Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
22:14:06 (2201929): wrapper (7.7.26015): starting
22:14:06 (2201929): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 22:14:06] Arguments: --nthreads 4
[2026-03-11 22:14:06] Threads: 4
[2026-03-11 22:14:06] Checking for CVMFS
[2026-03-11 22:14:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 22:14:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 22:14:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 22:14:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 22:14:08] 2.13.3.0 3889861 20927 53416 157180 3 50 3407097 6144000 6454 130560 0 45514226 99.996 783708 1039 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2026-03-11 22:14:08] CVMFS is ok
[2026-03-11 22:14:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 22:14:08] Checking for apptainer binary...
[2026-03-11 22:14:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 22:14:08] Running /usr/bin/apptainer --version
[2026-03-11 22:14:08] apptainer version 1.4.5
[2026-03-11 22:14:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 22:14:08] Starfish-Cruncher
[2026-03-11 22:14:08] apptainer works
[2026-03-11 22:14:08] Set ATHENA_PROC_NUMBER=4
[2026-03-11 22:14:08] Set ATHENA_CORE_NUMBER=4
[2026-03-11 22:14:08] Starting ATLAS job with PandaID=7036277390
[2026-03-11 22:14:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 00:45:45]  *** The last 200 lines of the pilot log: ***
[2026-03-12 00:45:45] 2026-03-12 05:44:40,307 | INFO     | job 7036277390 has finished - writing final server update
[2026-03-12 00:45:45] 2026-03-12 05:44:40,308 | INFO     | total number of processed events: 400 (read)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,312 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-7036277390/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,312 | INFO     | extracted standard info from prmon json
[2026-03-12 00:45:45] 2026-03-12 05:44:40,313 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 00:45:45] 2026-03-12 05:44:40,313 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 00:45:45] 2026-03-12 05:44:40,313 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 00:45:45] 2026-03-12 05:44:40,313 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 00:45:45] 2026-03-12 05:44:40,315 | INFO     | fitting pss+swap vs Time
[2026-03-12 00:45:45] 2026-03-12 05:44:40,315 | INFO     | sum of square deviations: 1005179777.0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,316 | INFO     | sum of deviations: 4331579865.999998
[2026-03-12 00:45:45] 2026-03-12 05:44:40,316 | INFO     | mean x: 1773289768.5
[2026-03-12 00:45:45] 2026-03-12 05:44:40,316 | INFO     | mean y: 2306458.7702702703
[2026-03-12 00:45:45] 2026-03-12 05:44:40,316 | INFO     | intersect: -7639258198.193971
[2026-03-12 00:45:45] 2026-03-12 05:44:40,316 | INFO     | chi2: 1.9907267243909668
[2026-03-12 00:45:45] 2026-03-12 05:44:40,316 | INFO     | sum of square deviations: 906703512.0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,317 | INFO     | sum of deviations: 13125101173.000004
[2026-03-12 00:45:45] 2026-03-12 05:44:40,317 | INFO     | mean x: 1773289616.0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,317 | INFO     | mean y: 2319689.72027972
[2026-03-12 00:45:45] 2026-03-12 05:44:40,317 | INFO     | intersect: -25667158051.345673
[2026-03-12 00:45:45] 2026-03-12 05:44:40,317 | INFO     | chi2: 1.2164042137270659
[2026-03-12 00:45:45] 2026-03-12 05:44:40,318 | INFO     | current chi2=1.2164042137270659 (change=38.896474396845875 %)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,318 | INFO     | sum of square deviations: 814878534.5
[2026-03-12 00:45:45] 2026-03-12 05:44:40,318 | INFO     | sum of deviations: 12624097437.0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,318 | INFO     | mean x: 1773289463.5
[2026-03-12 00:45:45] 2026-03-12 05:44:40,318 | INFO     | mean y: 2318857.347826087
[2026-03-12 00:45:45] 2026-03-12 05:44:40,319 | INFO     | intersect: -27469479727.904335
[2026-03-12 00:45:45] 2026-03-12 05:44:40,319 | INFO     | chi2: 1.2177363361519864
[2026-03-12 00:45:45] 2026-03-12 05:44:40,319 | INFO     | current chi2=1.2177363361519864 (change=-0.10951313797564936 %)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,319 | INFO     | right removable region: 137
