Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:08:43 (4827): wrapper (7.7.26015): starting
03:08:43 (4827): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 03:08:43] Arguments: --nthreads 8
[2026-03-12 03:08:43] Threads: 8
[2026-03-12 03:08:43] Checking for CVMFS
[2026-03-12 03:08:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 03:08:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 03:08:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 03:08:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 03:08:47] 2.11.2.0 9196 124076 136572 157178 0 54 21070481 25165825 4884 130560 159 42822868 99.808 33775474 1019 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-12 03:08:47] CVMFS is ok
[2026-03-12 03:08:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 03:08:47] Checking for apptainer binary...
[2026-03-12 03:08:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 03:08:47] Running /usr/bin/apptainer --version
[2026-03-12 03:08:47] apptainer version 1.3.2-1.el7
[2026-03-12 03:08:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 03:08:54] cg-vwn422.simple-grid.lan
[2026-03-12 03:08:54] apptainer works
[2026-03-12 03:08:54] Set ATHENA_PROC_NUMBER=8
[2026-03-12 03:08:54] Set ATHENA_CORE_NUMBER=8
[2026-03-12 03:08:54] Starting ATLAS job with PandaID=7049824079
[2026-03-12 03:08:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 08:06:35]  *** The last 200 lines of the pilot log: ***
[2026-03-12 08:06:35] 2026-03-12 07:05:34,656 | INFO     | total number of processed events: 400 (read)
[2026-03-12 08:06:35] 2026-03-12 07:05:34,658 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7049824079/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 08:06:35] 2026-03-12 07:05:34,659 | INFO     | extracted standard info from prmon json
[2026-03-12 08:06:35] 2026-03-12 07:05:34,659 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 08:06:35] 2026-03-12 07:05:34,659 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 08:06:35] 2026-03-12 07:05:34,660 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 08:06:35] 2026-03-12 07:05:34,660 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 08:06:35] 2026-03-12 07:05:34,665 | INFO     | fitting pss+swap vs Time
[2026-03-12 08:06:35] 2026-03-12 07:05:34,666 | INFO     | sum of square deviations: 7028008982.0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,669 | INFO     | sum of deviations: 29924262236.00005
[2026-03-12 08:06:35] 2026-03-12 07:05:34,669 | INFO     | mean x: 1773290495.0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,669 | INFO     | mean y: 2482469.9893992934
[2026-03-12 08:06:35] 2026-03-12 07:05:34,669 | INFO     | intersect: -7547936137.740596
[2026-03-12 08:06:35] 2026-03-12 07:05:34,670 | INFO     | chi2: 5.348645149578495
[2026-03-12 08:06:35] 2026-03-12 07:05:34,670 | INFO     | sum of square deviations: 6662039329.5
[2026-03-12 08:06:35] 2026-03-12 07:05:34,677 | INFO     | sum of deviations: 48142660827.99999
[2026-03-12 08:06:35] 2026-03-12 07:05:34,677 | INFO     | mean x: 1773290342.5
[2026-03-12 08:06:35] 2026-03-12 07:05:34,678 | INFO     | mean y: 2489950.007194245
[2026-03-12 08:06:35] 2026-03-12 07:05:34,678 | INFO     | intersect: -12812041950.234934
[2026-03-12 08:06:35] 2026-03-12 07:05:34,678 | INFO     | chi2: 4.6170547659698995
[2026-03-12 08:06:35] 2026-03-12 07:05:34,678 | INFO     | current chi2=4.6170547659698995 (change=13.67805048099422 %)
[2026-03-12 08:06:35] 2026-03-12 07:05:34,678 | INFO     | right removable region: 277
[2026-03-12 08:06:35] 2026-03-12 07:05:34,679 | INFO     | sum of square deviations: 6662039329.5
