Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:28:28 (2458228): wrapper (7.7.26015): starting
12:28:28 (2458228): wrapper: running run_atlas (--nthreads 4)
[2026-03-13 12:28:28] Arguments: --nthreads 4
[2026-03-13 12:28:28] Threads: 4
[2026-03-13 12:28:28] Checking for CVMFS
[2026-03-13 12:28:28] No cvmfs_config command found, will try listing directly
[2026-03-13 12:28:28] CVMFS is ok
[2026-03-13 12:28:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 12:28:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 12:28:28] Further information can be found at the LHC@home message board.
[2026-03-13 12:28:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 12:28:28] Checking for apptainer binary...
[2026-03-13 12:28:28] which: no apptainer in ((null))
[2026-03-13 12:28:28] apptainer is not installed, using version from CVMFS
[2026-03-13 12:28:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 12:28:28] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot184/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-13 12:28:28] apptainer works
[2026-03-13 12:28:28] Set ATHENA_PROC_NUMBER=4
[2026-03-13 12:28:28] Set ATHENA_CORE_NUMBER=4
[2026-03-13 12:28:28] Starting ATLAS job with PandaID=7038749718
[2026-03-13 12:28:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot184/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 13:35:29]  *** The last 200 lines of the pilot log: ***
[2026-03-13 13:35:29] ]
[2026-03-13 13:35:29] 2026-03-13 12:34:32,606 | INFO     | transferring file log.48700890._003045.job.log.tgz.1 from /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7038749718/log.48700890._003045.job.log.tgz.1 to /var/lib/
[2026-03-13 13:35:29] 2026-03-13 12:34:32,606 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7038749718/log.48700890._003045.job.log.tgz.1 /var/lib/boinc/var/slot184/slots/0/
[2026-03-13 13:35:29] 2026-03-13 12:34:32,624 | INFO     | adding to output.list: log.48700890._003045.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/af/log.48700890._003045.job.log.tg
[2026-03-13 13:35:29] 2026-03-13 12:34:32,624 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-13 13:35:29] 2026-03-13 12:34:32,624 | INFO     | summary of transferred files:
[2026-03-13 13:35:29] 2026-03-13 12:34:32,624 | INFO     |  -- lfn=log.48700890._003045.job.log.tgz.1, status_code=0, status=transferred
[2026-03-13 13:35:29] 2026-03-13 12:34:32,625 | INFO     | stage-out finished correctly
[2026-03-13 13:35:29] 2026-03-13 12:34:33,937 | INFO     | time since job start (3952s) is within the limit (349056.0s)
[2026-03-13 13:35:29] 2026-03-13 12:34:35,595 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-13 13:35:29] 2026-03-13 12:34:35,662 | INFO     | job 7038749718 has state=finished
[2026-03-13 13:35:29] 2026-03-13 12:34:35,662 | INFO     | preparing for final server update for job 7038749718 in state='finished'
[2026-03-13 13:35:29] 2026-03-13 12:34:35,663 | INFO     | reading metadata from: /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7038749718/jobReport.json
[2026-03-13 13:35:29] 2026-03-13 12:34:35,664 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot184/slots/0/workernode_map.json
[2026-03-13 13:35:29] 2026-03-13 12:34:35,664 | INFO     | this job has now completed (state=finished)
[2026-03-13 13:35:29] 2026-03-13 12:34:35,664 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-13 13:35:29] 2026-03-13 12:34:35,664 | INFO     | log transfer has been attempted: DONE
[2026-03-13 13:35:29] 2026-03-13 12:34:35,664 | INFO     | job 7038749718 has finished - writing final server update
[2026-03-13 13:35:29] 2026-03-13 12:34:35,666 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1893217/.job.ad'
[2026-03-13 13:35:29] 2026-03-13 12:34:35,666 | INFO     | total number of processed events: 400 (read)
[2026-03-13 13:35:29] 2026-03-13 12:34:35,688 | INFO     | using path: /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7038749718/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 13:35:29] 2026-03-13 12:34:35,695 | INFO     | extracted standard info from prmon json
[2026-03-13 13:35:29] 2026-03-13 12:34:35,695 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 13:35:29] 2026-03-13 12:34:35,695 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 13:35:29] 2026-03-13 12:34:35,695 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 13:35:29] 2026-03-13 12:34:35,695 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 13:35:29] 2026-03-13 12:34:35,696 | INFO     | fitting pss+swap vs Time
[2026-03-13 13:35:29] 2026-03-13 12:34:35,696 | INFO     | sum of square deviations: 60482994.5
[2026-03-13 13:35:29] 2026-03-13 12:34:35,696 | INFO     | sum of deviations: -725120419.9999999
[2026-03-13 13:35:29] 2026-03-13 12:34:35,696 | INFO     | mean x: 1773403386.5
[2026-03-13 13:35:29] 2026-03-13 12:34:35,696 | INFO     | mean y: 2330961.4137931033
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | intersect: 21263365059.986774
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | chi2: 0.0007140419676995235
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | current memory leak: -11.99 B/s (using 58 data points, chi2=0.00)
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | could have reported an average CPU frequency of 3581 MHz (6 samples)
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | ..............................
