Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:54:17 (3562756): wrapper (7.7.26015): starting
09:54:17 (3562756): wrapper: running run_atlas (--nthreads 8)
[2026-03-11 09:54:17] Arguments: --nthreads 8
[2026-03-11 09:54:17] Threads: 8
[2026-03-11 09:54:17] Checking for CVMFS
[2026-03-11 09:54:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 09:54:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 09:54:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 09:54:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 09:54:19] 2.13.3.0 7314 181275 295008 157156 3 899 22095454 40959945 68441 16776704 0 2198868241 99.729 1530900425 47513 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-11 09:54:19] CVMFS is ok
[2026-03-11 09:54:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 09:54:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 09:54:19] Further information can be found at the LHC@home message board.
[2026-03-11 09:54:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 09:54:19] Checking for apptainer binary...
[2026-03-11 09:54:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 09:54:19] Running /usr/bin/apptainer --version
[2026-03-11 09:54:19] apptainer version 1.4.5-2.el9
[2026-03-11 09:54:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 09:54:20] c8-16-1.aglt2.org
[2026-03-11 09:54:20] apptainer works
[2026-03-11 09:54:20] Set ATHENA_PROC_NUMBER=8
[2026-03-11 09:54:20] Set ATHENA_CORE_NUMBER=8
[2026-03-11 09:54:20] Starting ATLAS job with PandaID=7036245560
[2026-03-11 09:54:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:40:06 (3562756): BOINC client no longer exists - exiting
16:40:06 (3562756): timer handler: client dead, exiting
16:49:22 (468055): wrapper (7.7.26015): starting
16:49:22 (468055): wrapper: running run_atlas (--nthreads 9)
[2026-03-11 16:49:22] Arguments: --nthreads 9
[2026-03-11 16:49:22] Threads: 9
[2026-03-11 16:49:22] This job has been restarted, cleaning up previous attempt
[2026-03-11 16:49:22] Checking for CVMFS
[2026-03-11 16:49:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 16:49:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 16:49:23] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 16:49:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 16:49:24] 2.13.3.0 7314 181690 268972 157170 0 371 25876929 40960000 56808 16776704 0 2205471504 99.729 1534891723 47455 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-11 16:49:24] CVMFS is ok
[2026-03-11 16:49:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 16:49:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 16:49:24] Further information can be found at the LHC@home message board.
[2026-03-11 16:49:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 16:49:24] Checking for apptainer binary...
[2026-03-11 16:49:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 16:49:24] Running /usr/bin/apptainer --version
[2026-03-11 16:49:24] apptainer version 1.4.5-2.el9
[2026-03-11 16:49:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 16:49:25] c8-16-1.aglt2.org
[2026-03-11 16:49:25] apptainer works
[2026-03-11 16:49:25] Set ATHENA_PROC_NUMBER=9
[2026-03-11 16:49:25] Set ATHENA_CORE_NUMBER=9
[2026-03-11 16:49:25] Starting ATLAS job with PandaID=7036245560
[2026-03-11 16:49:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 00:56:42]  *** The last 200 lines of the pilot log: ***
[2026-03-12 00:56:42] 2026-03-12 04:55:58,074 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 00:56:42] 2026-03-12 04:55:58,074 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 00:56:42] 2026-03-12 04:55:58,074 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 00:56:42] 2026-03-12 04:55:58,074 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 00:56:42] 2026-03-12 04:55:58,083 | INFO     | fitting pss+swap vs Time
[2026-03-12 00:56:42] 2026-03-12 04:55:58,083 | INFO     | sum of square deviations: 33653533523.56388
[2026-03-12 00:56:42] 2026-03-12 04:55:58,090 | INFO     | sum of deviations: 97274330438.38373
