Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:30:24 (3525112): wrapper (7.7.26015): starting
04:30:24 (3525112): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 04:30:24] Arguments: --nthreads 4
[2026-03-12 04:30:24] Threads: 4
[2026-03-12 04:30:24] Checking for CVMFS
[2026-03-12 04:30:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 04:30:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 04:30:49] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 04:30:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 04:30:50] 2.9.2.0 55405 20991 106712 157181 2 50 34498732 36864000 0 130560 0 9446141 99.984 788339 8196 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 04:30:50] CVMFS is ok
[2026-03-12 04:30:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 04:30:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 04:30:50] Further information can be found at the LHC@home message board.
[2026-03-12 04:30:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 04:30:50] Checking for apptainer binary...
[2026-03-12 04:30:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 04:30:50] Running /usr/bin/apptainer --version
[2026-03-12 04:30:50] apptainer version 1.4.1-1.1
[2026-03-12 04:30:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 04:30:50] magicA250
[2026-03-12 04:30:50] apptainer works
[2026-03-12 04:30:50] Set ATHENA_PROC_NUMBER=4
[2026-03-12 04:30:50] Set ATHENA_CORE_NUMBER=4
[2026-03-12 04:30:50] Starting ATLAS job with PandaID=7036254894
[2026-03-12 04:30:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 05:51:20]  *** The last 200 lines of the pilot log: ***
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | job 7036254894 has completed (purged errors)
[2026-03-12 05:51:20] 2026-03-12 04:50:48,555 | INFO     | overall cleanup function is called
[2026-03-12 05:51:20] 2026-03-12 04:50:49,562 | INFO     | --- collectZombieJob: --- 10, [3533753]
[2026-03-12 05:51:20] 2026-03-12 04:50:49,562 | INFO     | zombie collector waiting for pid 3533753
[2026-03-12 05:51:20] 2026-03-12 04:50:49,562 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 05:51:20] 2026-03-12 04:50:49,562 | INFO     | collected zombie processes
[2026-03-12 05:51:20] 2026-03-12 04:50:49,562 | INFO     | will attempt to kill all subprocesses of pid=3533753
[2026-03-12 05:51:20] 2026-03-12 04:50:49,603 | INFO     | process IDs to be killed: [3533753] (in reverse order)
[2026-03-12 05:51:20] 2026-03-12 04:50:49,636 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 05:51:20] 2026-03-12 04:50:49,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 05:51:20] 2026-03-12 04:50:49,639 | INFO     | did not find any defunct processes belonging to 3533753
[2026-03-12 05:51:20] 2026-03-12 04:50:49,640 | INFO     | did not find any defunct processes belonging to 3533753
[2026-03-12 05:51:20] 2026-03-12 04:50:49,640 | INFO     | ready for new job
[2026-03-12 05:51:20] 2026-03-12 04:50:49,640 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 05:51:20] 2026-03-12 04:50:49,641 | INFO     | **************************************
[2026-03-12 05:51:20] 2026-03-12 04:50:49,641 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 05:51:20] 2026-03-12 04:50:49,641 | INFO     | **************************************
[2026-03-12 05:51:20] 2026-03-12 04:50:49,641 | INFO     | 
[2026-03-12 05:51:20] 2026-03-12 04:50:49,641 | INFO     | architecture information:
[2026-03-12 05:51:20] 2026-03-12 04:50:49,641 | INFO     | executing command: cat /etc/os-release
[2026-03-12 05:51:20] 2026-03-12 04:50:49,656 | INFO     | cat /etc/os-release:
[2026-03-12 05:51:20] NAME="CentOS Linux"
[2026-03-12 05:51:20] VERSION="7 (Core)"
[2026-03-12 05:51:20] ID="centos"
[2026-03-12 05:51:20] ID_LIKE="rhel fedora"
[2026-03-12 05:51:20] VERSION_ID="7"
[2026-03-12 05:51:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 05:51:20] ANSI_COLOR="0;31"
[2026-03-12 05:51:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 05:51:20] HOME_URL="https://www.centos.org/"
[2026-03-12 05:51:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 05:51:20] 
[2026-03-12 05:51:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 05:51:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 05:51:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 05:51:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 05:51:20] 
[2026-03-12 05:51:20] 2026-03-12 04:50:49,656 | INFO     | **************************************
[2026-03-12 05:51:20] 2026-03-12 04:50:50,159 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 05:51:20] 2026-03-12 04:50:50,176 | INFO     | sufficient remaining disk space (324719869952 B)