[2026-03-12 08:06:35] 2026-03-12 07:05:34,682 | INFO     | sum of deviations: -61405700965.5
[2026-03-12 08:06:35] 2026-03-12 07:05:34,682 | INFO     | mean x: 1773290647.5
[2026-03-12 08:06:35] 2026-03-12 07:05:34,682 | INFO     | mean y: 2520471.737410072
[2026-03-12 08:06:35] 2026-03-12 07:05:34,682 | INFO     | intersect: 16347388737.99475
[2026-03-12 08:06:35] 2026-03-12 07:05:34,683 | INFO     | chi2: 1.3666569986047885
[2026-03-12 08:06:35] 2026-03-12 07:05:34,683 | INFO     | current chi2=1.3666569986047885 (change=74.44853864136996 %)
[2026-03-12 08:06:35] 2026-03-12 07:05:34,683 | INFO     | sum of square deviations: 6309000152.0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,686 | INFO     | sum of deviations: -81031964521.0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,686 | INFO     | mean x: 1773290800.0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,686 | INFO     | mean y: 2528880.8974358975
[2026-03-12 08:06:35] 2026-03-12 07:05:34,686 | INFO     | intersect: 22778441660.906464
[2026-03-12 08:06:35] 2026-03-12 07:05:34,687 | INFO     | chi2: 1.0239970392773177
[2026-03-12 08:06:35] 2026-03-12 07:05:34,687 | INFO     | current chi2=1.0239970392773177 (change=25.07285732098765 %)
[2026-03-12 08:06:35] 2026-03-12 07:05:34,687 | INFO     | sum of square deviations: 5968658887.0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,690 | INFO     | sum of deviations: -76071215435.49998
[2026-03-12 08:06:35] 2026-03-12 07:05:34,690 | INFO     | mean x: 1773290952.5
[2026-03-12 08:06:35] 2026-03-12 07:05:34,690 | INFO     | mean y: 2526640.7350746267
[2026-03-12 08:06:35] 2026-03-12 07:05:34,690 | INFO     | intersect: 22603315298.84732
[2026-03-12 08:06:35] 2026-03-12 07:05:34,691 | INFO     | chi2: 1.0139524384361425
[2026-03-12 08:06:35] 2026-03-12 07:05:34,691 | INFO     | current chi2=1.0139524384361425 (change=0.9809208870627343 %)
[2026-03-12 08:06:35] 2026-03-12 07:05:34,691 | INFO     | left removable region: 30
[2026-03-12 08:06:35] 2026-03-12 07:05:34,696 | INFO     | sum of square deviations: 4672638308.0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,698 | INFO     | sum of deviations: -31092897491.0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,698 | INFO     | mean x: 1773291227.0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,698 | INFO     | mean y: 2522447.882591093
[2026-03-12 08:06:35] 2026-03-12 07:05:34,698 | INFO     | intersect: 11802443329.496998
[2026-03-12 08:06:35] 2026-03-12 07:05:34,699 | INFO     | chi2: 0.17896659452606972
[2026-03-12 08:06:35] 2026-03-12 07:05:34,699 | INFO     | current memory leak: -6.65 B/s (using 247 data points, chi2=0.18)
[2026-03-12 08:06:35] 2026-03-12 07:05:34,700 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-03-12 08:06:35] 2026-03-12 07:05:34,700 | INFO     | ..............................
[2026-03-12 08:06:35] 2026-03-12 07:05:34,700 | INFO     | . Timing measurements:
[2026-03-12 08:06:35] 2026-03-12 07:05:34,700 | INFO     | . get job = 0 s
[2026-03-12 08:06:35] 2026-03-12 07:05:34,700 | INFO     | . initial setup = 88 s
[2026-03-12 08:06:35] 2026-03-12 07:05:34,700 | INFO     | . payload setup = 126 s
[2026-03-12 08:06:35] 2026-03-12 07:05:34,701 | INFO     | . stage-in = 0 s
[2026-03-12 08:06:35] 2026-03-12 07:05:34,701 | INFO     | . payload execution = 17348 s
[2026-03-12 08:06:35] 2026-03-12 07:05:34,701 | INFO     | . stage-out = 3 s
[2026-03-12 08:06:35] 2026-03-12 07:05:34,701 | INFO     | . log creation = 1 s
[2026-03-12 08:06:35] 2026-03-12 07:05:34,701 | INFO     | ..............................