[2026-03-12 00:56:42] 2026-03-12 04:55:58,090 | INFO     | mean x: 1773276789.096436
[2026-03-12 00:56:42] 2026-03-12 04:55:58,090 | INFO     | mean y: 2506158.5786163523
[2026-03-12 00:56:42] 2026-03-12 04:55:58,090 | INFO     | intersect: -5123086737.0531
[2026-03-12 00:56:42] 2026-03-12 04:55:58,091 | INFO     | chi2: 4.188827607875084
[2026-03-12 00:56:42] 2026-03-12 04:55:58,091 | INFO     | sum of square deviations: 32606309313.51701
[2026-03-12 00:56:42] 2026-03-12 04:55:58,098 | INFO     | sum of deviations: 194067528524.27533
[2026-03-12 00:56:42] 2026-03-12 04:55:58,098 | INFO     | mean x: 1773276636.5974576
[2026-03-12 00:56:42] 2026-03-12 04:55:58,098 | INFO     | mean y: 2520194.3961864407
[2026-03-12 00:56:42] 2026-03-12 04:55:58,098 | INFO     | intersect: -10551738214.4709
[2026-03-12 00:56:42] 2026-03-12 04:55:58,099 | INFO     | chi2: 1.7473055502013148
[2026-03-12 00:56:42] 2026-03-12 04:55:58,099 | INFO     | current chi2=1.7473055502013148 (change=58.286525162402405 %)
[2026-03-12 00:56:42] 2026-03-12 04:55:58,099 | INFO     | sum of square deviations: 31581010210.66391
[2026-03-12 00:56:42] 2026-03-12 04:55:58,106 | INFO     | sum of deviations: 191347247541.31046
[2026-03-12 00:56:42] 2026-03-12 04:55:58,106 | INFO     | mean x: 1773276484.0963597
[2026-03-12 00:56:42] 2026-03-12 04:55:58,106 | INFO     | mean y: 2519789.7708779443
[2026-03-12 00:56:42] 2026-03-12 04:55:58,106 | INFO     | intersect: -10741644886.981483
[2026-03-12 00:56:42] 2026-03-12 04:55:58,106 | INFO     | chi2: 1.7467594345784938
[2026-03-12 00:56:42] 2026-03-12 04:55:58,106 | INFO     | current chi2=1.7467594345784938 (change=0.03125472947522603 %)
[2026-03-12 00:56:42] 2026-03-12 04:55:58,107 | INFO     | right removable region: 466
[2026-03-12 00:56:42] 2026-03-12 04:55:58,107 | INFO     | sum of square deviations: 32606281253.517002
[2026-03-12 00:56:42] 2026-03-12 04:55:58,114 | INFO     | sum of deviations: 13700102614.741531
[2026-03-12 00:56:42] 2026-03-12 04:55:58,114 | INFO     | mean x: 1773276941.5974576
[2026-03-12 00:56:42] 2026-03-12 04:55:58,114 | INFO     | mean y: 2518280.4512711866
[2026-03-12 00:56:42] 2026-03-12 04:55:58,114 | INFO     | intersect: -742555218.5887265
[2026-03-12 00:56:42] 2026-03-12 04:55:58,114 | INFO     | chi2: 2.6397370673979395
[2026-03-12 00:56:42] 2026-03-12 04:55:58,114 | INFO     | current chi2=2.6397370673979395 (change=36.981482302227526 %)
[2026-03-12 00:56:42] 2026-03-12 04:55:58,115 | INFO     | sum of square deviations: 31580982883.46895
[2026-03-12 00:56:42] 2026-03-12 04:55:58,122 | INFO     | sum of deviations: -11980661925.327652
[2026-03-12 00:56:42] 2026-03-12 04:55:58,122 | INFO     | mean x: 1773277094.098501
[2026-03-12 00:56:42] 2026-03-12 04:55:58,122 | INFO     | mean y: 2522100.2462526765
[2026-03-12 00:56:42] 2026-03-12 04:55:58,122 | INFO     | intersect: 675238128.2025033
[2026-03-12 00:56:42] 2026-03-12 04:55:58,122 | INFO     | chi2: 2.551469202345458
[2026-03-12 00:56:42] 2026-03-12 04:55:58,122 | INFO     | current chi2=2.551469202345458 (change=3.34381276615134 %)
[2026-03-12 00:56:42] 2026-03-12 04:55:58,122 | INFO     | left removable region: 20
[2026-03-12 00:56:42] 2026-03-12 04:55:58,123 | INFO     | sum of square deviations: 27509279699.159096
[2026-03-12 00:56:42] 2026-03-12 04:55:58,129 | INFO     | sum of deviations: 54631968002.70625
[2026-03-12 00:56:42] 2026-03-12 04:55:58,129 | INFO     | mean x: 1773277063.5986547
[2026-03-12 00:56:42] 2026-03-12 04:55:58,130 | INFO     | mean y: 2540728.177130045
[2026-03-12 00:56:42] 2026-03-12 04:55:58,130 | INFO     | intersect: -3519093311.6053057
[2026-03-12 00:56:42] 2026-03-12 04:55:58,130 | INFO     | chi2: 0.006617593811683953
[2026-03-12 00:56:42] 2026-03-12 04:55:58,130 | INFO     | current memory leak: 1.99 B/s (using 446 data points, chi2=0.01)
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | could have reported an average CPU frequency of 3799 MHz (20 samples)
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | ..............................
