Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:37:46 (2389300): wrapper (7.7.26015): starting
03:37:46 (2389300): wrapper: running run_atlas (--nthreads 3)
[2026-03-12 03:37:46] Arguments: --nthreads 3
[2026-03-12 03:37:46] Threads: 3
[2026-03-12 03:37:46] Checking for CVMFS
[2026-03-12 03:37:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 03:37:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 03:37:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 03:37:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 03:37:46] 2.9.2.0 986355 9571 85636 157179 2 49 18701201 36864000 0 130560 0 3894130 99.983 359512 11462 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 03:37:46] CVMFS is ok
[2026-03-12 03:37:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 03:37:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 03:37:46] Further information can be found at the LHC@home message board.
[2026-03-12 03:37:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 03:37:46] Checking for apptainer binary...
[2026-03-12 03:37:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 03:37:46] Running /usr/bin/apptainer --version
[2026-03-12 03:37:46] apptainer version 1.4.1-1.1
[2026-03-12 03:37:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 03:37:46] atlasA223
[2026-03-12 03:37:46] apptainer works
[2026-03-12 03:37:46] Set ATHENA_PROC_NUMBER=3
[2026-03-12 03:37:46] Set ATHENA_CORE_NUMBER=3
[2026-03-12 03:37:46] Starting ATLAS job with PandaID=7036240257
[2026-03-12 03:37:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 05:38:11]  *** The last 200 lines of the pilot log: ***
[2026-03-12 05:38:11] 2026-03-12 04:37:31,039 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 05:38:11] 2026-03-12 04:37:31,039 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 05:38:11] 2026-03-12 04:37:31,039 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 05:38:11] 2026-03-12 04:37:31,039 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 05:38:11] 2026-03-12 04:37:31,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 05:38:11] 2026-03-12 04:37:31,039 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 05:38:11] 2026-03-12 04:37:31,039 | INFO     | job 7036240257 has completed (purged errors)
[2026-03-12 05:38:11] 2026-03-12 04:37:31,039 | INFO     | overall cleanup function is called
[2026-03-12 05:38:11] 2026-03-12 04:37:32,040 | INFO     | --- collectZombieJob: --- 10, [2397791]
[2026-03-12 05:38:11] 2026-03-12 04:37:32,041 | INFO     | zombie collector waiting for pid 2397791
[2026-03-12 05:38:11] 2026-03-12 04:37:32,041 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 05:38:11] 2026-03-12 04:37:32,041 | INFO     | collected zombie processes
[2026-03-12 05:38:11] 2026-03-12 04:37:32,041 | INFO     | will attempt to kill all subprocesses of pid=2397791
[2026-03-12 05:38:11] 2026-03-12 04:37:32,090 | INFO     | process IDs to be killed: [2397791] (in reverse order)
[2026-03-12 05:38:11] 2026-03-12 04:37:32,116 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 05:38:11] 2026-03-12 04:37:32,116 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 05:38:11] 2026-03-12 04:37:32,118 | INFO     | did not find any defunct processes belonging to 2397791
[2026-03-12 05:38:11] 2026-03-12 04:37:32,119 | INFO     | did not find any defunct processes belonging to 2397791
[2026-03-12 05:38:11] 2026-03-12 04:37:32,119 | INFO     | ready for new job
[2026-03-12 05:38:11] 2026-03-12 04:37:32,119 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 05:38:11] 2026-03-12 04:37:32,120 | INFO     | **************************************
[2026-03-12 05:38:11] 2026-03-12 04:37:32,120 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 05:38:11] 2026-03-12 04:37:32,120 | INFO     | **************************************
[2026-03-12 05:38:11] 2026-03-12 04:37:32,120 | INFO     | 
[2026-03-12 05:38:11] 2026-03-12 04:37:32,120 | INFO     | architecture information:
[2026-03-12 05:38:11] 2026-03-12 04:37:32,121 | INFO     | executing command: cat /etc/os-release
[2026-03-12 05:38:11] 2026-03-12 04:37:32,129 | INFO     | cat /etc/os-release:
[2026-03-12 05:38:11] NAME="CentOS Linux"
[2026-03-12 05:38:11] VERSION="7 (Core)"
[2026-03-12 05:38:11] ID="centos"
[2026-03-12 05:38:11] ID_LIKE="rhel fedora"
[2026-03-12 05:38:11] VERSION_ID="7"
[2026-03-12 05:38:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 05:38:11] ANSI_COLOR="0;31"
[2026-03-12 05:38:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 05:38:11] HOME_URL="https://www.centos.org/"
[2026-03-12 05:38:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 05:38:11] 