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | . Timing measurements:
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | . get job = 0 s
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | . initial setup = 5 s
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | . payload setup = 5 s
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | . stage-in = 0 s
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | . payload execution = 3929 s
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | . stage-out = 0 s
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | . log creation = 0 s
[2026-03-13 13:35:29] 2026-03-13 12:34:35,697 | INFO     | ..............................
[2026-03-13 13:35:29] 2026-03-13 12:34:35,943 | INFO     | time since job start (3954s) is within the limit (349056.0s)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,044 | WARNING  | process 2490839 can no longer be monitored (due to stat problems) - aborting
[2026-03-13 13:35:29] 2026-03-13 12:34:36,045 | INFO     | using path: /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7038749718/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,045 | INFO     | using path: /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7038749718/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,045 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-13 13:35:29] 2026-03-13 12:34:36,045 | WARNING  | maxPSS not found in memory monitor output
[2026-03-13 13:35:29] 2026-03-13 12:34:36,046 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2753791 B
[2026-03-13 13:35:29] 2026-03-13 12:34:36,046 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15369 B
[2026-03-13 13:35:29] 2026-03-13 12:34:36,046 | INFO     | executing command: df -mP /var/lib/boinc/var/slot184/slots/0
[2026-03-13 13:35:29] 2026-03-13 12:34:36,056 | INFO     | sufficient remaining disk space (21243101184 B)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,056 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,056 | INFO     | size of work directory /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7038749718: 3047636 B (within 5033164800 B limit)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,057 | INFO     | pfn file=/var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7038749718/HITS.48700890._003045.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,057 | INFO     | total size of present files: 0 B (workdir size: 3047636 B)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,057 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7038749718/HITS.48700890._003045.pool.root.1 since it does not exist
[2026-03-13 13:35:29] 2026-03-13 12:34:36,185 | INFO     | 
[2026-03-13 13:35:29] 2026-03-13 12:34:36,185 | INFO     | job summary report
[2026-03-13 13:35:29] 2026-03-13 12:34:36,185 | INFO     | --------------------------------------------------
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | PanDA job id: 7038749718
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | task id: 48700890
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | errors: (none)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | pilot state: finished 
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | transexitcode: 0
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | exeerrorcode: 0
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | exeerrordiag: 
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | exitcode: 0
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | exitmsg: OK
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | cpuconsumptiontime: 14830 s
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | nevents: 400
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | neventsw: 0
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | pid: 2490839
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | pgrp: 2490839
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | corecount: 4
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | event service: False
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | sizes: {0: 2280129, 10: 2280129, 3938: 2305990, 3939: 2315012, 3942: 2315262}
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | --------------------------------------------------