[2026-03-12 00:45:45] 2026-03-12 05:44:40,319 | INFO     | sum of square deviations: 906703512.0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,320 | INFO     | sum of deviations: -11394810614.000002
[2026-03-12 00:45:45] 2026-03-12 05:44:40,320 | INFO     | mean x: 1773289921.0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,320 | INFO     | mean y: 2330308.874125874
[2026-03-12 00:45:45] 2026-03-12 05:44:40,320 | INFO     | intersect: 22287788064.45192
[2026-03-12 00:45:45] 2026-03-12 05:44:40,320 | INFO     | chi2: 0.8013091079421261
[2026-03-12 00:45:45] 2026-03-12 05:44:40,320 | INFO     | current chi2=0.8013091079421261 (change=59.747910241810075 %)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,320 | INFO     | sum of square deviations: 814878534.5
[2026-03-12 00:45:45] 2026-03-12 05:44:40,321 | INFO     | sum of deviations: -10285556846.0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,321 | INFO     | mean x: 1773290073.5
[2026-03-12 00:45:45] 2026-03-12 05:44:40,321 | INFO     | mean y: 2328470.84057971
[2026-03-12 00:45:45] 2026-03-12 05:44:40,321 | INFO     | intersect: 22385143925.19928
[2026-03-12 00:45:45] 2026-03-12 05:44:40,321 | INFO     | chi2: 0.8011714580611268
[2026-03-12 00:45:45] 2026-03-12 05:44:40,321 | INFO     | current chi2=0.8011714580611268 (change=0.01717812509991246 %)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,321 | INFO     | left removable region: 20
[2026-03-12 00:45:45] 2026-03-12 05:44:40,322 | INFO     | sum of square deviations: 496597218.0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,322 | INFO     | sum of deviations: -1000747150.9999993
[2026-03-12 00:45:45] 2026-03-12 05:44:40,322 | INFO     | mean x: 1773290043.0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,322 | INFO     | mean y: 2342295.5042735045
[2026-03-12 00:45:45] 2026-03-12 05:44:40,322 | INFO     | intersect: 3575892235.1837907
[2026-03-12 00:45:45] 2026-03-12 05:44:40,322 | INFO     | chi2: 0.0012409962473759824
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | current memory leak: -2.02 B/s (using 117 data points, chi2=0.00)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | could have reported an average CPU frequency of 3581 MHz (8 samples)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | ..............................
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | . Timing measurements:
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | . get job = 0 s
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | . initial setup = 6 s
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | . payload setup = 4 s
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | . stage-in = 0 s
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | . payload execution = 8990 s
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | . stage-out = 0 s
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | . log creation = 0 s
[2026-03-12 00:45:45] 2026-03-12 05:44:40,323 | INFO     | ..............................
[2026-03-12 00:45:45] 2026-03-12 05:44:40,449 | INFO     | time since job start (9015s) is within the limit (349056.0s)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,843 | INFO     | 
[2026-03-12 00:45:45] 2026-03-12 05:44:40,843 | INFO     | job summary report
[2026-03-12 00:45:45] 2026-03-12 05:44:40,843 | INFO     | --------------------------------------------------
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | PanDA job id: 7036277390
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | task id: 48838581
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | errors: (none)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | pilot state: finished 
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | transexitcode: 0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | exeerrorcode: 0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | exeerrordiag: 
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | exitcode: 0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | exitmsg: OK
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | cpuconsumptiontime: 34663 s
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | nevents: 400
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | neventsw: 0
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | pid: 2210955
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | pgrp: 2210955