[2026-03-12 05:51:20] 2026-03-12 04:50:50,176 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 05:51:20] 2026-03-12 04:50:50,176 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 05:51:20] 2026-03-12 04:50:50,176 | INFO     | update_server=False
[2026-03-12 05:51:20] 2026-03-12 04:50:50,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 05:51:20] 2026-03-12 04:50:50,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 05:51:20] 2026-03-12 04:50:50,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 05:51:20] 2026-03-12 04:50:50,188 | INFO     | all payload control threads have been joined
[2026-03-12 05:51:20] 2026-03-12 04:50:50,447 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 05:51:20] 2026-03-12 04:50:50,447 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 05:51:20] 2026-03-12 04:50:50,447 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 05:51:20] 2026-03-12 04:50:50,447 | INFO     | will abort loop
[2026-03-12 05:51:20] 2026-03-12 04:50:50,595 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 05:51:20] 2026-03-12 04:50:50,987 | INFO     | all data control threads have been joined
[2026-03-12 05:51:20] 2026-03-12 04:50:51,182 | INFO     | [job] retrieve thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:51,182 | INFO     | [job] queue monitor thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:51,190 | INFO     | [payload] control thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:51,453 | INFO     | [job] job monitor thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:51,570 | INFO     | [payload] validate_post thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:51,630 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:51,750 | INFO     | all job control threads have been joined
[2026-03-12 05:51:20] 2026-03-12 04:50:51,993 | INFO     | [data] control thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:52,121 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:52,300 | INFO     | [data] copytool_in thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:52,324 | INFO     | [job] validate thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:52,370 | INFO     | [payload] failed_post thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:52,459 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:52,602 | INFO     | [data] copytool_out thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:52,751 | INFO     | [job] control thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:50:54,183 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:51:01,072 | INFO     | job.realtimelogging is not enabled
[2026-03-12 05:51:20] 2026-03-12 04:51:02,077 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 05:51:20] 2026-03-12 04:51:08,932 | INFO     | [monitor] cgroup control has ended
[2026-03-12 05:51:20] 2026-03-12 04:51:10,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140508961363776)>', '<ExcThread(monitor, started 140508043147008)>']
[2026-03-12 05:51:20] 2026-03-12 04:51:15,360 | INFO     | all workflow threads have been joined
[2026-03-12 05:51:20] 2026-03-12 04:51:15,360 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 05:51:20] 2026-03-12 04:51:15,360 | INFO     | traces error code: 0
[2026-03-12 05:51:20] 2026-03-12 04:51:15,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 05:51:20] 2026-03-12 04:51:19,973 | INFO     | PID=3529225 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 05:51:20] 2026-03-12 04:51:19,973 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 05:51:20] 2026-03-12 04:51:19,973 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 05:51:20] 2026-03-12 04:51:19,973 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 05:51:20] 2026-03-12 04:51:19,973 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 05:51:20] 2026-03-12 04:51:19,973 | INFO     | [monitor] control thread has ended
[2026-03-12 05:51:20] 2026-03-12 04:51:20,049 [wrapper] ==== pilot stdout END ====
[2026-03-12 05:51:20] 2026-03-12 04:51:20,054 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 05:51:20] 2026-03-12 04:51:20,058 [wrapper] pilotpid: 3529225
[2026-03-12 05:51:20] 2026-03-12 04:51:20,062 [wrapper] Pilot exit status: 0
[2026-03-12 05:51:20] 2026-03-12 04:51:20,074 [wrapper] pandaids: 7036254894
[2026-03-12 05:51:20] 2026-03-12 04:51:20,096 [wrapper] cleanup supervisor_pilot 3539249 3529226
[2026-03-12 05:51:20] 2026-03-12 04:51:20,100 [wrapper] Test setup, not cleaning
[2026-03-12 05:51:20] 2026-03-12 04:51:20,104 [wrapper] apfmon messages muted