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | 
[2026-03-13 13:35:29] 2026-03-13 12:34:36,186 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot184/slots/0
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 13:35:29] 2026-03-13 12:34:36,203 | INFO     | job 7038749718 has completed (purged errors)
[2026-03-13 13:35:29] 2026-03-13 12:34:36,204 | INFO     | overall cleanup function is called
[2026-03-13 13:35:29] 2026-03-13 12:34:36,536 | INFO     | number of running child processes to parent process 2490839: 1
[2026-03-13 13:35:29] 2026-03-13 12:34:36,536 | INFO     | maximum number of monitored processes: 6
[2026-03-13 13:35:29] 2026-03-13 12:34:36,536 | INFO     | aborting job monitoring since job object (job id=7038749718) has expired
[2026-03-13 13:35:29] 2026-03-13 12:34:37,211 | INFO     | --- collectZombieJob: --- 10, [2490839]
[2026-03-13 13:35:29] 2026-03-13 12:34:37,211 | INFO     | zombie collector waiting for pid 2490839
[2026-03-13 13:35:29] 2026-03-13 12:34:37,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 13:35:29] 2026-03-13 12:34:37,212 | INFO     | collected zombie processes
[2026-03-13 13:35:29] 2026-03-13 12:34:37,212 | INFO     | will attempt to kill all subprocesses of pid=2490839
[2026-03-13 13:35:29] 2026-03-13 12:34:38,317 | INFO     | PID=2469293 has CPU usage=16.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-13 13:35:29] 2026-03-13 12:34:38,317 | INFO     | .. there are 45 such processes running
[2026-03-13 13:35:29] 2026-03-13 12:34:38,478 | INFO     | process IDs to be killed: [2490839] (in reverse order)
[2026-03-13 13:35:29] 2026-03-13 12:34:38,709 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 13:35:29] 2026-03-13 12:34:38,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 13:35:29] 2026-03-13 12:34:38,742 | INFO     | did not find any defunct processes belonging to 2490839
[2026-03-13 13:35:29] 2026-03-13 12:34:38,775 | INFO     | did not find any defunct processes belonging to 2490839
[2026-03-13 13:35:29] 2026-03-13 12:34:38,775 | INFO     | ready for new job
[2026-03-13 13:35:29] 2026-03-13 12:34:38,776 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 13:35:29] 2026-03-13 12:34:38,777 | INFO     | **************************************
[2026-03-13 13:35:29] 2026-03-13 12:34:38,778 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 13:35:29] 2026-03-13 12:34:38,778 | INFO     | **************************************
[2026-03-13 13:35:29] 2026-03-13 12:34:38,778 | INFO     | 
[2026-03-13 13:35:29] 2026-03-13 12:34:38,785 | INFO     | architecture information:
[2026-03-13 13:35:29] 2026-03-13 12:34:38,785 | INFO     | executing command: cat /etc/os-release
[2026-03-13 13:35:29] 2026-03-13 12:34:38,803 | INFO     | cat /etc/os-release:
[2026-03-13 13:35:29] NAME="CentOS Linux"
[2026-03-13 13:35:29] VERSION="7 (Core)"
[2026-03-13 13:35:29] ID="centos"
[2026-03-13 13:35:29] ID_LIKE="rhel fedora"
[2026-03-13 13:35:29] VERSION_ID="7"
[2026-03-13 13:35:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 13:35:29] ANSI_COLOR="0;31"
[2026-03-13 13:35:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 13:35:29] HOME_URL="https://www.centos.org/"
[2026-03-13 13:35:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 13:35:29] 
[2026-03-13 13:35:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 13:35:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 13:35:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 13:35:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 13:35:29] 
[2026-03-13 13:35:29] 2026-03-13 12:34:38,803 | INFO     | **************************************
[2026-03-13 13:35:29] 2026-03-13 12:34:39,306 | INFO     | executing command: df -mP /var/lib/boinc/var/slot184/slots/0
[2026-03-13 13:35:29] 2026-03-13 12:34:39,325 | INFO     | sufficient remaining disk space (21238906880 B)
[2026-03-13 13:35:29] 2026-03-13 12:34:39,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 13:35:29] 2026-03-13 12:34:39,325 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 13:35:29] 2026-03-13 12:34:39,325 | INFO     | update_server=False
[2026-03-13 13:35:29] 2026-03-13 12:34:39,325 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 13:35:29] 2026-03-13 12:34:40,044 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 13:35:29] 2026-03-13 12:34:40,044 | INFO     | aborting loop
