Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:46:04 (2003708): wrapper (7.7.26015): starting
23:46:04 (2003708): wrapper: running run_atlas (--nthreads 2)
[2026-03-11 23:46:04] Arguments: --nthreads 2
[2026-03-11 23:46:04] Threads: 2
[2026-03-11 23:46:04] Checking for CVMFS
[2026-03-11 23:46:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 23:46:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 23:46:04] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 23:46:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 23:46:04] 2.9.2.0 22417 20598 62108 157173 0 50 27606404 36864001 0 130560 0 5771498 99.976 764776 12158 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-11 23:46:04] CVMFS is ok
[2026-03-11 23:46:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 23:46:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 23:46:04] Further information can be found at the LHC@home message board.
[2026-03-11 23:46:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 23:46:04] Checking for apptainer binary...
[2026-03-11 23:46:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 23:46:04] Running /usr/bin/apptainer --version
[2026-03-11 23:46:04] apptainer version 1.4.1-1.1
[2026-03-11 23:46:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 23:46:04] thA314b
[2026-03-11 23:46:04] apptainer works
[2026-03-11 23:46:04] Set ATHENA_PROC_NUMBER=2
[2026-03-11 23:46:04] Set ATHENA_CORE_NUMBER=2
[2026-03-11 23:46:04] Starting ATLAS job with PandaID=7036222620
[2026-03-11 23:46:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 02:06:43]  *** The last 200 lines of the pilot log: ***
[2026-03-12 02:06:43] 2026-03-12 01:05:44,568 | INFO     | job 7036222620 has completed (purged errors)
[2026-03-12 02:06:43] 2026-03-12 01:05:44,568 | INFO     | overall cleanup function is called
[2026-03-12 02:06:43] 2026-03-12 01:05:45,573 | INFO     | --- collectZombieJob: --- 10, [2012145]
[2026-03-12 02:06:43] 2026-03-12 01:05:45,573 | INFO     | zombie collector waiting for pid 2012145
[2026-03-12 02:06:43] 2026-03-12 01:05:45,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 02:06:43] 2026-03-12 01:05:45,573 | INFO     | collected zombie processes
[2026-03-12 02:06:43] 2026-03-12 01:05:45,573 | INFO     | will attempt to kill all subprocesses of pid=2012145
[2026-03-12 02:06:43] 2026-03-12 01:05:45,599 | INFO     | process IDs to be killed: [2012145] (in reverse order)
[2026-03-12 02:06:43] 2026-03-12 01:05:45,621 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 02:06:43] 2026-03-12 01:05:45,621 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 02:06:43] 2026-03-12 01:05:45,622 | INFO     | did not find any defunct processes belonging to 2012145
[2026-03-12 02:06:43] 2026-03-12 01:05:45,622 | INFO     | did not find any defunct processes belonging to 2012145
[2026-03-12 02:06:43] 2026-03-12 01:05:45,623 | INFO     | ready for new job
[2026-03-12 02:06:43] 2026-03-12 01:05:45,623 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 02:06:43] 2026-03-12 01:05:45,623 | INFO     | **************************************
[2026-03-12 02:06:43] 2026-03-12 01:05:45,623 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 02:06:43] 2026-03-12 01:05:45,623 | INFO     | **************************************
[2026-03-12 02:06:43] 2026-03-12 01:05:45,623 | INFO     | 
[2026-03-12 02:06:43] 2026-03-12 01:05:45,623 | INFO     | architecture information:
[2026-03-12 02:06:43] 2026-03-12 01:05:45,624 | INFO     | executing command: cat /etc/os-release
[2026-03-12 02:06:43] 2026-03-12 01:05:45,632 | INFO     | cat /etc/os-release:
[2026-03-12 02:06:43] NAME="CentOS Linux"
[2026-03-12 02:06:43] VERSION="7 (Core)"
[2026-03-12 02:06:43] ID="centos"
[2026-03-12 02:06:43] ID_LIKE="rhel fedora"
[2026-03-12 02:06:43] VERSION_ID="7"
[2026-03-12 02:06:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 02:06:43] ANSI_COLOR="0;31"
[2026-03-12 02:06:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 02:06:43] HOME_URL="https://www.centos.org/"
[2026-03-12 02:06:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 02:06:43] 
[2026-03-12 02:06:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 02:06:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 02:06:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 02:06:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 02:06:43] 
[2026-03-12 02:06:43] 2026-03-12 01:05:45,632 | INFO     | **************************************
[2026-03-12 02:06:43] 2026-03-12 01:05:46,135 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 02:06:43] 2026-03-12 01:05:46,148 | INFO     | sufficient remaining disk space (496249077760 B)