[2026-03-12 05:51:20] 2026-03-12 04:51:20,108 [wrapper] ==== wrapper stdout END ====
[2026-03-12 05:51:20] 2026-03-12 04:51:20,112 [wrapper] ==== wrapper stderr END ====
[2026-03-12 05:51:20]  *** Error codes and diagnostics ***
[2026-03-12 05:51:20]     "exeErrorCode": 0,
[2026-03-12 05:51:20]     "exeErrorDiag": "",
[2026-03-12 05:51:20]     "pilotErrorCode": 0,
[2026-03-12 05:51:20]     "pilotErrorDiag": "",
[2026-03-12 05:51:20]  *** Listing of results directory ***
[2026-03-12 05:51:20] total 486208
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc    584627 Mar  3 09:25 pilot3.tar.gz
[2026-03-12 05:51:20] -rwx------ 1 boinc boinc     36322 Mar  3 10:01 runpilot2-wrapper.sh
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc      5111 Mar  3 10:02 queuedata.json
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc       100 Mar 12 04:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 05:51:20] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 04:30 run_atlas
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc       105 Mar 12 04:30 job.xml
[2026-03-12 05:51:20] -rw-r--r-- 2 boinc boinc 281451223 Mar 12 04:30 EVNT.48343768._000108.pool.root.1
[2026-03-12 05:51:20] -rw-r--r-- 2 boinc boinc    597954 Mar 12 04:30 input.tar.gz
[2026-03-12 05:51:20] -rw-r--r-- 2 boinc boinc     15845 Mar 12 04:30 start_atlas.sh
[2026-03-12 05:51:20] drwxrwx--x 2 boinc boinc      4096 Mar 12 04:30 shared
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc         0 Mar 12 04:30 boinc_setup_complete
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc      6378 Mar 12 04:30 init_data.xml
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc         0 Mar 12 04:30 boinc_lockfile
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc      2564 Mar 12 04:30 pandaJob.out
[2026-03-12 05:51:20] -rw------- 1 boinc boinc   1006227 Mar 12 04:30 agis_schedconf.cvmfs.json
[2026-03-12 05:51:20] -rw------- 1 boinc boinc   1511578 Mar 12 04:30 agis_ddmendpoints.agis.ALL.json
[2026-03-12 05:51:20] -rw------- 1 boinc boinc       430 Mar 12 04:31 workernode_map.json
[2026-03-12 05:51:20] drwx------ 5 boinc boinc      4096 Mar 12 04:31 pilot3
[2026-03-12 05:51:20] -rw------- 1 boinc boinc 210577232 Mar 12 05:50 HITS.48838605._002810.pool.root.1
[2026-03-12 05:51:20] -rw------- 1 boinc boinc        95 Mar 12 05:50 pilot_heartbeat.json
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc       529 Mar 12 05:50 boinc_task_state.xml
[2026-03-12 05:51:20] -rw------- 1 boinc boinc      1024 Mar 12 05:50 memory_monitor_summary.json
[2026-03-12 05:51:20] -rw------- 1 boinc boinc    265630 Mar 12 05:50 log.48838605._002810.job.log.tgz.1
[2026-03-12 05:51:20] -rw------- 1 boinc boinc      6328 Mar 12 05:50 heartbeat.json
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc      8192 Mar 12 05:51 boinc_mmap_file
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc        27 Mar 12 05:51 wrapper_checkpoint.txt
[2026-03-12 05:51:20] -rw------- 1 boinc boinc       747 Mar 12 05:51 pilotlog.txt
[2026-03-12 05:51:20] -rw------- 1 boinc boinc    703356 Mar 12 05:51 log.48838605._002810.job.log.1
[2026-03-12 05:51:20] -rw------- 1 boinc boinc       357 Mar 12 05:51 output.list
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc       620 Mar 12 05:51 runtime_log
[2026-03-12 05:51:20] -rw------- 1 boinc boinc    983040 Mar 12 05:51 result.tar.gz
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc      8911 Mar 12 05:51 runtime_log.err
[2026-03-12 05:51:20] -rw------- 1 boinc boinc       660 Mar 12 05:51 APtMDmdoaH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmbHGLDmCmVIpm.diag
[2026-03-12 05:51:20] -rw-r--r-- 1 boinc boinc     12152 Mar 12 05:51 stderr.txt
[2026-03-12 05:51:20] HITS file was successfully produced:
[2026-03-12 05:51:20] -rw------- 1 boinc boinc 210577232 Mar 12 05:50 shared/HITS.pool.root.1
[2026-03-12 05:51:20]  *** Contents of shared directory: ***
[2026-03-12 05:51:20] total 482064
[2026-03-12 05:51:20] -rw-r--r-- 2 boinc boinc 281451223 Mar 12 04:30 ATLAS.root_0
[2026-03-12 05:51:20] -rw-r--r-- 2 boinc boinc    597954 Mar 12 04:30 input.tar.gz
[2026-03-12 05:51:20] -rw-r--r-- 2 boinc boinc     15845 Mar 12 04:30 start_atlas.sh
[2026-03-12 05:51:20] -rw------- 1 boinc boinc 210577232 Mar 12 05:50 HITS.pool.root.1
[2026-03-12 05:51:20] -rw------- 1 boinc boinc    983040 Mar 12 05:51 result.tar.gz
05:51:21 (3525112): run_atlas exited; CPU time 17873.677449
05:51:21 (3525112): called boinc_finish(0)

</stderr_txt>
]]>

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