Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:19:39 (3237112): wrapper (7.7.26015): starting
13:19:39 (3237112): wrapper: running run_atlas (--nthreads 3)
[2026-03-12 13:19:39] Arguments: --nthreads 3
[2026-03-12 13:19:39] Threads: 3
[2026-03-12 13:19:39] Checking for CVMFS
[2026-03-12 13:19:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 13:19:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 13:19:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 13:19:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 13:19:40] 2.9.2.0 41941 21592 92504 157201 3 49 25077328 36864001 0 130560 0 9064375 99.983 805562 13800 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 13:19:40] CVMFS is ok
[2026-03-12 13:19:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 13:19:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 13:19:40] Further information can be found at the LHC@home message board.
[2026-03-12 13:19:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 13:19:40] Checking for apptainer binary...
[2026-03-12 13:19:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 13:19:40] Running /usr/bin/apptainer --version
[2026-03-12 13:19:40] apptainer version 1.4.1-1.1
[2026-03-12 13:19:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 13:19:40] thA373
[2026-03-12 13:19:40] apptainer works
[2026-03-12 13:19:40] Set ATHENA_PROC_NUMBER=3
[2026-03-12 13:19:40] Set ATHENA_CORE_NUMBER=3
[2026-03-12 13:19:40] Starting ATLAS job with PandaID=7036240145
[2026-03-12 13:19:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 14:50:03]  *** The last 200 lines of the pilot log: ***
[2026-03-12 14:50:03] 2026-03-12 13:49:18,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 14:50:03] 2026-03-12 13:49:18,441 | INFO     | [job] job monitor thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:18,557 | INFO     | [payload] control thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:18,569 | INFO     | [job] control thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:18,601 | INFO     | [job] validate thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:18,636 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:18,759 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:18,810 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:18,842 | INFO     | [data] copytool_in thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:19,037 | INFO     | [payload] validate_post thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:19,171 | INFO     | [data] control thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:19,645 | INFO     | [payload] failed_post thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:20,199 | INFO     | [data] copytool_out thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:21,070 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:27,594 | INFO     | job.realtimelogging is not enabled
[2026-03-12 14:50:03] 2026-03-12 13:49:28,599 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 14:50:03] 2026-03-12 13:49:46,685 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-03-12 14:50:03] 2026-03-12 13:49:47,590 | INFO     | PID=3241153 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 14:50:03] 2026-03-12 13:49:47,590 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 14:50:03] 2026-03-12 13:49:47,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 14:50:03] 2026-03-12 13:49:47,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 14:50:03] 2026-03-12 13:49:56,362 | INFO     | [monitor] cgroup control has ended
[2026-03-12 14:50:03] 2026-03-12 13:49:57,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140506754279232)>', '<ExcThread(monitor, started 140506398963456)>']
[2026-03-12 14:50:03] 2026-03-12 13:49:58,648 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 14:50:03] 2026-03-12 13:49:58,648 | INFO     | [monitor] control thread has ended
[2026-03-12 14:50:03] 2026-03-12 13:50:02,895 | INFO     | all workflow threads have been joined
[2026-03-12 14:50:03] 2026-03-12 13:50:02,896 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 14:50:03] 2026-03-12 13:50:02,896 | INFO     | traces error code: 0
[2026-03-12 14:50:03] 2026-03-12 13:50:02,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 14:50:03] 2026-03-12 13:50:02,946 [wrapper] ==== pilot stdout END ====
[2026-03-12 14:50:03] 2026-03-12 13:50:02,948 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 14:50:03] 2026-03-12 13:50:02,951 [wrapper] pilotpid: 3241153
[2026-03-12 14:50:03] 2026-03-12 13:50:02,953 [wrapper] Pilot exit status: 0
[2026-03-12 14:50:03] 2026-03-12 13:50:02,960 [wrapper] pandaids: 7036240145
[2026-03-12 14:50:03] 2026-03-12 13:50:02,976 [wrapper] cleanup supervisor_pilot 3250819 3241154