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | corecount: 4
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | event service: False
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | sizes: {0: 2280000, 1: 2280290, 11: 2280290, 8998: 2308562, 8999: 2317629, 9001: 2317629, 9004: 2317951}
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | --------------------------------------------------
[2026-03-12 00:45:45] 2026-03-12 05:44:40,844 | INFO     | 
[2026-03-12 00:45:45] 2026-03-12 05:44:40,845 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2026-03-12 00:45:45] 2026-03-12 05:44:40,864 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,865 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,866 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,866 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,866 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,866 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,866 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,866 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,866 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 00:45:45] 2026-03-12 05:44:40,866 | INFO     | job 7036277390 has completed (purged errors)
[2026-03-12 00:45:45] 2026-03-12 05:44:40,866 | INFO     | overall cleanup function is called
[2026-03-12 00:45:45] 2026-03-12 05:44:41,874 | INFO     | --- collectZombieJob: --- 10, [2210955]
[2026-03-12 00:45:45] 2026-03-12 05:44:41,874 | INFO     | zombie collector waiting for pid 2210955
[2026-03-12 00:45:45] 2026-03-12 05:44:41,874 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 00:45:45] 2026-03-12 05:44:41,874 | INFO     | collected zombie processes
[2026-03-12 00:45:45] 2026-03-12 05:44:41,874 | INFO     | will attempt to kill all subprocesses of pid=2210955
[2026-03-12 00:45:45] 2026-03-12 05:44:42,041 | INFO     | process IDs to be killed: [2210955] (in reverse order)
[2026-03-12 00:45:45] 2026-03-12 05:44:42,101 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 00:45:45] 2026-03-12 05:44:42,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 00:45:45] 2026-03-12 05:44:42,106 | INFO     | did not find any defunct processes belonging to 2210955
[2026-03-12 00:45:45] 2026-03-12 05:44:42,110 | INFO     | did not find any defunct processes belonging to 2210955
[2026-03-12 00:45:45] 2026-03-12 05:44:42,111 | INFO     | ready for new job
[2026-03-12 00:45:45] 2026-03-12 05:44:42,111 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 00:45:45] 2026-03-12 05:44:42,112 | INFO     | **************************************
[2026-03-12 00:45:45] 2026-03-12 05:44:42,112 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 00:45:45] 2026-03-12 05:44:42,112 | INFO     | **************************************
[2026-03-12 00:45:45] 2026-03-12 05:44:42,112 | INFO     | 
[2026-03-12 00:45:45] 2026-03-12 05:44:42,114 | INFO     | architecture information:
[2026-03-12 00:45:45] 2026-03-12 05:44:42,114 | INFO     | executing command: cat /etc/os-release
[2026-03-12 00:45:45] 2026-03-12 05:44:42,127 | INFO     | cat /etc/os-release:
[2026-03-12 00:45:45] NAME="CentOS Linux"
[2026-03-12 00:45:45] VERSION="7 (Core)"
[2026-03-12 00:45:45] ID="centos"
[2026-03-12 00:45:45] ID_LIKE="rhel fedora"
[2026-03-12 00:45:45] VERSION_ID="7"
[2026-03-12 00:45:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 00:45:45] ANSI_COLOR="0;31"
[2026-03-12 00:45:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 00:45:45] HOME_URL="https://www.centos.org/"
[2026-03-12 00:45:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 00:45:45] 
[2026-03-12 00:45:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 00:45:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 00:45:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 00:45:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 00:45:45] 
[2026-03-12 00:45:45] 2026-03-12 05:44:42,127 | INFO     | **************************************
[2026-03-12 00:45:45] 2026-03-12 05:44:42,630 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2026-03-12 00:45:45] 2026-03-12 05:44:42,643 | INFO     | sufficient remaining disk space (1809263362048 B)
[2026-03-12 00:45:45] 2026-03-12 05:44:42,643 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 00:45:45] 2026-03-12 05:44:42,643 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 00:45:45] 2026-03-12 05:44:42,643 | INFO     | update_server=False