[2026-03-12 08:06:35] 2026-03-12 07:05:34,840 | INFO     | 
[2026-03-12 08:06:35] 2026-03-12 07:05:34,840 | INFO     | job summary report
[2026-03-12 08:06:35] 2026-03-12 07:05:34,840 | INFO     | --------------------------------------------------
[2026-03-12 08:06:35] 2026-03-12 07:05:34,840 | INFO     | PanDA job id: 7049824079
[2026-03-12 08:06:35] 2026-03-12 07:05:34,841 | INFO     | task id: 48967011
[2026-03-12 08:06:35] 2026-03-12 07:05:34,841 | INFO     | errors: (none)
[2026-03-12 08:06:35] 2026-03-12 07:05:34,841 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 08:06:35] 2026-03-12 07:05:34,841 | INFO     | pilot state: finished 
[2026-03-12 08:06:35] 2026-03-12 07:05:34,841 | INFO     | transexitcode: 0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,841 | INFO     | exeerrorcode: 0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,841 | INFO     | exeerrordiag: 
[2026-03-12 08:06:35] 2026-03-12 07:05:34,841 | INFO     | exitcode: 0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,842 | INFO     | exitmsg: OK
[2026-03-12 08:06:35] 2026-03-12 07:05:34,842 | INFO     | cpuconsumptiontime: 67530 s
[2026-03-12 08:06:35] 2026-03-12 07:05:34,842 | INFO     | nevents: 400
[2026-03-12 08:06:35] 2026-03-12 07:05:34,842 | INFO     | neventsw: 0
[2026-03-12 08:06:35] 2026-03-12 07:05:34,842 | INFO     | pid: 13457
[2026-03-12 08:06:35] 2026-03-12 07:05:34,842 | INFO     | pgrp: 13457
[2026-03-12 08:06:35] 2026-03-12 07:05:34,842 | INFO     | corecount: 8
[2026-03-12 08:06:35] 2026-03-12 07:05:34,842 | INFO     | event service: False
[2026-03-12 08:06:35] 2026-03-12 07:05:34,842 | INFO     | sizes: {0: 2279146, 1: 2280204, 2: 2280264, 12: 2280292, 17479: 2312406, 17484: 2321404, 17487: 2321782}
[2026-03-12 08:06:35] 2026-03-12 07:05:34,843 | INFO     | --------------------------------------------------
[2026-03-12 08:06:35] 2026-03-12 07:05:34,843 | INFO     | 
[2026-03-12 08:06:35] 2026-03-12 07:05:34,843 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-03-12 08:06:35] 2026-03-12 07:05:35,304 | INFO     | PID=8909 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-12 08:06:35] 2026-03-12 07:05:35,304 | INFO     | .. there are 9 such processes running
[2026-03-12 08:06:35] 2026-03-12 07:05:35,309 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,310 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,310 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,310 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,310 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,310 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,310 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,310 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,310 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,310 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,311 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,311 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,311 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,311 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,311 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,311 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,311 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,311 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 08:06:35] 2026-03-12 07:05:35,311 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,312 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 08:06:35] 2026-03-12 07:05:35,312 | INFO     | job 7049824079 has completed (purged errors)
[2026-03-12 08:06:35] 2026-03-12 07:05:35,312 | INFO     | overall cleanup function is called
[2026-03-12 08:06:35] 2026-03-12 07:05:36,323 | INFO     | --- collectZombieJob: --- 10, [13457]
[2026-03-12 08:06:35] 2026-03-12 07:05:36,323 | INFO     | zombie collector waiting for pid 13457
[2026-03-12 08:06:35] 2026-03-12 07:05:36,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 08:06:35] 2026-03-12 07:05:36,323 | INFO     | collected zombie processes
[2026-03-12 08:06:35] 2026-03-12 07:05:36,324 | INFO     | will attempt to kill all subprocesses of pid=13457
[2026-03-12 08:06:35] 2026-03-12 07:05:36,465 | INFO     | process IDs to be killed: [13457] (in reverse order)
[2026-03-12 08:06:35] 2026-03-12 07:05:37,668 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 08:06:35] 2026-03-12 07:05:37,668 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 08:06:35] 2026-03-12 07:05:37,671 | INFO     | did not find any defunct processes belonging to 13457
[2026-03-12 08:06:35] 2026-03-12 07:05:37,673 | INFO     | did not find any defunct processes belonging to 13457
[2026-03-12 08:06:35] 2026-03-12 07:05:37,674 | INFO     | ready for new job
[2026-03-12 08:06:35] 2026-03-12 07:05:37,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 08:06:35] 2026-03-12 07:05:37,676 | INFO     | **************************************
[2026-03-12 08:06:35] 2026-03-12 07:05:37,676 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 08:06:35] 2026-03-12 07:05:37,676 | INFO     | **************************************
[2026-03-12 08:06:35] 2026-03-12 07:05:37,677 | INFO     | 
