Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:31:01 (2007713): wrapper (7.7.26015): starting
04:31:01 (2007713): wrapper: running run_atlas (--nthreads 2)
[2026-03-12 04:31:01] Arguments: --nthreads 2
[2026-03-12 04:31:01] Threads: 2
[2026-03-12 04:31:01] Checking for CVMFS
[2026-03-12 04:31:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 04:31:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 04:31:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 04:31:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 04:31:01] 2.9.2.0 838544 11790 62004 157181 2 49 27078520 36864001 0 130560 0 3392132 99.977 426848 12281 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 04:31:01] CVMFS is ok
[2026-03-12 04:31:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 04:31:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 04:31:01] Further information can be found at the LHC@home message board.
[2026-03-12 04:31:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 04:31:01] Checking for apptainer binary...
[2026-03-12 04:31:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 04:31:01] Running /usr/bin/apptainer --version
[2026-03-12 04:31:01] apptainer version 1.4.1-1.1
[2026-03-12 04:31:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 04:31:02] legendA165
[2026-03-12 04:31:02] apptainer works
[2026-03-12 04:31:02] Set ATHENA_PROC_NUMBER=2
[2026-03-12 04:31:02] Set ATHENA_CORE_NUMBER=2
[2026-03-12 04:31:02] Starting ATLAS job with PandaID=7049823129
[2026-03-12 04:31:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 07:03:03]  *** The last 200 lines of the pilot log: ***
[2026-03-12 07:03:03] 2026-03-12 06:02:31,833 | INFO     | zombie collector waiting for pid 2016156
[2026-03-12 07:03:03] 2026-03-12 06:02:31,833 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 07:03:03] 2026-03-12 06:02:31,833 | INFO     | collected zombie processes
[2026-03-12 07:03:03] 2026-03-12 06:02:31,833 | INFO     | will attempt to kill all subprocesses of pid=2016156
[2026-03-12 07:03:03] 2026-03-12 06:02:31,866 | INFO     | process IDs to be killed: [2016156] (in reverse order)
[2026-03-12 07:03:03] 2026-03-12 06:02:31,887 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 07:03:03] 2026-03-12 06:02:31,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 07:03:03] 2026-03-12 06:02:31,888 | INFO     | did not find any defunct processes belonging to 2016156
[2026-03-12 07:03:03] 2026-03-12 06:02:31,889 | INFO     | did not find any defunct processes belonging to 2016156
[2026-03-12 07:03:03] 2026-03-12 06:02:31,889 | INFO     | ready for new job
[2026-03-12 07:03:03] 2026-03-12 06:02:31,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 07:03:03] 2026-03-12 06:02:31,890 | INFO     | **************************************
[2026-03-12 07:03:03] 2026-03-12 06:02:31,890 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 07:03:03] 2026-03-12 06:02:31,890 | INFO     | **************************************
[2026-03-12 07:03:03] 2026-03-12 06:02:31,890 | INFO     | 
[2026-03-12 07:03:03] 2026-03-12 06:02:31,890 | INFO     | architecture information:
[2026-03-12 07:03:03] 2026-03-12 06:02:31,890 | INFO     | executing command: cat /etc/os-release
[2026-03-12 07:03:03] 2026-03-12 06:02:31,899 | INFO     | cat /etc/os-release:
[2026-03-12 07:03:03] NAME="CentOS Linux"
[2026-03-12 07:03:03] VERSION="7 (Core)"
[2026-03-12 07:03:03] ID="centos"
[2026-03-12 07:03:03] ID_LIKE="rhel fedora"
[2026-03-12 07:03:03] VERSION_ID="7"
[2026-03-12 07:03:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 07:03:03] ANSI_COLOR="0;31"
[2026-03-12 07:03:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 07:03:03] HOME_URL="https://www.centos.org/"
[2026-03-12 07:03:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 07:03:03] 
[2026-03-12 07:03:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 07:03:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 07:03:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 07:03:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 07:03:03] 
[2026-03-12 07:03:03] 2026-03-12 06:02:31,899 | INFO     | **************************************
[2026-03-12 07:03:03] 2026-03-12 06:02:32,403 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 07:03:03] 2026-03-12 06:02:32,415 | INFO     | sufficient remaining disk space (182846488576 B)
