Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:29:39 (373155): wrapper (7.7.26015): starting
05:29:39 (373155): wrapper: running run_atlas (--nthreads 2)
[2026-03-12 05:29:39] Arguments: --nthreads 2
[2026-03-12 05:29:39] Threads: 2
[2026-03-12 05:29:39] Checking for CVMFS
[2026-03-12 05:29:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 05:29:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 05:29:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 05:29:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 05:29:39] 2.9.2.0 2856 3666 57448 157183 1 49 27681457 36864001 0 130560 0 1095059 99.975 141547 15146 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 05:29:39] CVMFS is ok
[2026-03-12 05:29:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 05:29:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 05:29:39] Further information can be found at the LHC@home message board.
[2026-03-12 05:29:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 05:29:39] Checking for apptainer binary...
[2026-03-12 05:29:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 05:29:39] Running /usr/bin/apptainer --version
[2026-03-12 05:29:39] apptainer version 1.4.1-1.1
[2026-03-12 05:29:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 05:29:39] thA337
[2026-03-12 05:29:39] apptainer works
[2026-03-12 05:29:39] Set ATHENA_PROC_NUMBER=2
[2026-03-12 05:29:39] Set ATHENA_CORE_NUMBER=2
[2026-03-12 05:29:39] Starting ATLAS job with PandaID=7050384630
[2026-03-12 05:29:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 07:57:26]  *** The last 200 lines of the pilot log: ***
[2026-03-12 07:57:26] 2026-03-12 06:57:06,703 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 07:57:26] 2026-03-12 06:57:06,703 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 07:57:26] 2026-03-12 06:57:06,704 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 07:57:26] 2026-03-12 06:57:06,704 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 07:57:26] 2026-03-12 06:57:06,704 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 07:57:26] 2026-03-12 06:57:06,704 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 07:57:26] 2026-03-12 06:57:06,704 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 07:57:26] 2026-03-12 06:57:06,705 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 07:57:26] 2026-03-12 06:57:06,705 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 07:57:26] 2026-03-12 06:57:06,705 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 07:57:26] 2026-03-12 06:57:06,705 | INFO     | job 7050384630 has completed (purged errors)
[2026-03-12 07:57:26] 2026-03-12 06:57:06,705 | INFO     | overall cleanup function is called
[2026-03-12 07:57:26] 2026-03-12 06:57:07,714 | INFO     | --- collectZombieJob: --- 10, [381586]
[2026-03-12 07:57:26] 2026-03-12 06:57:07,714 | INFO     | zombie collector waiting for pid 381586
[2026-03-12 07:57:26] 2026-03-12 06:57:07,715 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 07:57:26] 2026-03-12 06:57:07,715 | INFO     | collected zombie processes
[2026-03-12 07:57:26] 2026-03-12 06:57:07,715 | INFO     | will attempt to kill all subprocesses of pid=381586
[2026-03-12 07:57:26] 2026-03-12 06:57:07,746 | INFO     | process IDs to be killed: [381586] (in reverse order)
[2026-03-12 07:57:26] 2026-03-12 06:57:07,767 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 07:57:26] 2026-03-12 06:57:07,767 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 07:57:26] 2026-03-12 06:57:07,768 | INFO     | did not find any defunct processes belonging to 381586
[2026-03-12 07:57:26] 2026-03-12 06:57:07,768 | INFO     | did not find any defunct processes belonging to 381586
[2026-03-12 07:57:26] 2026-03-12 06:57:07,769 | INFO     | ready for new job
[2026-03-12 07:57:26] 2026-03-12 06:57:07,769 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 07:57:26] 2026-03-12 06:57:07,769 | INFO     | **************************************
[2026-03-12 07:57:26] 2026-03-12 06:57:07,769 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 07:57:26] 2026-03-12 06:57:07,769 | INFO     | **************************************
[2026-03-12 07:57:26] 2026-03-12 06:57:07,769 | INFO     | 
[2026-03-12 07:57:26] 2026-03-12 06:57:07,769 | INFO     | architecture information:
[2026-03-12 07:57:26] 2026-03-12 06:57:07,770 | INFO     | executing command: cat /etc/os-release
[2026-03-12 07:57:26] 2026-03-12 06:57:07,778 | INFO     | cat /etc/os-release:
[2026-03-12 07:57:26] NAME="CentOS Linux"
[2026-03-12 07:57:26] VERSION="7 (Core)"
[2026-03-12 07:57:26] ID="centos"
[2026-03-12 07:57:26] ID_LIKE="rhel fedora"
[2026-03-12 07:57:26] VERSION_ID="7"
[2026-03-12 07:57:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 07:57:26] ANSI_COLOR="0;31"