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | . Timing measurements:
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | . get job = 0 s
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | . initial setup = 3 s
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | . payload setup = 21 s
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | . stage-in = 0 s
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | . payload execution = 29091 s
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | . stage-out = 6 s
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | . log creation = 2 s
[2026-03-12 00:56:42] 2026-03-12 04:55:58,131 | INFO     | ..............................
[2026-03-12 00:56:42] 2026-03-12 04:55:58,139 | INFO     | time since job start (29140s) is within the limit (349056.0s)
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | 
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | job summary report
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | --------------------------------------------------
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | PanDA job id: 7036245560
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | task id: 48850139
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | errors: (none)
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | pilot state: finished 
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | transexitcode: 0
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | exeerrorcode: 0
[2026-03-12 00:56:42] 2026-03-12 04:55:58,224 | INFO     | exeerrordiag: 
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | exitcode: 0
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | exitmsg: OK
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | cpuconsumptiontime: 83494 s
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | nevents: 400
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | neventsw: 0
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | pid: 541277
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | pgrp: 541277
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | corecount: 9
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | event service: False
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | sizes: {0: 2280357, 11: 2280357, 29118: 2317577, 29119: 2317576, 29127: 2326686, 29128: 2326824}
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | --------------------------------------------------
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | 
[2026-03-12 00:56:42] 2026-03-12 04:55:58,225 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2026-03-12 00:56:42] 2026-03-12 04:55:58,501 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,502 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,502 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,508 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,509 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 00:56:42] 2026-03-12 04:55:58,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,509 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 00:56:42] 2026-03-12 04:55:58,509 | INFO     | job 7036245560 has completed (purged errors)
[2026-03-12 00:56:42] 2026-03-12 04:55:58,509 | INFO     | overall cleanup function is called
[2026-03-12 00:56:42] 2026-03-12 04:55:59,517 | INFO     | --- collectZombieJob: --- 10, [541277]
[2026-03-12 00:56:42] 2026-03-12 04:55:59,517 | INFO     | zombie collector waiting for pid 541277
[2026-03-12 00:56:42] 2026-03-12 04:55:59,517 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 00:56:42] 2026-03-12 04:55:59,517 | INFO     | collected zombie processes
[2026-03-12 00:56:42] 2026-03-12 04:55:59,517 | INFO     | will attempt to kill all subprocesses of pid=541277
[2026-03-12 00:56:42] 2026-03-12 04:56:04,534 | INFO     | PID=509034 has CPU usage=12.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 00:56:42] 2026-03-12 04:56:04,534 | INFO     | .. there are 96 such processes running
[2026-03-12 00:56:42] 2026-03-12 04:56:04,762 | INFO     | process IDs to be killed: [541277] (in reverse order)
[2026-03-12 00:56:42] 2026-03-12 04:56:06,692 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 00:56:42] 2026-03-12 04:56:06,693 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 00:56:42] 2026-03-12 04:56:06,825 | INFO     | did not find any defunct processes belonging to 541277
[2026-03-12 00:56:42] 2026-03-12 04:56:06,918 | INFO     | did not find any defunct processes belonging to 541277
[2026-03-12 00:56:42] 2026-03-12 04:56:06,918 | INFO     | ready for new job
[2026-03-12 00:56:42] 2026-03-12 04:56:06,918 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 00:56:42] 2026-03-12 04:56:06,920 | INFO     | **************************************
[2026-03-12 00:56:42] 2026-03-12 04:56:06,920 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 00:56:42] 2026-03-12 04:56:06,920 | INFO     | **************************************
[2026-03-12 00:56:42] 2026-03-12 04:56:06,920 | INFO     | 
[2026-03-12 00:56:42] 2026-03-12 04:56:06,930 | INFO     | architecture information:
[2026-03-12 00:56:42] 2026-03-12 04:56:06,934 | INFO     | executing command: cat /etc/os-release
[2026-03-12 00:56:42] 2026-03-12 04:56:07,160 | INFO     | cat /etc/os-release:
[2026-03-12 00:56:42] NAME="CentOS Linux"
[2026-03-12 00:56:42] VERSION="7 (Core)"
[2026-03-12 00:56:42] ID="centos"
[2026-03-12 00:56:42] ID_LIKE="rhel fedora"
[2026-03-12 00:56:42] VERSION_ID="7"
[2026-03-12 00:56:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 00:56:42] ANSI_COLOR="0;31"
[2026-03-12 00:56:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 00:56:42] HOME_URL="https://www.centos.org/"
[2026-03-12 00:56:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 00:56:42] 
[2026-03-12 00:56:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 00:56:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 00:56:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 00:56:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 00:56:42] 
[2026-03-12 00:56:42] 2026-03-12 04:56:07,160 | INFO     | **************************************
[2026-03-12 00:56:42] 2026-03-12 04:56:07,663 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2026-03-12 00:56:42] 2026-03-12 04:56:08,147 | INFO     | sufficient remaining disk space (167144062976 B)
[2026-03-12 00:56:42] 2026-03-12 04:56:08,147 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 00:56:42] 2026-03-12 04:56:08,147 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 00:56:42] 2026-03-12 04:56:08,147 | INFO     | update_server=False
[2026-03-12 00:56:42] 2026-03-12 04:56:08,147 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 00:56:42] 2026-03-12 04:56:08,151 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 00:56:42] 2026-03-12 04:56:08,152 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 00:56:42] 2026-03-12 04:56:08,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 00:56:42] 2026-03-12 04:56:08,536 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 00:56:42] 2026-03-12 04:56:08,536 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 00:56:42] 2026-03-12 04:56:08,537 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 00:56:42] 2026-03-12 04:56:08,537 | INFO     | will abort loop
[2026-03-12 00:56:42] 2026-03-12 04:56:08,733 | INFO     | all job control threads have been joined
[2026-03-12 00:56:42] 2026-03-12 04:56:09,151 | INFO     | all payload control threads have been joined
[2026-03-12 00:56:42] 2026-03-12 04:56:09,157 | INFO     | [job] retrieve thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:09,159 | INFO     | [job] queue monitor thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:09,170 | INFO     | all data control threads have been joined
[2026-03-12 00:56:42] 2026-03-12 04:56:09,442 | INFO     | [payload] validate_post thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:09,546 | INFO     | [job] job monitor thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:09,738 | INFO     | [job] control thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:09,779 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:10,175 | INFO     | [data] control thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:10,196 | INFO     | [payload] control thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:10,197 | INFO     | [data] copytool_out thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:10,214 | INFO     | [payload] failed_post thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:10,280 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:10,313 | INFO     | [data] copytool_in thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:10,314 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:10,506 | INFO     | [job] validate thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:10,507 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:11,260 | INFO     | [monitor] cgroup control has ended
[2026-03-12 00:56:42] 2026-03-12 04:56:12,162 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 00:56:42] 2026-03-12 04:56:13,480 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139808117524288)>', '<ExcThread(monitor, started 139807485323008)>']
[2026-03-12 00:56:42] 2026-03-12 04:56:18,507 | INFO     | all workflow threads have been joined
[2026-03-12 00:56:42] 2026-03-12 04:56:18,507 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 00:56:42] 2026-03-12 04:56:18,508 | INFO     | traces error code: 0
[2026-03-12 00:56:42] 2026-03-12 04:56:18,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 00:56:42] 2026-03-12 04:56:38,736 | INFO     | PID=509034 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 00:56:42] 2026-03-12 04:56:38,737 | INFO     | .. there are 96 such processes running
[2026-03-12 00:56:42] 2026-03-12 04:56:38,739 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 00:56:42] 2026-03-12 04:56:38,739 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 00:56:42] 2026-03-12 04:56:38,739 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 00:56:42] 2026-03-12 04:56:38,739 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 00:56:42] 2026-03-12 04:56:38,739 | CRITICAL | thread 'MainThread' is not alive
[2026-03-12 00:56:42] 2026-03-12 04:56:38,739 | INFO     | [monitor] control thread has ended
[2026-03-12 00:56:42] 2026-03-12 04:56:39,231 [wrapper] ==== pilot stdout END ====
[2026-03-12 00:56:42] 2026-03-12 04:56:39,302 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 00:56:42] 2026-03-12 04:56:39,324 [wrapper] pilotpid: 509034