[2026-03-12 07:03:03] 2026-03-12 06:02:32,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 07:03:03] 2026-03-12 06:02:32,415 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 07:03:03] 2026-03-12 06:02:32,415 | INFO     | update_server=False
[2026-03-12 07:03:03] 2026-03-12 06:02:32,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 07:03:03] 2026-03-12 06:02:32,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 07:03:03] 2026-03-12 06:02:32,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 07:03:03] 2026-03-12 06:02:32,783 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 07:03:03] 2026-03-12 06:02:32,783 | INFO     | aborting loop
[2026-03-12 07:03:03] 2026-03-12 06:02:33,135 | INFO     | [monitor] cgroup control has ended
[2026-03-12 07:03:03] 2026-03-12 06:02:33,334 | INFO     | all data control threads have been joined
[2026-03-12 07:03:03] 2026-03-12 06:02:33,414 | INFO     | all payload control threads have been joined
[2026-03-12 07:03:03] 2026-03-12 06:02:33,421 | INFO     | [job] queue monitor thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:33,422 | INFO     | [job] retrieve thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:33,498 | INFO     | all job control threads have been joined
[2026-03-12 07:03:03] 2026-03-12 06:02:33,586 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:33,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 07:03:03] 2026-03-12 06:02:33,789 | INFO     | [job] job monitor thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:33,810 | INFO     | [payload] failed_post thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:34,327 | INFO     | [payload] validate_post thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:34,340 | INFO     | [data] control thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:34,420 | INFO     | [payload] control thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:34,443 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:34,505 | INFO     | [job] control thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:34,728 | INFO     | [data] copytool_in thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:34,744 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:34,758 | INFO     | [job] validate thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:35,765 | INFO     | [data] copytool_out thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:36,422 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:42,788 | INFO     | job.realtimelogging is not enabled
[2026-03-12 07:03:03] 2026-03-12 06:02:43,793 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 07:03:03] 2026-03-12 06:02:45,731 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140516783638336)>', '<ExcThread(monitor, started 140516112963328)>']
[2026-03-12 07:03:03] 2026-03-12 06:02:50,737 | INFO     | all workflow threads have been joined
[2026-03-12 07:03:03] 2026-03-12 06:02:50,737 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 07:03:03] 2026-03-12 06:02:50,737 | INFO     | traces error code: 0
[2026-03-12 07:03:03] 2026-03-12 06:02:50,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 07:03:03] 2026-03-12 06:03:03,033 | INFO     | PID=2011748 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 07:03:03] 2026-03-12 06:03:03,034 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 07:03:03] 2026-03-12 06:03:03,034 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 07:03:03] 2026-03-12 06:03:03,034 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 07:03:03] 2026-03-12 06:03:03,034 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 07:03:03] 2026-03-12 06:03:03,034 | INFO     | [monitor] control thread has ended
[2026-03-12 07:03:03] 2026-03-12 06:03:03,072 [wrapper] ==== pilot stdout END ====
[2026-03-12 07:03:03] 2026-03-12 06:03:03,074 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 07:03:03] 2026-03-12 06:03:03,077 [wrapper] pilotpid: 2011748
[2026-03-12 07:03:03] 2026-03-12 06:03:03,079 [wrapper] Pilot exit status: 0
[2026-03-12 07:03:03] 2026-03-12 06:03:03,085 [wrapper] pandaids: 7049823129
[2026-03-12 07:03:03] 2026-03-12 06:03:03,098 [wrapper] cleanup supervisor_pilot 2021560 2011749
[2026-03-12 07:03:03] 2026-03-12 06:03:03,101 [wrapper] Test setup, not cleaning
[2026-03-12 07:03:03] 2026-03-12 06:03:03,103 [wrapper] apfmon messages muted
[2026-03-12 07:03:03] 2026-03-12 06:03:03,106 [wrapper] ==== wrapper stdout END ====
[2026-03-12 07:03:03] 2026-03-12 06:03:03,108 [wrapper] ==== wrapper stderr END ====