[2026-03-12 00:45:45] 2026-03-12 05:44:42,643 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 00:45:45] 2026-03-12 05:44:42,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 00:45:45] 2026-03-12 05:44:42,644 | INFO     | aborting loop
[2026-03-12 00:45:45] 2026-03-12 05:44:43,107 | INFO     | all job control threads have been joined
[2026-03-12 00:45:45] 2026-03-12 05:44:43,254 | INFO     | all payload control threads have been joined
[2026-03-12 00:45:45] 2026-03-12 05:44:43,477 | INFO     | all data control threads have been joined
[2026-03-12 00:45:45] 2026-03-12 05:44:43,597 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 00:45:45] 2026-03-12 05:44:43,646 | INFO     | [job] job monitor thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:43,649 | INFO     | [job] retrieve thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:43,683 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:43,818 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 00:45:45] 2026-03-12 05:44:43,900 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:43,916 | INFO     | [payload] validate_post thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:44,077 | INFO     | [data] copytool_in thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:44,113 | INFO     | [job] control thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:44,258 | INFO     | [payload] control thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:44,428 | INFO     | [payload] failed_post thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:44,482 | INFO     | [data] control thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:44,850 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:44,882 | INFO     | [job] validate thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:45,401 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 00:45:45] 2026-03-12 05:44:45,823 | INFO     | [data] copytool_out thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:46,407 | INFO     | [job] queue monitor thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:47,603 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:44:53,304 | INFO     | job.realtimelogging is not enabled
[2026-03-12 00:45:45] 2026-03-12 05:44:54,309 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 00:45:45] 2026-03-12 05:45:13,720 | INFO     | PID=2206215 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 00:45:45] 2026-03-12 05:45:13,720 | INFO     | .. there are 8 such processes running
[2026-03-12 00:45:45] 2026-03-12 05:45:13,720 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 00:45:45] 2026-03-12 05:45:13,720 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 00:45:45] 2026-03-12 05:45:13,720 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 00:45:45] 2026-03-12 05:45:39,768 | INFO     | [monitor] cgroup control has ended
[2026-03-12 00:45:45] 2026-03-12 05:45:40,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140190630500160)>', '<ExcThread(monitor, started 140189980669696)>']
[2026-03-12 00:45:45] 2026-03-12 05:45:40,849 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 00:45:45] 2026-03-12 05:45:40,849 | INFO     | [monitor] control thread has ended
[2026-03-12 00:45:45] 2026-03-12 05:45:45,603 | INFO     | all workflow threads have been joined
[2026-03-12 00:45:45] 2026-03-12 05:45:45,603 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 00:45:45] 2026-03-12 05:45:45,604 | INFO     | traces error code: 0
[2026-03-12 00:45:45] 2026-03-12 05:45:45,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 00:45:45] 2026-03-12 05:45:45,677 [wrapper] ==== pilot stdout END ====
[2026-03-12 00:45:45] 2026-03-12 05:45:45,679 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 00:45:45] 2026-03-12 05:45:45,682 [wrapper] pilotpid: 2206215
[2026-03-12 00:45:45] 2026-03-12 05:45:45,684 [wrapper] Pilot exit status: 0
[2026-03-12 00:45:45] 2026-03-12 05:45:45,692 [wrapper] pandaids: 7036277390
[2026-03-12 00:45:45] 2026-03-12 05:45:45,734 [wrapper] cleanup supervisor_pilot 2386270 2206216
[2026-03-12 00:45:45] 2026-03-12 05:45:45,736 [wrapper] Test setup, not cleaning
[2026-03-12 00:45:45] 2026-03-12 05:45:45,739 [wrapper] apfmon messages muted
[2026-03-12 00:45:45] 2026-03-12 05:45:45,741 [wrapper] ==== wrapper stdout END ====