[2026-03-12 00:56:42] 2026-03-12 04:56:39,364 [wrapper] Pilot exit status: 0
[2026-03-12 00:56:42] 2026-03-12 04:56:39,594 [wrapper] pandaids: 7036245560 7036245560
[2026-03-12 00:56:42] 2026-03-12 04:56:40,232 [wrapper] cleanup supervisor_pilot  681846 509035
[2026-03-12 00:56:42] 2026-03-12 04:56:40,274 [wrapper] Test setup, not cleaning
[2026-03-12 00:56:42] 2026-03-12 04:56:40,329 [wrapper] apfmon messages muted
[2026-03-12 00:56:42] 2026-03-12 04:56:40,385 [wrapper] ==== wrapper stdout END ====
[2026-03-12 00:56:42] 2026-03-12 04:56:40,464 [wrapper] ==== wrapper stderr END ====
[2026-03-12 00:56:42]  *** Error codes and diagnostics ***
[2026-03-12 00:56:42]     "exeErrorCode": 0,
[2026-03-12 00:56:42]     "exeErrorDiag": "",
[2026-03-12 00:56:42]     "pilotErrorCode": 0,
[2026-03-12 00:56:42]     "pilotErrorDiag": "",
[2026-03-12 00:56:42]  *** Listing of results directory ***
[2026-03-12 00:56:42] total 699616
[2026-03-12 00:56:42] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas    584627 Mar  3 03:25 pilot3.tar.gz
[2026-03-12 00:56:42] -rwx------. 1 boincer umatlas     36322 Mar  3 04:01 runpilot2-wrapper.sh
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas      5111 Mar  3 04:02 queuedata.json
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas       100 Mar 11 09:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 00:56:42] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 11 09:54 run_atlas
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas       105 Mar 11 09:54 job.xml
[2026-03-12 00:56:42] -rw-r--r--. 3 boincer umatlas 222641555 Mar 11 09:54 EVNT.48458305._000002.pool.root.1
[2026-03-12 00:56:42] -rw-r--r--. 3 boincer umatlas 222641555 Mar 11 09:54 ATLAS.root_0
[2026-03-12 00:56:42] -rw-r--r--. 2 boincer umatlas     15845 Mar 11 09:54 start_atlas.sh
[2026-03-12 00:56:42] drwxrwx--x. 2 boincer umatlas      4096 Mar 11 09:54 shared
[2026-03-12 00:56:42] -rw-r--r--. 2 boincer umatlas    597987 Mar 11 09:54 input.tar.gz
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas         0 Mar 11 09:54 boinc_lockfile
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas      2673 Mar 11 16:49 pandaJob.out
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas        57 Mar 11 16:49 setup.sh.local
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas   1006235 Mar 11 16:50 agis_schedconf.cvmfs.json
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas       431 Mar 11 16:50 workernode_map.json
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas      7173 Mar 12 00:47 init_data.xml
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas 259378522 Mar 12 00:52 HITS.48850139._000026.pool.root.1
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas       531 Mar 12 00:53 boinc_task_state.xml
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas      1049 Mar 12 00:55 memory_monitor_summary.json
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas   1511578 Mar 12 00:55 agis_ddmendpoints.agis.ALL.json
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas    622039 Mar 12 00:55 log.48850139._000026.job.log.tgz.1
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas      6350 Mar 12 00:55 heartbeat.json
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas        96 Mar 12 00:56 pilot_heartbeat.json
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas       892 Mar 12 00:56 pilotlog.txt
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas   3280763 Mar 12 00:56 log.48850139._000026.job.log.1
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas       357 Mar 12 00:56 output.list
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas        29 Mar 12 00:56 wrapper_checkpoint.txt
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas       620 Mar 12 00:56 runtime_log
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas   3921920 Mar 12 00:56 result.tar.gz
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas      8192 Mar 12 00:56 boinc_mmap_file
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas      9422 Mar 12 00:56 runtime_log.err
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas       786 Mar 12 00:56 fG5KDmjoaH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmW8DLDmY8xVMn.diag
[2026-03-12 00:56:42] -rw-r--r--. 1 boincer umatlas     23401 Mar 12 00:56 stderr.txt
[2026-03-12 00:56:42] HITS file was successfully produced:
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas 259378522 Mar 12 00:52 shared/HITS.pool.root.1
[2026-03-12 00:56:42]  *** Contents of shared directory: ***
[2026-03-12 00:56:42] total 475164
[2026-03-12 00:56:42] -rw-r--r--. 3 boincer umatlas 222641555 Mar 11 09:54 ATLAS.root_0
[2026-03-12 00:56:42] -rw-r--r--. 2 boincer umatlas     15845 Mar 11 09:54 start_atlas.sh
[2026-03-12 00:56:42] -rw-r--r--. 2 boincer umatlas    597987 Mar 11 09:54 input.tar.gz
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas 259378522 Mar 12 00:52 HITS.pool.root.1
[2026-03-12 00:56:42] -rw-------. 1 boincer umatlas   3921920 Mar 12 00:56 result.tar.gz
00:56:43 (468055): run_atlas exited; CPU time 84842.794723
00:56:43 (468055): called boinc_finish(0)

</stderr_txt>
]]>

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