[2026-03-12 07:57:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 07:57:26] HOME_URL="https://www.centos.org/"
[2026-03-12 07:57:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 07:57:26] 
[2026-03-12 07:57:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 07:57:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 07:57:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 07:57:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 07:57:26] 
[2026-03-12 07:57:26] 2026-03-12 06:57:07,779 | INFO     | **************************************
[2026-03-12 07:57:26] 2026-03-12 06:57:08,282 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 07:57:26] 2026-03-12 06:57:08,294 | INFO     | sufficient remaining disk space (483250929664 B)
[2026-03-12 07:57:26] 2026-03-12 06:57:08,294 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 07:57:26] 2026-03-12 06:57:08,294 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 07:57:26] 2026-03-12 06:57:08,294 | INFO     | update_server=False
[2026-03-12 07:57:26] 2026-03-12 06:57:08,294 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 07:57:26] 2026-03-12 06:57:08,294 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-12 07:57:26] 2026-03-12 06:57:08,294 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 07:57:26] 2026-03-12 06:57:08,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 07:57:26] 2026-03-12 06:57:08,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 07:57:26] 2026-03-12 06:57:08,294 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 07:57:26] 2026-03-12 06:57:08,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 07:57:26] 2026-03-12 06:57:08,533 | INFO     | all job control threads have been joined
[2026-03-12 07:57:26] 2026-03-12 06:57:08,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 07:57:26] 2026-03-12 06:57:08,651 | INFO     | aborting loop
[2026-03-12 07:57:26] 2026-03-12 06:57:09,059 | INFO     | all payload control threads have been joined
[2026-03-12 07:57:26] 2026-03-12 06:57:09,300 | INFO     | [job] retrieve thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:09,301 | INFO     | [job] queue monitor thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:09,345 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:09,373 | INFO     | all data control threads have been joined
[2026-03-12 07:57:26] 2026-03-12 06:57:09,394 | INFO     | [data] copytool_in thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:09,534 | INFO     | [job] control thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:09,597 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:09,598 | INFO     | [payload] failed_post thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:09,657 | INFO     | [job] job monitor thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:10,065 | INFO     | [payload] control thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:10,111 | INFO     | [payload] validate_post thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:10,301 | INFO     | [data] copytool_out thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:10,358 | INFO     | [job] validate thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:10,378 | INFO     | [data] control thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:10,627 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 07:57:26] 2026-03-12 06:57:10,715 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:12,920 | INFO     | [monitor] cgroup control has ended
[2026-03-12 07:57:26] 2026-03-12 06:57:14,634 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:18,359 | INFO     | job.realtimelogging is not enabled
[2026-03-12 07:57:26] 2026-03-12 06:57:19,365 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 07:57:26] 2026-03-12 06:57:20,701 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140172951336768)>', '<ExcThread(monitor, started 140172087781120)>']
[2026-03-12 07:57:26] 2026-03-12 06:57:21,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 07:57:26] 2026-03-12 06:57:21,364 | INFO     | [monitor] control thread has ended
[2026-03-12 07:57:26] 2026-03-12 06:57:25,727 | INFO     | all workflow threads have been joined
[2026-03-12 07:57:26] 2026-03-12 06:57:25,924 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 07:57:26] 2026-03-12 06:57:25,924 | INFO     | traces error code: 0
[2026-03-12 07:57:26] 2026-03-12 06:57:25,925 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 07:57:26] 2026-03-12 06:57:25,966 [wrapper] ==== pilot stdout END ====
[2026-03-12 07:57:26] 2026-03-12 06:57:25,969 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 07:57:26] 2026-03-12 06:57:25,971 [wrapper] pilotpid: 377178
[2026-03-12 07:57:26] 2026-03-12 06:57:25,974 [wrapper] Pilot exit status: 0
[2026-03-12 07:57:26] 2026-03-12 06:57:25,980 [wrapper] pandaids: 7050384630
