Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:22:05 (3242208): wrapper (7.7.26015): starting
08:22:05 (3242208): wrapper: running run_atlas (--nthreads 3)
[2026-03-12 08:22:05] Arguments: --nthreads 3
[2026-03-12 08:22:05] Threads: 3
[2026-03-12 08:22:05] Checking for CVMFS
[2026-03-12 08:22:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 08:22:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 08:22:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 08:22:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 08:22:05] 2.9.2.0 85582 21098 89764 157188 3 50 24629912 36864001 0 130560 0 8367142 99.982 789640 12918 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 08:22:05] CVMFS is ok
[2026-03-12 08:22:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 08:22:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 08:22:05] Further information can be found at the LHC@home message board.
[2026-03-12 08:22:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 08:22:05] Checking for apptainer binary...
[2026-03-12 08:22:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 08:22:05] Running /usr/bin/apptainer --version
[2026-03-12 08:22:05] apptainer version 1.4.1-1.1
[2026-03-12 08:22:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 08:22:05] thA305
[2026-03-12 08:22:05] apptainer works
[2026-03-12 08:22:05] Set ATHENA_PROC_NUMBER=3
[2026-03-12 08:22:05] Set ATHENA_CORE_NUMBER=3
[2026-03-12 08:22:06] Starting ATLAS job with PandaID=7036277415
[2026-03-12 08:22:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 10:03:41]  *** The last 200 lines of the pilot log: ***
[2026-03-12 10:03:41] 2026-03-12 09:03:09,502 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 10:03:41] 2026-03-12 09:03:09,502 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 10:03:41] 2026-03-12 09:03:09,502 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 10:03:41] 2026-03-12 09:03:09,502 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 10:03:41] 2026-03-12 09:03:09,502 | INFO     | job 7036277415 has completed (purged errors)
[2026-03-12 10:03:41] 2026-03-12 09:03:09,502 | INFO     | overall cleanup function is called
[2026-03-12 10:03:41] 2026-03-12 09:03:10,508 | INFO     | --- collectZombieJob: --- 10, [3250670]
[2026-03-12 10:03:41] 2026-03-12 09:03:10,508 | INFO     | zombie collector waiting for pid 3250670
[2026-03-12 10:03:41] 2026-03-12 09:03:10,508 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 10:03:41] 2026-03-12 09:03:10,509 | INFO     | collected zombie processes
[2026-03-12 10:03:41] 2026-03-12 09:03:10,509 | INFO     | will attempt to kill all subprocesses of pid=3250670
[2026-03-12 10:03:41] 2026-03-12 09:03:10,558 | INFO     | process IDs to be killed: [3250670] (in reverse order)
[2026-03-12 10:03:41] 2026-03-12 09:03:10,584 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 10:03:41] 2026-03-12 09:03:10,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 10:03:41] 2026-03-12 09:03:10,586 | INFO     | did not find any defunct processes belonging to 3250670
[2026-03-12 10:03:41] 2026-03-12 09:03:10,587 | INFO     | did not find any defunct processes belonging to 3250670
[2026-03-12 10:03:41] 2026-03-12 09:03:10,587 | INFO     | ready for new job
[2026-03-12 10:03:41] 2026-03-12 09:03:10,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 10:03:41] 2026-03-12 09:03:10,588 | INFO     | **************************************
[2026-03-12 10:03:41] 2026-03-12 09:03:10,588 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 10:03:41] 2026-03-12 09:03:10,588 | INFO     | **************************************
[2026-03-12 10:03:41] 2026-03-12 09:03:10,588 | INFO     | 
[2026-03-12 10:03:41] 2026-03-12 09:03:10,588 | INFO     | architecture information:
[2026-03-12 10:03:41] 2026-03-12 09:03:10,589 | INFO     | executing command: cat /etc/os-release
[2026-03-12 10:03:41] 2026-03-12 09:03:10,597 | INFO     | cat /etc/os-release:
[2026-03-12 10:03:41] NAME="CentOS Linux"
[2026-03-12 10:03:41] VERSION="7 (Core)"
[2026-03-12 10:03:41] ID="centos"
[2026-03-12 10:03:41] ID_LIKE="rhel fedora"
[2026-03-12 10:03:41] VERSION_ID="7"
[2026-03-12 10:03:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 10:03:41] ANSI_COLOR="0;31"
[2026-03-12 10:03:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 10:03:41] HOME_URL="https://www.centos.org/"
[2026-03-12 10:03:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 10:03:41] 
[2026-03-12 10:03:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 10:03:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 10:03:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 10:03:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 10:03:41] 
[2026-03-12 10:03:41] 2026-03-12 09:03:10,598 | INFO     | **************************************