[2026-03-12 05:38:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 05:38:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 05:38:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 05:38:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 05:38:11] 
[2026-03-12 05:38:11] 2026-03-12 04:37:32,129 | INFO     | **************************************
[2026-03-12 05:38:11] 2026-03-12 04:37:32,633 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 05:38:11] 2026-03-12 04:37:32,645 | INFO     | sufficient remaining disk space (385891696640 B)
[2026-03-12 05:38:11] 2026-03-12 04:37:32,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 05:38:11] 2026-03-12 04:37:32,646 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 05:38:11] 2026-03-12 04:37:32,646 | INFO     | update_server=False
[2026-03-12 05:38:11] 2026-03-12 04:37:32,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 05:38:11] 2026-03-12 04:37:32,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 05:38:11] 2026-03-12 04:37:32,646 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 05:38:11] 2026-03-12 04:37:32,855 | INFO     | all data control threads have been joined
[2026-03-12 05:38:11] 2026-03-12 04:37:32,905 | INFO     | all job control threads have been joined
[2026-03-12 05:38:11] 2026-03-12 04:37:33,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 05:38:11] 2026-03-12 04:37:33,163 | INFO     | aborting loop
[2026-03-12 05:38:11] 2026-03-12 04:37:33,248 | INFO     | all payload control threads have been joined
[2026-03-12 05:38:11] 2026-03-12 04:37:33,554 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 05:38:11] 2026-03-12 04:37:33,651 | INFO     | [job] queue monitor thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:33,652 | INFO     | [job] retrieve thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:33,861 | INFO     | [data] control thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:33,911 | INFO     | [job] control thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:34,166 | INFO     | [job] job monitor thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:34,207 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:34,253 | INFO     | [payload] control thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:34,382 | INFO     | [job] validate thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:34,436 | INFO     | [payload] validate_post thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:34,464 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:34,468 | INFO     | [data] copytool_in thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:34,482 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:34,585 | INFO     | [payload] failed_post thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:35,560 | INFO     | [data] copytool_out thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:36,652 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:37,034 | INFO     | job.realtimelogging is not enabled
[2026-03-12 05:38:11] 2026-03-12 04:37:38,040 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 05:38:11] 2026-03-12 04:37:52,207 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-03-12 05:38:11] 2026-03-12 04:38:03,715 | INFO     | PID=2393356 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 05:38:11] 2026-03-12 04:38:03,715 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 05:38:11] 2026-03-12 04:38:03,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 05:38:11] 2026-03-12 04:38:03,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 05:38:11] 2026-03-12 04:38:04,151 | INFO     | [monitor] cgroup control has ended
[2026-03-12 05:38:11] 2026-03-12 04:38:06,070 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139636853454656)>', '<ExcThread(monitor, started 139636579256064)>']
[2026-03-12 05:38:11] 2026-03-12 04:38:06,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 05:38:11] 2026-03-12 04:38:06,730 | INFO     | [monitor] control thread has ended
[2026-03-12 05:38:11] 2026-03-12 04:38:11,096 | INFO     | all workflow threads have been joined
[2026-03-12 05:38:11] 2026-03-12 04:38:11,096 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 05:38:11] 2026-03-12 04:38:11,097 | INFO     | traces error code: 0
[2026-03-12 05:38:11] 2026-03-12 04:38:11,097 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 05:38:11] 2026-03-12 04:38:11,147 [wrapper] ==== pilot stdout END ====
[2026-03-12 05:38:11] 2026-03-12 04:38:11,149 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 05:38:11] 2026-03-12 04:38:11,152 [wrapper] pilotpid: 2393356
[2026-03-12 05:38:11] 2026-03-12 04:38:11,154 [wrapper] Pilot exit status: 0
[2026-03-12 05:38:11] 2026-03-12 04:38:11,161 [wrapper] pandaids: 7036240257
[2026-03-12 05:38:11] 2026-03-12 04:38:11,179 [wrapper] cleanup supervisor_pilot 2403889 2393357