[2026-03-12 00:45:45] 2026-03-12 05:45:45,743 [wrapper] ==== wrapper stderr END ====
[2026-03-12 00:45:45]  *** Error codes and diagnostics ***
[2026-03-12 00:45:45]     "exeErrorCode": 0,
[2026-03-12 00:45:45]     "exeErrorDiag": "",
[2026-03-12 00:45:45]     "pilotErrorCode": 0,
[2026-03-12 00:45:45]     "pilotErrorDiag": "",
[2026-03-12 00:45:45]  *** Listing of results directory ***
[2026-03-12 00:45:45] total 511756
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc      5111 Mar  3 05:44 queuedata.json
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc    584627 Mar  3 05:44 pilot3.tar.gz
[2026-03-12 00:45:45] -rwx------ 1 boinc boinc     36322 Mar  3 05:44 runpilot2-wrapper.sh
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc       100 Mar 11 22:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 00:45:45] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 22:14 run_atlas
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc       105 Mar 11 22:14 job.xml
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc      9665 Mar 11 22:14 init_data.xml
[2026-03-12 00:45:45] -rw-r--r-- 2 boinc boinc 289185446 Mar 11 22:14 EVNT.48220205._000226.pool.root.1
[2026-03-12 00:45:45] -rw-r--r-- 2 boinc boinc     15845 Mar 11 22:14 start_atlas.sh
[2026-03-12 00:45:45] drwxrwx--x 2 boinc boinc      4096 Mar 11 22:14 shared
[2026-03-12 00:45:45] -rw-r--r-- 2 boinc boinc    597959 Mar 11 22:14 input.tar.gz
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc         0 Mar 11 22:14 boinc_lockfile
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc      2585 Mar 11 22:14 pandaJob.out
[2026-03-12 00:45:45] -rw------- 1 boinc boinc   1006235 Mar 11 22:14 agis_schedconf.cvmfs.json
[2026-03-12 00:45:45] -rw------- 1 boinc boinc   1511578 Mar 11 22:14 agis_ddmendpoints.agis.ALL.json
[2026-03-12 00:45:45] -rw------- 1 boinc boinc       425 Mar 11 22:14 workernode_map.json
[2026-03-12 00:45:45] drwx------ 5 boinc boinc      4096 Mar 11 22:14 pilot3
[2026-03-12 00:45:45] -rw------- 1 boinc boinc 227684960 Mar 12 00:44 HITS.48838581._005419.pool.root.1
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc       529 Mar 12 00:44 boinc_task_state.xml
[2026-03-12 00:45:45] -rw------- 1 boinc boinc      1025 Mar 12 00:44 memory_monitor_summary.json
[2026-03-12 00:45:45] -rw------- 1 boinc boinc    312413 Mar 12 00:44 log.48838581._005419.job.log.tgz.1
[2026-03-12 00:45:45] -rw------- 1 boinc boinc        95 Mar 12 00:44 pilot_heartbeat.json
[2026-03-12 00:45:45] -rw------- 1 boinc boinc      6301 Mar 12 00:44 heartbeat.json
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc      8192 Mar 12 00:45 boinc_mmap_file
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc        27 Mar 12 00:45 wrapper_checkpoint.txt
[2026-03-12 00:45:45] -rw------- 1 boinc boinc      4900 Mar 12 00:45 pilotlog.txt
[2026-03-12 00:45:45] -rw------- 1 boinc boinc   1298639 Mar 12 00:45 log.48838581._005419.job.log.1
[2026-03-12 00:45:45] -rw------- 1 boinc boinc       357 Mar 12 00:45 output.list
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc       620 Mar 12 00:45 runtime_log
[2026-03-12 00:45:45] -rw------- 1 boinc boinc   1628160 Mar 12 00:45 result.tar.gz
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc      8932 Mar 12 00:45 runtime_log.err
[2026-03-12 00:45:45] -rw------- 1 boinc boinc       653 Mar 12 00:45 9FPLDm8LdH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmVSGLDm1r7ONm.diag
[2026-03-12 00:45:45] -rw-r--r-- 1 boinc boinc     20765 Mar 12 00:45 stderr.txt
[2026-03-12 00:45:45] HITS file was successfully produced:
[2026-03-12 00:45:45] -rw------- 1 boinc boinc 227684960 Mar 12 00:44 shared/HITS.pool.root.1
[2026-03-12 00:45:45]  *** Contents of shared directory: ***
[2026-03-12 00:45:45] total 506960
[2026-03-12 00:45:45] -rw-r--r-- 2 boinc boinc 289185446 Mar 11 22:14 ATLAS.root_0
[2026-03-12 00:45:45] -rw-r--r-- 2 boinc boinc     15845 Mar 11 22:14 start_atlas.sh
[2026-03-12 00:45:45] -rw-r--r-- 2 boinc boinc    597959 Mar 11 22:14 input.tar.gz
[2026-03-12 00:45:45] -rw------- 1 boinc boinc 227684960 Mar 12 00:44 HITS.pool.root.1
[2026-03-12 00:45:45] -rw------- 1 boinc boinc   1628160 Mar 12 00:45 result.tar.gz
00:45:47 (2201929): run_atlas exited; CPU time 34800.798945
00:45:47 (2201929): called boinc_finish(0)

</stderr_txt>
]]>

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