[2026-03-12 14:50:03] 2026-03-12 13:50:02,978 [wrapper] Test setup, not cleaning
[2026-03-12 14:50:03] 2026-03-12 13:50:02,980 [wrapper] apfmon messages muted
[2026-03-12 14:50:03] 2026-03-12 13:50:02,983 [wrapper] ==== wrapper stdout END ====
[2026-03-12 14:50:03] 2026-03-12 13:50:02,985 [wrapper] ==== wrapper stderr END ====
[2026-03-12 14:50:03]  *** Error codes and diagnostics ***
[2026-03-12 14:50:03]     "exeErrorCode": 0,
[2026-03-12 14:50:03]     "exeErrorDiag": "",
[2026-03-12 14:50:03]     "pilotErrorCode": 0,
[2026-03-12 14:50:03]     "pilotErrorDiag": "",
[2026-03-12 14:50:03]  *** Listing of results directory ***
[2026-03-12 14:50:03] total 501784
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc    584627 Mar  3 09:25 pilot3.tar.gz
[2026-03-12 14:50:03] -rwx------ 1 boinc boinc     36322 Mar  3 09:25 runpilot2-wrapper.sh
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc      5111 Mar  3 09:26 queuedata.json
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc       100 Mar 12 13:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 14:50:03] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 13:19 run_atlas
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc       105 Mar 12 13:19 job.xml
[2026-03-12 14:50:03] -rw-r--r-- 2 boinc boinc 295010036 Mar 12 13:19 EVNT.48717036._000018.pool.root.1
[2026-03-12 14:50:03] drwxrwx--x 2 boinc boinc      4096 Mar 12 13:19 shared
[2026-03-12 14:50:03] -rw-r--r-- 2 boinc boinc    597944 Mar 12 13:19 input.tar.gz
[2026-03-12 14:50:03] -rw-r--r-- 2 boinc boinc     15845 Mar 12 13:19 start_atlas.sh
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc         0 Mar 12 13:19 boinc_setup_complete
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc      6438 Mar 12 13:19 init_data.xml
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc         0 Mar 12 13:19 boinc_lockfile
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc      2595 Mar 12 13:19 pandaJob.out
[2026-03-12 14:50:03] -rw------- 1 boinc boinc   1006233 Mar 12 13:19 agis_schedconf.cvmfs.json
[2026-03-12 14:50:03] -rw------- 1 boinc boinc   1511578 Mar 12 13:19 agis_ddmendpoints.agis.ALL.json
[2026-03-12 14:50:03] -rw------- 1 boinc boinc       427 Mar 12 13:19 workernode_map.json
[2026-03-12 14:50:03] drwx------ 5 boinc boinc      4096 Mar 12 13:19 pilot3
[2026-03-12 14:50:03] -rw------- 1 boinc boinc 212796868 Mar 12 14:48 HITS.48868979._000444.pool.root.1
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc       529 Mar 12 14:49 boinc_task_state.xml
[2026-03-12 14:50:03] -rw------- 1 boinc boinc      1018 Mar 12 14:49 memory_monitor_summary.json
[2026-03-12 14:50:03] -rw------- 1 boinc boinc        95 Mar 12 14:49 pilot_heartbeat.json
[2026-03-12 14:50:03] -rw------- 1 boinc boinc    267090 Mar 12 14:49 log.48868979._000444.job.log.tgz.1
[2026-03-12 14:50:03] -rw------- 1 boinc boinc      6306 Mar 12 14:49 heartbeat.json
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc      8192 Mar 12 14:49 boinc_mmap_file
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc        27 Mar 12 14:49 wrapper_checkpoint.txt
[2026-03-12 14:50:03] -rw------- 1 boinc boinc      5006 Mar 12 14:50 pilotlog.txt
[2026-03-12 14:50:03] -rw------- 1 boinc boinc    782447 Mar 12 14:50 log.48868979._000444.job.log.1
[2026-03-12 14:50:03] -rw------- 1 boinc boinc       357 Mar 12 14:50 output.list
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc       620 Mar 12 14:50 runtime_log
[2026-03-12 14:50:03] -rw------- 1 boinc boinc   1064960 Mar 12 14:50 result.tar.gz
[2026-03-12 14:50:03] -rw------- 1 boinc boinc       657 Mar 12 14:50 yZ2LDmvFaH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmfxDLDmPceOLo.diag
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc      8896 Mar 12 14:50 runtime_log.err
[2026-03-12 14:50:03] -rw-r--r-- 1 boinc boinc      6429 Mar 12 14:50 stderr.txt
[2026-03-12 14:50:03] HITS file was successfully produced:
[2026-03-12 14:50:03] -rw------- 1 boinc boinc 212796868 Mar 12 14:48 shared/HITS.pool.root.1
[2026-03-12 14:50:03]  *** Contents of shared directory: ***
[2026-03-12 14:50:03] total 497556
[2026-03-12 14:50:03] -rw-r--r-- 2 boinc boinc 295010036 Mar 12 13:19 ATLAS.root_0
[2026-03-12 14:50:03] -rw-r--r-- 2 boinc boinc    597944 Mar 12 13:19 input.tar.gz
[2026-03-12 14:50:03] -rw-r--r-- 2 boinc boinc     15845 Mar 12 13:19 start_atlas.sh
[2026-03-12 14:50:03] -rw------- 1 boinc boinc 212796868 Mar 12 14:48 HITS.pool.root.1
[2026-03-12 14:50:03] -rw------- 1 boinc boinc   1064960 Mar 12 14:50 result.tar.gz
14:50:04 (3237112): run_atlas exited; CPU time 15303.178958
14:50:04 (3237112): called boinc_finish(0)

</stderr_txt>
]]>

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