[2026-03-12 07:57:26] 2026-03-12 06:57:25,992 [wrapper] cleanup supervisor_pilot  386746 377179
[2026-03-12 07:57:26] 2026-03-12 06:57:25,994 [wrapper] Test setup, not cleaning
[2026-03-12 07:57:26] 2026-03-12 06:57:25,996 [wrapper] apfmon messages muted
[2026-03-12 07:57:26] 2026-03-12 06:57:25,998 [wrapper] ==== wrapper stdout END ====
[2026-03-12 07:57:26] 2026-03-12 06:57:26,000 [wrapper] ==== wrapper stderr END ====
[2026-03-12 07:57:26]  *** Error codes and diagnostics ***
[2026-03-12 07:57:26]     "exeErrorCode": 0,
[2026-03-12 07:57:26]     "exeErrorDiag": "",
[2026-03-12 07:57:26]     "pilotErrorCode": 0,
[2026-03-12 07:57:26]     "pilotErrorDiag": "",
[2026-03-12 07:57:26]  *** Listing of results directory ***
[2026-03-12 07:57:26] total 509252
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc    602624 Mar 10 17:47 pilot3.tar.gz
[2026-03-12 07:57:26] -rwx------ 1 boinc boinc     36322 Mar 11 13:16 runpilot2-wrapper.sh
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc      5111 Mar 11 13:16 queuedata.json
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc       100 Mar 12 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 07:57:26] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 05:29 run_atlas
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc       105 Mar 12 05:29 job.xml
[2026-03-12 07:57:26] -rw-r--r-- 2 boinc boinc 287845204 Mar 12 05:29 EVNT.48220205._000160.pool.root.1
[2026-03-12 07:57:26] -rw-r--r-- 2 boinc boinc    616314 Mar 12 05:29 input.tar.gz
[2026-03-12 07:57:26] -rw-r--r-- 2 boinc boinc     15845 Mar 12 05:29 start_atlas.sh
[2026-03-12 07:57:26] drwxrwx--x 2 boinc boinc      4096 Mar 12 05:29 shared
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc         0 Mar 12 05:29 boinc_setup_complete
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc      6205 Mar 12 05:29 init_data.xml
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc         0 Mar 12 05:29 boinc_lockfile
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc      2586 Mar 12 05:29 pandaJob.out
[2026-03-12 07:57:26] -rw------- 1 boinc boinc   1006235 Mar 12 05:29 agis_schedconf.cvmfs.json
[2026-03-12 07:57:26] -rw------- 1 boinc boinc   1511578 Mar 12 05:29 agis_ddmendpoints.agis.ALL.json
[2026-03-12 07:57:26] -rw------- 1 boinc boinc       426 Mar 12 05:30 workernode_map.json
[2026-03-12 07:57:26] drwx------ 7 boinc boinc      4096 Mar 12 05:30 pilot3
[2026-03-12 07:57:26] -rw------- 1 boinc boinc        95 Mar 12 07:56 pilot_heartbeat.json
[2026-03-12 07:57:26] -rw------- 1 boinc boinc 226585854 Mar 12 07:56 HITS.48838581._006624.pool.root.1
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc       529 Mar 12 07:56 boinc_task_state.xml
[2026-03-12 07:57:26] -rw------- 1 boinc boinc      1013 Mar 12 07:57 memory_monitor_summary.json
[2026-03-12 07:57:26] -rw------- 1 boinc boinc    283501 Mar 12 07:57 log.48838581._006624.job.log.tgz.1
[2026-03-12 07:57:26] -rw------- 1 boinc boinc      6302 Mar 12 07:57 heartbeat.json
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc      8192 Mar 12 07:57 boinc_mmap_file
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc        27 Mar 12 07:57 wrapper_checkpoint.txt
[2026-03-12 07:57:26] -rw------- 1 boinc boinc      4624 Mar 12 07:57 pilotlog.txt
[2026-03-12 07:57:26] -rw------- 1 boinc boinc   1260362 Mar 12 07:57 log.48838581._006624.job.log.1
[2026-03-12 07:57:26] -rw------- 1 boinc boinc       357 Mar 12 07:57 output.list
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc       620 Mar 12 07:57 runtime_log
[2026-03-12 07:57:26] -rw------- 1 boinc boinc   1556480 Mar 12 07:57 result.tar.gz
[2026-03-12 07:57:26] -rw------- 1 boinc boinc       657 Mar 12 07:57 gvRMDmhfXK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmkbjLDmDZbwTm.diag
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc      8896 Mar 12 07:57 runtime_log.err
[2026-03-12 07:57:26] -rw-r--r-- 1 boinc boinc     11829 Mar 12 07:57 stderr.txt
[2026-03-12 07:57:26] HITS file was successfully produced:
[2026-03-12 07:57:26] -rw------- 1 boinc boinc 226585854 Mar 12 07:56 shared/HITS.pool.root.1
[2026-03-12 07:57:26]  *** Contents of shared directory: ***
[2026-03-12 07:57:26] total 504520
[2026-03-12 07:57:26] -rw-r--r-- 2 boinc boinc 287845204 Mar 12 05:29 ATLAS.root_0
[2026-03-12 07:57:26] -rw-r--r-- 2 boinc boinc    616314 Mar 12 05:29 input.tar.gz
[2026-03-12 07:57:26] -rw-r--r-- 2 boinc boinc     15845 Mar 12 05:29 start_atlas.sh
[2026-03-12 07:57:26] -rw------- 1 boinc boinc 226585854 Mar 12 07:56 HITS.pool.root.1
[2026-03-12 07:57:26] -rw------- 1 boinc boinc   1556480 Mar 12 07:57 result.tar.gz
07:57:28 (373155): run_atlas exited; CPU time 17225.144844
07:57:28 (373155): called boinc_finish(0)

</stderr_txt>
]]>

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