[2026-03-12 08:06:35] 2026-03-12 07:05:37,677 | INFO     | pilot is running in a VM
[2026-03-12 08:06:35] 2026-03-12 07:05:37,677 | INFO     | architecture information:
[2026-03-12 08:06:35] 2026-03-12 07:05:37,678 | INFO     | executing command: cat /etc/os-release
[2026-03-12 08:06:35] 2026-03-12 07:05:37,921 | INFO     | cat /etc/os-release:
[2026-03-12 08:06:35] NAME="CentOS Linux"
[2026-03-12 08:06:35] VERSION="7 (Core)"
[2026-03-12 08:06:35] ID="centos"
[2026-03-12 08:06:35] ID_LIKE="rhel fedora"
[2026-03-12 08:06:35] VERSION_ID="7"
[2026-03-12 08:06:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 08:06:35] ANSI_COLOR="0;31"
[2026-03-12 08:06:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 08:06:35] HOME_URL="https://www.centos.org/"
[2026-03-12 08:06:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 08:06:35] 
[2026-03-12 08:06:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 08:06:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 08:06:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 08:06:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 08:06:35] 
[2026-03-12 08:06:35] 2026-03-12 07:05:37,922 | INFO     | **************************************
[2026-03-12 08:06:35] 2026-03-12 07:05:38,424 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-03-12 08:06:35] 2026-03-12 07:05:38,613 | INFO     | sufficient remaining disk space (495582183424 B)
[2026-03-12 08:06:35] 2026-03-12 07:05:38,614 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 08:06:35] 2026-03-12 07:05:38,614 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 08:06:35] 2026-03-12 07:05:38,614 | INFO     | update_server=False
[2026-03-12 08:06:35] 2026-03-12 07:05:38,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 08:06:35] 2026-03-12 07:05:38,680 | INFO     | all job control threads have been joined
[2026-03-12 08:06:35] 2026-03-12 07:05:39,182 | INFO     | all data control threads have been joined
[2026-03-12 08:06:35] 2026-03-12 07:05:39,275 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 08:06:35] 2026-03-12 07:05:39,275 | INFO     | aborting loop
[2026-03-12 08:06:35] 2026-03-12 07:05:39,442 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 08:06:35] 2026-03-12 07:05:39,620 | INFO     | [job] retrieve thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:39,637 | INFO     | all payload control threads have been joined
[2026-03-12 08:06:35] 2026-03-12 07:05:39,686 | INFO     | [job] control thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:39,732 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:39,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 08:06:35] 2026-03-12 07:05:39,895 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:39,911 | INFO     | [job] validate thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:40,188 | INFO     | [data] control thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:40,281 | INFO     | [job] job monitor thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:40,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 08:06:35] 2026-03-12 07:05:40,633 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:40,643 | INFO     | [payload] control thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:40,649 | INFO     | [payload] validate_post thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:40,669 | INFO     | [payload] failed_post thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:40,718 | INFO     | [data] copytool_in thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:40,856 | INFO     | [job] queue monitor thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:40,965 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:41,449 | INFO     | [data] copytool_out thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:05:44,532 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 08:06:35] 2026-03-12 07:06:07,487 | INFO     | PID=8909 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-12 08:06:35] 2026-03-12 07:06:07,487 | INFO     | .. there are 9 such processes running
[2026-03-12 08:06:35] 2026-03-12 07:06:07,487 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 08:06:35] 2026-03-12 07:06:07,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 08:06:35] 2026-03-12 07:06:07,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 08:06:35] 2026-03-12 07:06:24,651 | INFO     | [monitor] cgroup control has ended
[2026-03-12 08:06:35] 2026-03-12 07:06:24,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140572910487360)>', '<ExcThread(monitor, started 140572325046016)>']
[2026-03-12 08:06:35] 2026-03-12 07:06:25,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 08:06:35] 2026-03-12 07:06:25,593 | INFO     | [monitor] control thread has ended
[2026-03-12 08:06:35] 2026-03-12 07:06:29,879 | INFO     | all workflow threads have been joined
[2026-03-12 08:06:35] 2026-03-12 07:06:29,879 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 08:06:35] 2026-03-12 07:06:29,879 | INFO     | traces error code: 0
[2026-03-12 08:06:35] 2026-03-12 07:06:29,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 08:06:35] 2026-03-12 07:06:30,270 [wrapper] ==== pilot stdout END ====