[2026-03-13 13:35:29] 2026-03-13 12:34:40,330 | INFO     | [job] retrieve thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:40,361 | INFO     | [job] validate thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:40,405 | INFO     | all data control threads have been joined
[2026-03-13 13:35:29] 2026-03-13 12:34:40,520 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:40,576 | INFO     | all payload control threads have been joined
[2026-03-13 13:35:29] 2026-03-13 12:34:40,611 | INFO     | [payload] validate_post thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:40,636 | INFO     | all job control threads have been joined
[2026-03-13 13:35:29] 2026-03-13 12:34:40,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 13:35:29] 2026-03-13 12:34:40,698 | INFO     | [payload] failed_post thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:40,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 13:35:29] 2026-03-13 12:34:40,871 | INFO     | [data] copytool_in thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:41,051 | INFO     | [job] job monitor thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:41,410 | INFO     | [data] control thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:41,568 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:41,581 | INFO     | [payload] control thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:41,608 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:41,641 | INFO     | [job] control thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:41,651 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 13:35:29] 2026-03-13 12:34:41,747 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:41,762 | INFO     | [job] queue monitor thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:42,691 | INFO     | [data] copytool_out thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:45,657 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 13:35:29] 2026-03-13 12:34:47,855 | INFO     | [monitor] cgroup control has ended
[2026-03-13 13:35:29] 2026-03-13 12:34:49,145 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23255242999616)>', '<ExcThread(monitor, started 23255007381248)>']
[2026-03-13 13:35:29] 2026-03-13 12:34:54,170 | INFO     | all workflow threads have been joined
[2026-03-13 13:35:29] 2026-03-13 12:34:54,170 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 13:35:29] 2026-03-13 12:34:54,170 | INFO     | traces error code: 0
[2026-03-13 13:35:29] 2026-03-13 12:34:54,170 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 13:35:29] 2026-03-13 12:35:10,925 | INFO     | PID=2469293 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 13:35:29] 2026-03-13 12:35:10,925 | INFO     | .. there are 45 such processes running
[2026-03-13 13:35:29] 2026-03-13 12:35:10,926 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 13:35:29] 2026-03-13 12:35:10,926 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 13:35:29] 2026-03-13 12:35:10,926 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 13:35:29] 2026-03-13 12:35:10,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 13:35:29] 2026-03-13 12:35:10,926 | INFO     | [monitor] control thread has ended
[2026-03-13 13:35:29] 2026-03-13 12:35:11,071 [wrapper] ==== pilot stdout END ====
[2026-03-13 13:35:29] 2026-03-13 12:35:11,073 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 13:35:29] 2026-03-13 12:35:11,074 [wrapper] pilotpid: 2469293
[2026-03-13 13:35:29] 2026-03-13 12:35:11,077 [wrapper] Pilot exit status: 0
[2026-03-13 13:35:29] 2026-03-13 12:35:11,084 [wrapper] pandaids: 7038749718
[2026-03-13 13:35:29] 2026-03-13 12:35:11,219 [wrapper] cleanup supervisor_pilot 3027835 2469294
[2026-03-13 13:35:29] 2026-03-13 12:35:11,222 [wrapper] Test setup, not cleaning
[2026-03-13 13:35:29] 2026-03-13 12:35:11,226 [wrapper] apfmon messages muted
[2026-03-13 13:35:29] 2026-03-13 12:35:11,228 [wrapper] ==== wrapper stdout END ====
[2026-03-13 13:35:29] 2026-03-13 12:35:11,230 [wrapper] ==== wrapper stderr END ====
[2026-03-13 13:35:29]  *** Error codes and diagnostics ***
[2026-03-13 13:35:29]     "exeErrorCode": 0,
[2026-03-13 13:35:29]     "exeErrorDiag": "",