[2026-03-12 07:03:03]  *** Error codes and diagnostics ***
[2026-03-12 07:03:03]     "exeErrorCode": 0,
[2026-03-12 07:03:03]     "exeErrorDiag": "",
[2026-03-12 07:03:03]     "pilotErrorCode": 0,
[2026-03-12 07:03:03]     "pilotErrorDiag": "",
[2026-03-12 07:03:03]  *** Listing of results directory ***
[2026-03-12 07:03:03] total 421004
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc    585013 Mar 11 13:15 pilot3.tar.gz
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc      5111 Mar 11 13:16 queuedata.json
[2026-03-12 07:03:03] -rwx------ 1 boinc boinc     36322 Mar 11 13:17 runpilot2-wrapper.sh
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc       100 Mar 12 04:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 07:03:03] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 04:31 run_atlas
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc       105 Mar 12 04:31 job.xml
[2026-03-12 07:03:03] -rw-r--r-- 2 boinc boinc 215746359 Mar 12 04:31 EVNT.48967008._000493.pool.root.1
[2026-03-12 07:03:03] -rw-r--r-- 2 boinc boinc    597525 Mar 12 04:31 input.tar.gz
[2026-03-12 07:03:03] -rw-r--r-- 2 boinc boinc     15845 Mar 12 04:31 start_atlas.sh
[2026-03-12 07:03:03] drwxrwx--x 2 boinc boinc      4096 Mar 12 04:31 shared
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc         0 Mar 12 04:31 boinc_setup_complete
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc      6209 Mar 12 04:31 init_data.xml
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc         0 Mar 12 04:31 boinc_lockfile
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc      2563 Mar 12 04:31 pandaJob.out
[2026-03-12 07:03:03] -rw------- 1 boinc boinc   1006227 Mar 12 04:31 agis_schedconf.cvmfs.json
[2026-03-12 07:03:03] -rw------- 1 boinc boinc   1511578 Mar 12 04:31 agis_ddmendpoints.agis.ALL.json
[2026-03-12 07:03:03] -rw------- 1 boinc boinc       421 Mar 12 04:31 workernode_map.json
[2026-03-12 07:03:03] drwx------ 5 boinc boinc      4096 Mar 12 04:31 pilot3
[2026-03-12 07:03:03] -rw------- 1 boinc boinc 208268402 Mar 12 07:02 HITS.48967011._012454.pool.root.1
[2026-03-12 07:03:03] -rw------- 1 boinc boinc        95 Mar 12 07:02 pilot_heartbeat.json
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc       529 Mar 12 07:02 boinc_task_state.xml
[2026-03-12 07:03:03] -rw------- 1 boinc boinc      1019 Mar 12 07:02 memory_monitor_summary.json
[2026-03-12 07:03:03] -rw------- 1 boinc boinc    293928 Mar 12 07:02 log.48967011._012454.job.log.tgz.1
[2026-03-12 07:03:03] -rw------- 1 boinc boinc      6313 Mar 12 07:02 heartbeat.json
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc      8192 Mar 12 07:02 boinc_mmap_file
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc        27 Mar 12 07:02 wrapper_checkpoint.txt
[2026-03-12 07:03:03] -rw------- 1 boinc boinc       747 Mar 12 07:03 pilotlog.txt
[2026-03-12 07:03:03] -rw------- 1 boinc boinc   1294331 Mar 12 07:03 log.48967011._012454.job.log.1
[2026-03-12 07:03:03] -rw------- 1 boinc boinc       357 Mar 12 07:03 output.list
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc       620 Mar 12 07:03 runtime_log
[2026-03-12 07:03:03] -rw------- 1 boinc boinc   1607680 Mar 12 07:03 result.tar.gz
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc      8916 Mar 12 07:03 runtime_log.err
[2026-03-12 07:03:03] -rw------- 1 boinc boinc       662 Mar 12 07:03 Ca5NDmwfXK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmejLDmtThLRn.diag
[2026-03-12 07:03:03] -rw-r--r-- 1 boinc boinc     10610 Mar 12 07:03 stderr.txt
[2026-03-12 07:03:03] HITS file was successfully produced:
[2026-03-12 07:03:03] -rw------- 1 boinc boinc 208268402 Mar 12 07:02 shared/HITS.pool.root.1
[2026-03-12 07:03:03]  *** Contents of shared directory: ***
[2026-03-12 07:03:03] total 416256
[2026-03-12 07:03:03] -rw-r--r-- 2 boinc boinc 215746359 Mar 12 04:31 ATLAS.root_0
[2026-03-12 07:03:03] -rw-r--r-- 2 boinc boinc    597525 Mar 12 04:31 input.tar.gz
[2026-03-12 07:03:03] -rw-r--r-- 2 boinc boinc     15845 Mar 12 04:31 start_atlas.sh
[2026-03-12 07:03:03] -rw------- 1 boinc boinc 208268402 Mar 12 07:02 HITS.pool.root.1
[2026-03-12 07:03:03] -rw------- 1 boinc boinc   1607680 Mar 12 07:03 result.tar.gz
07:03:04 (2007713): run_atlas exited; CPU time 17706.085513
07:03:04 (2007713): called boinc_finish(0)

</stderr_txt>
]]>

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