[2026-03-12 08:06:35] 2026-03-12 07:06:30,367 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 08:06:35] 2026-03-12 07:06:30,467 [wrapper] pilotpid: 8909
[2026-03-12 08:06:35] 2026-03-12 07:06:30,556 [wrapper] Pilot exit status: 0
[2026-03-12 08:06:35] 2026-03-12 07:06:31,042 [wrapper] pandaids: 7049824079
[2026-03-12 08:06:35] 2026-03-12 07:06:32,148 [wrapper] cleanup supervisor_pilot 22393 8910
[2026-03-12 08:06:35] 2026-03-12 07:06:32,236 [wrapper] Test setup, not cleaning
[2026-03-12 08:06:35] 2026-03-12 07:06:32,300 [wrapper] apfmon messages muted
[2026-03-12 08:06:35] 2026-03-12 07:06:32,383 [wrapper] ==== wrapper stdout END ====
[2026-03-12 08:06:35] 2026-03-12 07:06:32,489 [wrapper] ==== wrapper stderr END ====
[2026-03-12 08:06:35]  *** Error codes and diagnostics ***
[2026-03-12 08:06:35]     "exeErrorCode": 0,
[2026-03-12 08:06:35]     "exeErrorDiag": "",
[2026-03-12 08:06:35]     "pilotErrorCode": 0,
[2026-03-12 08:06:35]     "pilotErrorDiag": "",
[2026-03-12 08:06:35]  *** Listing of results directory ***
[2026-03-12 08:06:35] total 418688
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc    585013 Mar 11 13:15 pilot3.tar.gz
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc      5111 Mar 11 13:16 queuedata.json
[2026-03-12 08:06:35] -rwx------. 1 boinc boinc     36322 Mar 11 13:17 runpilot2-wrapper.sh
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc       100 Mar 12 03:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 08:06:35] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 03:08 run_atlas
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc       105 Mar 12 03:08 job.xml
[2026-03-12 08:06:35] -rw-r--r--. 2 boinc boinc 216387055 Mar 12 03:08 EVNT.48967008._000498.pool.root.1
[2026-03-12 08:06:35] -rw-r--r--. 2 boinc boinc     15845 Mar 12 03:08 start_atlas.sh
[2026-03-12 08:06:35] drwxrwx--x. 2 boinc boinc        68 Mar 12 03:08 shared
[2026-03-12 08:06:35] -rw-r--r--. 2 boinc boinc    597517 Mar 12 03:08 input.tar.gz
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc      6390 Mar 12 03:08 init_data.xml
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc         0 Mar 12 03:08 boinc_lockfile
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc      2560 Mar 12 03:08 pandaJob.out
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc       415 Mar 12 03:13 workernode_map.json
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc   1006235 Mar 12 03:13 agis_schedconf.cvmfs.json
[2026-03-12 08:06:35] drwx------. 5 boinc boinc      4096 Mar 12 03:13 pilot3
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc 202597820 Mar 12 08:04 HITS.48967011._012571.pool.root.1
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc       531 Mar 12 08:04 boinc_task_state.xml
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc        95 Mar 12 08:05 pilot_heartbeat.json
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc      1013 Mar 12 08:05 memory_monitor_summary.json
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc   1511578 Mar 12 08:05 agis_ddmendpoints.agis.ALL.json
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc    487878 Mar 12 08:05 log.48967011._012571.job.log.tgz.1
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc      6313 Mar 12 08:05 heartbeat.json
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc      8192 Mar 12 08:06 boinc_mmap_file
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc        28 Mar 12 08:06 wrapper_checkpoint.txt
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc      4879 Mar 12 08:06 pilotlog.txt
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc   2426875 Mar 12 08:06 log.48967011._012571.job.log.1
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc       357 Mar 12 08:06 output.list
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc       620 Mar 12 08:06 runtime_log
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc   2928640 Mar 12 08:06 result.tar.gz
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc      8816 Mar 12 08:06 runtime_log.err
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc       656 Mar 12 08:06 4xqKDmBgXK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm0fjLDmEEdZgn.diag
[2026-03-12 08:06:35] -rw-r--r--. 1 boinc boinc     20792 Mar 12 08:06 stderr.txt
[2026-03-12 08:06:35] HITS file was successfully produced:
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc 202597820 Mar 12 08:04 shared/HITS.pool.root.1
[2026-03-12 08:06:35]  *** Contents of shared directory: ***
[2026-03-12 08:06:35] total 412628
[2026-03-12 08:06:35] -rw-r--r--. 2 boinc boinc 216387055 Mar 12 03:08 ATLAS.root_0
[2026-03-12 08:06:35] -rw-r--r--. 2 boinc boinc     15845 Mar 12 03:08 start_atlas.sh
[2026-03-12 08:06:35] -rw-r--r--. 2 boinc boinc    597517 Mar 12 03:08 input.tar.gz
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc 202597820 Mar 12 08:04 HITS.pool.root.1
[2026-03-12 08:06:35] -rw-------. 1 boinc boinc   2928640 Mar 12 08:06 result.tar.gz
08:06:36 (4827): run_atlas exited; CPU time 67800.625120
08:06:36 (4827): called boinc_finish(0)

</stderr_txt>
]]>

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