[2026-03-12 10:03:41] 2026-03-12 09:03:11,101 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 10:03:41] 2026-03-12 09:03:11,114 | INFO     | sufficient remaining disk space (234663968768 B)
[2026-03-12 10:03:41] 2026-03-12 09:03:11,114 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 10:03:41] 2026-03-12 09:03:11,114 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 10:03:41] 2026-03-12 09:03:11,114 | INFO     | update_server=False
[2026-03-12 10:03:41] 2026-03-12 09:03:11,114 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 10:03:41] 2026-03-12 09:03:11,114 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 10:03:41] 2026-03-12 09:03:11,114 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 10:03:41] 2026-03-12 09:03:11,259 | INFO     | all data control threads have been joined
[2026-03-12 10:03:41] 2026-03-12 09:03:11,937 | WARNING  | process 3250670 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 10:03:41] 2026-03-12 09:03:11,971 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 10:03:41] 2026-03-12 09:03:12,013 | INFO     | number of running child processes to parent process 3250670: 1
[2026-03-12 10:03:41] 2026-03-12 09:03:12,013 | INFO     | maximum number of monitored processes: 6
[2026-03-12 10:03:41] 2026-03-12 09:03:12,013 | INFO     | aborting job monitoring since job object (job id=7036277415) has expired
[2026-03-12 10:03:41] 2026-03-12 09:03:12,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 10:03:41] 2026-03-12 09:03:12,013 | INFO     | will abort loop
[2026-03-12 10:03:41] 2026-03-12 09:03:12,117 | INFO     | [job] retrieve thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:12,120 | INFO     | [job] queue monitor thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:12,126 | INFO     | [payload] validate_post thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:12,127 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 10:03:41] 2026-03-12 09:03:12,137 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:12,216 | INFO     | [data] copytool_in thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:12,226 | INFO     | all payload control threads have been joined
[2026-03-12 10:03:41] 2026-03-12 09:03:12,265 | INFO     | [data] control thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:12,296 | INFO     | all job control threads have been joined
[2026-03-12 10:03:41] 2026-03-12 09:03:12,395 | INFO     | [payload] failed_post thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:12,727 | INFO     | job.realtimelogging is not enabled
[2026-03-12 10:03:41] 2026-03-12 09:03:13,019 | INFO     | [job] job monitor thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:13,232 | INFO     | [payload] control thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:13,302 | INFO     | [job] control thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:13,302 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:13,501 | INFO     | [job] validate thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:13,528 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:13,733 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:14,133 | INFO     | [data] copytool_out thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:15,121 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 10:03:41] 2026-03-12 09:03:22,205 | INFO     | [monitor] cgroup control has ended
[2026-03-12 10:03:41] 2026-03-12 09:03:22,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140242848384832)>', '<ExcThread(monitor, started 140242182973184)>']
[2026-03-12 10:03:41] 2026-03-12 09:03:27,338 | INFO     | all workflow threads have been joined
[2026-03-12 10:03:41] 2026-03-12 09:03:27,339 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 10:03:41] 2026-03-12 09:03:27,339 | INFO     | traces error code: 0
[2026-03-12 10:03:41] 2026-03-12 09:03:27,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 10:03:41] 2026-03-12 09:03:41,706 | INFO     | PID=3246246 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 10:03:41] 2026-03-12 09:03:41,706 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 10:03:41] 2026-03-12 09:03:41,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 10:03:41] 2026-03-12 09:03:41,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 10:03:41] 2026-03-12 09:03:41,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 10:03:41] 2026-03-12 09:03:41,706 | INFO     | [monitor] control thread has ended
[2026-03-12 10:03:41] 2026-03-12 09:03:41,752 [wrapper] ==== pilot stdout END ====
[2026-03-12 10:03:41] 2026-03-12 09:03:41,754 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 10:03:41] 2026-03-12 09:03:41,757 [wrapper] pilotpid: 3246246
[2026-03-12 10:03:41] 2026-03-12 09:03:41,759 [wrapper] Pilot exit status: 0
[2026-03-12 10:03:41] 2026-03-12 09:03:41,766 [wrapper] pandaids: 7036277415