[2026-03-12 05:38:11] 2026-03-12 04:38:11,181 [wrapper] Test setup, not cleaning
[2026-03-12 05:38:11] 2026-03-12 04:38:11,184 [wrapper] apfmon messages muted
[2026-03-12 05:38:11] 2026-03-12 04:38:11,186 [wrapper] ==== wrapper stdout END ====
[2026-03-12 05:38:11] 2026-03-12 04:38:11,188 [wrapper] ==== wrapper stderr END ====
[2026-03-12 05:38:11]  *** Error codes and diagnostics ***
[2026-03-12 05:38:11]     "exeErrorCode": 0,
[2026-03-12 05:38:11]     "exeErrorDiag": "",
[2026-03-12 05:38:11]     "pilotErrorCode": 0,
[2026-03-12 05:38:11]     "pilotErrorDiag": "",
[2026-03-12 05:38:11]  *** Listing of results directory ***
[2026-03-12 05:38:11] total 426896
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc    584627 Mar  3 09:25 pilot3.tar.gz
[2026-03-12 05:38:11] -rwx------ 1 boinc boinc     36322 Mar  3 09:25 runpilot2-wrapper.sh
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc      5111 Mar  3 09:26 queuedata.json
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc       100 Mar 12 03:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 05:38:11] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 03:37 run_atlas
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc       105 Mar 12 03:37 job.xml
[2026-03-12 05:38:11] -rw-r--r-- 2 boinc boinc 234156998 Mar 12 03:37 EVNT.48462218._000003.pool.root.1
[2026-03-12 05:38:11] -rw-r--r-- 2 boinc boinc    597963 Mar 12 03:37 input.tar.gz
[2026-03-12 05:38:11] -rw-r--r-- 2 boinc boinc     15845 Mar 12 03:37 start_atlas.sh
[2026-03-12 05:38:11] drwxrwx--x 2 boinc boinc      4096 Mar 12 03:37 shared
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc         0 Mar 12 03:37 boinc_setup_complete
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc      6446 Mar 12 03:37 init_data.xml
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc         0 Mar 12 03:37 boinc_lockfile
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc      2626 Mar 12 03:37 pandaJob.out
[2026-03-12 05:38:11] -rw------- 1 boinc boinc   1006235 Mar 12 03:37 agis_schedconf.cvmfs.json
[2026-03-12 05:38:11] -rw------- 1 boinc boinc   1511578 Mar 12 03:37 agis_ddmendpoints.agis.ALL.json
[2026-03-12 05:38:11] -rw------- 1 boinc boinc       425 Mar 12 03:37 workernode_map.json
[2026-03-12 05:38:11] drwx------ 5 boinc boinc      4096 Mar 12 03:37 pilot3
[2026-03-12 05:38:11] -rw------- 1 boinc boinc 196424071 Mar 12 05:37 HITS.48852301._000065.pool.root.1
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc       529 Mar 12 05:37 boinc_task_state.xml
[2026-03-12 05:38:11] -rw------- 1 boinc boinc      1018 Mar 12 05:37 memory_monitor_summary.json
[2026-03-12 05:38:11] -rw------- 1 boinc boinc    287116 Mar 12 05:37 log.48852301._000065.job.log.tgz.1
[2026-03-12 05:38:11] -rw------- 1 boinc boinc      6294 Mar 12 05:37 heartbeat.json
[2026-03-12 05:38:11] -rw------- 1 boinc boinc        95 Mar 12 05:37 pilot_heartbeat.json
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc      8192 Mar 12 05:38 boinc_mmap_file
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc        27 Mar 12 05:38 wrapper_checkpoint.txt
[2026-03-12 05:38:11] -rw------- 1 boinc boinc      4820 Mar 12 05:38 pilotlog.txt
[2026-03-12 05:38:11] -rw------- 1 boinc boinc   1031476 Mar 12 05:38 log.48852301._000065.job.log.1
[2026-03-12 05:38:11] -rw------- 1 boinc boinc       357 Mar 12 05:38 output.list
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc       620 Mar 12 05:38 runtime_log
[2026-03-12 05:38:11] -rw------- 1 boinc boinc   1331200 Mar 12 05:38 result.tar.gz
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc      8911 Mar 12 05:38 runtime_log.err
[2026-03-12 05:38:11] -rw------- 1 boinc boinc       660 Mar 12 05:38 lUGODmlFaH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmUwDLDmSpIQQm.diag
[2026-03-12 05:38:11] -rw-r--r-- 1 boinc boinc     11611 Mar 12 05:38 stderr.txt
[2026-03-12 05:38:11] HITS file was successfully produced:
[2026-03-12 05:38:11] -rw------- 1 boinc boinc 196424071 Mar 12 05:37 shared/HITS.pool.root.1
[2026-03-12 05:38:11]  *** Contents of shared directory: ***
[2026-03-12 05:38:11] total 422404
[2026-03-12 05:38:11] -rw-r--r-- 2 boinc boinc 234156998 Mar 12 03:37 ATLAS.root_0
[2026-03-12 05:38:11] -rw-r--r-- 2 boinc boinc    597963 Mar 12 03:37 input.tar.gz
[2026-03-12 05:38:11] -rw-r--r-- 2 boinc boinc     15845 Mar 12 03:37 start_atlas.sh
[2026-03-12 05:38:11] -rw------- 1 boinc boinc 196424071 Mar 12 05:37 HITS.pool.root.1
[2026-03-12 05:38:11] -rw------- 1 boinc boinc   1331200 Mar 12 05:38 result.tar.gz
05:38:12 (2389300): run_atlas exited; CPU time 20797.044969
05:38:12 (2389300): called boinc_finish(0)

</stderr_txt>
]]>

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