-03-12 11:50:31,266 [wrapper] apfmon messages muted
[2026-03-12 12:50:33] 2026-03-12 11:50:31,357 [wrapper] ==== wrapper stdout END ====
[2026-03-12 12:50:33] 2026-03-12 11:50:31,444 [wrapper] ==== wrapper stderr END ====
[2026-03-12 12:50:33]  *** Error codes and diagnostics ***
[2026-03-12 12:50:33]     "exeErrorCode": 0,
[2026-03-12 12:50:33]     "exeErrorDiag": "",
[2026-03-12 12:50:33]     "pilotErrorCode": 0,
[2026-03-12 12:50:33]     "pilotErrorDiag": "",
[2026-03-12 12:50:33]  *** Listing of results directory ***
[2026-03-12 12:50:33] total 570836
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc      5111 Mar  3 14:35 queuedata.json
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc    584627 Mar  3 14:35 pilot3.tar.gz
[2026-03-12 12:50:33] -rwx------. 1 boinc boinc     36322 Mar  3 14:36 runpilot2-wrapper.sh
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc       100 Mar 12 07:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 12:50:33] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 07:42 run_atlas
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc       105 Mar 12 07:42 job.xml
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc      6391 Mar 12 07:42 init_data.xml
[2026-03-12 12:50:33] -rw-r--r--. 2 boinc boinc 313296925 Mar 12 07:42 EVNT.48252644._000079.pool.root.1
[2026-03-12 12:50:33] -rw-r--r--. 2 boinc boinc     15845 Mar 12 07:42 start_atlas.sh
[2026-03-12 12:50:33] drwxrwx--x. 2 boinc boinc        68 Mar 12 07:42 shared
[2026-03-12 12:50:33] -rw-r--r--. 2 boinc boinc    597939 Mar 12 07:42 input.tar.gz
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc         0 Mar 12 07:42 boinc_lockfile
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc      2491 Mar 12 07:43 pandaJob.out
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc       415 Mar 12 07:49 workernode_map.json
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc   1006243 Mar 12 07:49 agis_schedconf.cvmfs.json
[2026-03-12 12:50:33] drwx------. 5 boinc boinc      4096 Mar 12 07:49 pilot3
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc 261252830 Mar 12 12:48 HITS.48841707._002023.pool.root.1
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc       531 Mar 12 12:48 boinc_task_state.xml
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc      1020 Mar 12 12:49 memory_monitor_summary.json
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc   1511578 Mar 12 12:49 agis_ddmendpoints.agis.ALL.json
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc    501410 Mar 12 12:49 log.48841707._002023.job.log.tgz.1
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc      6323 Mar 12 12:49 heartbeat.json
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc      8192 Mar 12 12:50 boinc_mmap_file
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc        28 Mar 12 12:50 wrapper_checkpoint.txt
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc        95 Mar 12 12:50 pilot_heartbeat.json
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc       889 Mar 12 12:50 pilotlog.txt
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc   2534685 Mar 12 12:50 log.48841707._002023.job.log.1
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc       357 Mar 12 12:50 output.list
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc       620 Mar 12 12:50 runtime_log
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc   3051520 Mar 12 12:50 result.tar.gz
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc       656 Mar 12 12:50 z40KDmz5eH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmDbGLDmx1UTPm.diag
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc      8832 Mar 12 12:50 runtime_log.err
[2026-03-12 12:50:33] -rw-r--r--. 1 boinc boinc     20673 Mar 12 12:50 stderr.txt
[2026-03-12 12:50:33] HITS file was successfully produced:
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc 261252830 Mar 12 12:48 shared/HITS.pool.root.1
[2026-03-12 12:50:33]  *** Contents of shared directory: ***
[2026-03-12 12:50:33] total 564668
[2026-03-12 12:50:33] -rw-r--r--. 2 boinc boinc 313296925 Mar 12 07:42 ATLAS.root_0
[2026-03-12 12:50:33] -rw-r--r--. 2 boinc boinc     15845 Mar 12 07:42 start_atlas.sh
[2026-03-12 12:50:33] -rw-r--r--. 2 boinc boinc    597939 Mar 12 07:42 input.tar.gz
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc 261252830 Mar 12 12:48 HITS.pool.root.1
[2026-03-12 12:50:33] -rw-------. 1 boinc boinc   3051520 Mar 12 12:50 result.tar.gz
12:50:35 (31236): run_atlas exited; CPU time 75084.766213
12:50:35 (31236): called boinc_finish(0)

</stderr_txt>
]]>

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