[2026-03-12 10:03:41] 2026-03-12 09:03:41,783 [wrapper] cleanup supervisor_pilot 3256746 3246247
[2026-03-12 10:03:41] 2026-03-12 09:03:41,785 [wrapper] Test setup, not cleaning
[2026-03-12 10:03:41] 2026-03-12 09:03:41,788 [wrapper] apfmon messages muted
[2026-03-12 10:03:41] 2026-03-12 09:03:41,790 [wrapper] ==== wrapper stdout END ====
[2026-03-12 10:03:41] 2026-03-12 09:03:41,792 [wrapper] ==== wrapper stderr END ====
[2026-03-12 10:03:41]  *** Error codes and diagnostics ***
[2026-03-12 10:03:41]     "exeErrorCode": 0,
[2026-03-12 10:03:41]     "exeErrorDiag": "",
[2026-03-12 10:03:41]     "pilotErrorCode": 0,
[2026-03-12 10:03:41]     "pilotErrorDiag": "",
[2026-03-12 10:03:41]  *** Listing of results directory ***
[2026-03-12 10:03:41] total 510696
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc      5111 Mar  3 12:44 queuedata.json
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc    584627 Mar  3 12:44 pilot3.tar.gz
[2026-03-12 10:03:41] -rwx------ 1 boinc boinc     36322 Mar  3 12:44 runpilot2-wrapper.sh
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc       100 Mar 12 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 10:03:41] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 08:22 run_atlas
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc       105 Mar 12 08:22 job.xml
[2026-03-12 10:03:41] -rw-r--r-- 2 boinc boinc 285883484 Mar 12 08:22 EVNT.48220205._000227.pool.root.1
[2026-03-12 10:03:41] -rw-r--r-- 2 boinc boinc    597966 Mar 12 08:22 input.tar.gz
[2026-03-12 10:03:41] -rw-r--r-- 2 boinc boinc     15845 Mar 12 08:22 start_atlas.sh
[2026-03-12 10:03:41] drwxrwx--x 2 boinc boinc      4096 Mar 12 08:22 shared
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc         0 Mar 12 08:22 boinc_setup_complete
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc      6439 Mar 12 08:22 init_data.xml
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc         0 Mar 12 08:22 boinc_lockfile
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc      2585 Mar 12 08:22 pandaJob.out
[2026-03-12 10:03:41] -rw------- 1 boinc boinc   1006243 Mar 12 08:22 agis_schedconf.cvmfs.json
[2026-03-12 10:03:41] -rw------- 1 boinc boinc   1511578 Mar 12 08:22 agis_ddmendpoints.agis.ALL.json
[2026-03-12 10:03:41] -rw------- 1 boinc boinc       427 Mar 12 08:22 workernode_map.json
[2026-03-12 10:03:41] drwx------ 5 boinc boinc      4096 Mar 12 08:22 pilot3
[2026-03-12 10:03:41] -rw------- 1 boinc boinc        95 Mar 12 10:02 pilot_heartbeat.json
[2026-03-12 10:03:41] -rw------- 1 boinc boinc 230893174 Mar 12 10:02 HITS.48838581._005444.pool.root.1
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc       529 Mar 12 10:02 boinc_task_state.xml
[2026-03-12 10:03:41] -rw------- 1 boinc boinc      1020 Mar 12 10:03 memory_monitor_summary.json
[2026-03-12 10:03:41] -rw------- 1 boinc boinc    252381 Mar 12 10:03 log.48838581._005444.job.log.tgz.1
[2026-03-12 10:03:41] -rw------- 1 boinc boinc      6312 Mar 12 10:03 heartbeat.json
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc        27 Mar 12 10:03 wrapper_checkpoint.txt
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc      8192 Mar 12 10:03 boinc_mmap_file
[2026-03-12 10:03:41] -rw------- 1 boinc boinc       747 Mar 12 10:03 pilotlog.txt
[2026-03-12 10:03:41] -rw------- 1 boinc boinc    875744 Mar 12 10:03 log.48838581._005444.job.log.1
[2026-03-12 10:03:41] -rw------- 1 boinc boinc       357 Mar 12 10:03 output.list
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc       620 Mar 12 10:03 runtime_log
[2026-03-12 10:03:41] -rw------- 1 boinc boinc   1146880 Mar 12 10:03 result.tar.gz
[2026-03-12 10:03:41] -rw------- 1 boinc boinc       657 Mar 12 10:03 u4mKDmFMdH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmKIELDmjyJlKm.diag
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc      8896 Mar 12 10:03 runtime_log.err
[2026-03-12 10:03:41] -rw-r--r-- 1 boinc boinc     11937 Mar 12 10:03 stderr.txt
[2026-03-12 10:03:41] HITS file was successfully produced:
[2026-03-12 10:03:41] -rw------- 1 boinc boinc 230893174 Mar 12 10:02 shared/HITS.pool.root.1
[2026-03-12 10:03:41]  *** Contents of shared directory: ***
[2026-03-12 10:03:41] total 506396
[2026-03-12 10:03:41] -rw-r--r-- 2 boinc boinc 285883484 Mar 12 08:22 ATLAS.root_0
[2026-03-12 10:03:41] -rw-r--r-- 2 boinc boinc    597966 Mar 12 08:22 input.tar.gz
[2026-03-12 10:03:41] -rw-r--r-- 2 boinc boinc     15845 Mar 12 08:22 start_atlas.sh
[2026-03-12 10:03:41] -rw------- 1 boinc boinc 230893174 Mar 12 10:02 HITS.pool.root.1
[2026-03-12 10:03:41] -rw------- 1 boinc boinc   1146880 Mar 12 10:03 result.tar.gz
10:03:43 (3242208): run_atlas exited; CPU time 17474.847517
10:03:43 (3242208): called boinc_finish(0)

</stderr_txt>
]]>

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