[2026-03-13 13:35:29]     "pilotErrorCode": 0,
[2026-03-13 13:35:29]     "pilotErrorDiag": "",
[2026-03-13 13:35:29]  *** Listing of results directory ***
[2026-03-13 13:35:29] total 332676
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc      5111 Mar  4 11:35 queuedata.json
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc    584627 Mar  4 11:35 pilot3.tar.gz
[2026-03-13 13:35:29] -rwx------. 1 boinc boinc     36322 Mar  4 11:35 runpilot2-wrapper.sh
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc       100 Mar 13 12:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 13:35:29] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 12:28 run_atlas
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc       105 Mar 13 12:28 job.xml
[2026-03-13 13:35:29] -rw-r--r--. 2 boinc boinc 187841294 Mar 13 12:28 EVNT.48700888._000138.pool.root.1
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc      6709 Mar 13 12:28 init_data.xml
[2026-03-13 13:35:29] drwxrwx--x. 2 boinc boinc      4096 Mar 13 12:28 shared
[2026-03-13 13:35:29] -rw-r--r--. 2 boinc boinc    597927 Mar 13 12:28 input.tar.gz
[2026-03-13 13:35:29] -rw-r--r--. 2 boinc boinc     15845 Mar 13 12:28 start_atlas.sh
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc         0 Mar 13 12:28 boinc_lockfile
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc      2512 Mar 13 12:28 pandaJob.out
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc   1006495 Mar 13 12:28 agis_schedconf.cvmfs.json
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc   1511578 Mar 13 12:28 agis_ddmendpoints.agis.ALL.json
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc       445 Mar 13 12:28 workernode_map.json
[2026-03-13 13:35:29] drwx------. 5 boinc boinc      4096 Mar 13 12:28 pilot3
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc 147175608 Mar 13 13:34 HITS.48700890._003045.pool.root.1
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc       528 Mar 13 13:34 boinc_task_state.xml
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc      1032 Mar 13 13:34 memory_monitor_summary.json
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc    264938 Mar 13 13:34 log.48700890._003045.job.log.tgz.1
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc      6351 Mar 13 13:34 heartbeat.json
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc        95 Mar 13 13:35 pilot_heartbeat.json
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc       823 Mar 13 13:35 pilotlog.txt
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc    590510 Mar 13 13:35 log.48700890._003045.job.log.1
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc       357 Mar 13 13:35 output.list
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc       620 Mar 13 13:35 runtime_log
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc    870400 Mar 13 13:35 result.tar.gz
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc      9221 Mar 13 13:35 runtime_log.err
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc       662 Mar 13 13:35 hYELDm1kyH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm34JLDmQ8Pdon.diag
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc        26 Mar 13 13:35 wrapper_checkpoint.txt
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc      8192 Mar 13 13:35 boinc_mmap_file
[2026-03-13 13:35:29] -rw-r--r--. 1 boinc boinc     22690 Mar 13 13:35 stderr.txt
[2026-03-13 13:35:29] HITS file was successfully produced:
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc 147175608 Mar 13 13:34 shared/HITS.pool.root.1
[2026-03-13 13:35:29]  *** Contents of shared directory: ***
[2026-03-13 13:35:29] total 328628
[2026-03-13 13:35:29] -rw-r--r--. 2 boinc boinc 187841294 Mar 13 12:28 ATLAS.root_0
[2026-03-13 13:35:29] -rw-r--r--. 2 boinc boinc    597927 Mar 13 12:28 input.tar.gz
[2026-03-13 13:35:29] -rw-r--r--. 2 boinc boinc     15845 Mar 13 12:28 start_atlas.sh
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc 147175608 Mar 13 13:34 HITS.pool.root.1
[2026-03-13 13:35:29] -rw-------. 1 boinc boinc    870400 Mar 13 13:35 result.tar.gz
13:35:30 (2458228): run_atlas exited; CPU time 15008.350490
13:35:30 (2458228): called boinc_finish(0)

</stderr_txt>
]]>

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