[2026-03-12 02:06:43] 2026-03-12 01:05:46,148 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 02:06:43] 2026-03-12 01:05:46,148 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 02:06:43] 2026-03-12 01:05:46,148 | INFO     | update_server=False
[2026-03-12 02:06:43] 2026-03-12 01:05:46,148 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 02:06:43] 2026-03-12 01:05:46,148 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 02:06:43] 2026-03-12 01:05:46,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 02:06:43] 2026-03-12 01:05:46,148 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 02:06:43] 2026-03-12 01:05:46,148 | INFO     | aborting loop
[2026-03-12 02:06:43] 2026-03-12 01:05:46,662 | INFO     | all payload control threads have been joined
[2026-03-12 02:06:43] 2026-03-12 01:05:47,093 | INFO     | all data control threads have been joined
[2026-03-12 02:06:43] 2026-03-12 01:05:47,149 | INFO     | [job] retrieve thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:47,153 | INFO     | [job] queue monitor thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:47,154 | INFO     | [job] job monitor thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:47,158 | INFO     | all job control threads have been joined
[2026-03-12 02:06:43] 2026-03-12 01:05:47,384 | INFO     | [payload] failed_post thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:47,572 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:47,668 | INFO     | [payload] control thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:47,782 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:47,783 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:47,854 | INFO     | [job] validate thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:47,982 | INFO     | [payload] validate_post thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:48,001 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:48,099 | INFO     | [data] control thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:48,116 | INFO     | [data] copytool_in thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:48,154 | INFO     | [data] copytool_out thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:48,164 | INFO     | [job] control thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:05:48,497 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 02:06:43] 2026-03-12 01:05:52,504 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 02:06:43] 2026-03-12 01:06:16,166 | INFO     | PID=2007734 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 02:06:43] 2026-03-12 01:06:16,166 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 02:06:43] 2026-03-12 01:06:16,166 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 02:06:43] 2026-03-12 01:06:16,166 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 02:06:43] 2026-03-12 01:06:37,358 | INFO     | [monitor] cgroup control has ended
[2026-03-12 02:06:43] 2026-03-12 01:06:37,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140489415919424)>', '<ExcThread(monitor, started 140488623507200)>']
[2026-03-12 02:06:43] 2026-03-12 01:06:38,284 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 02:06:43] 2026-03-12 01:06:38,284 | INFO     | [monitor] control thread has ended
[2026-03-12 02:06:43] 2026-03-12 01:06:42,898 | INFO     | all workflow threads have been joined
[2026-03-12 02:06:43] 2026-03-12 01:06:42,898 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 02:06:43] 2026-03-12 01:06:42,899 | INFO     | traces error code: 0
[2026-03-12 02:06:43] 2026-03-12 01:06:42,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 02:06:43] 2026-03-12 01:06:42,941 [wrapper] ==== pilot stdout END ====
[2026-03-12 02:06:43] 2026-03-12 01:06:42,943 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 02:06:43] 2026-03-12 01:06:42,946 [wrapper] pilotpid: 2007734
[2026-03-12 02:06:43] 2026-03-12 01:06:42,948 [wrapper] Pilot exit status: 0
[2026-03-12 02:06:43] 2026-03-12 01:06:42,954 [wrapper] pandaids: 7036222620
[2026-03-12 02:06:43] 2026-03-12 01:06:42,968 [wrapper] cleanup supervisor_pilot 2017836 2007735
[2026-03-12 02:06:43] 2026-03-12 01:06:42,971 [wrapper] Test setup, not cleaning
[2026-03-12 02:06:43] 2026-03-12 01:06:42,973 [wrapper] apfmon messages muted
[2026-03-12 02:06:43] 2026-03-12 01:06:42,975 [wrapper] ==== wrapper stdout END ====
[2026-03-12 02:06:43] 2026-03-12 01:06:42,977 [wrapper] ==== wrapper stderr END ====
[2026-03-12 02:06:43]  *** Error codes and diagnostics ***
[2026-03-12 02:06:43]     "exeErrorCode": 0,
[2026-03-12 02:06:43]     "exeErrorDiag": "",
[2026-03-12 02:06:43]     "pilotErrorCode": 0,
[2026-03-12 02:06:43]     "pilotErrorDiag": "",
[2026-03-12 02:06:43]  *** Listing of results directory ***
[2026-03-12 02:06:43] total 505612
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc    584627 Mar  3 08:05 pilot3.tar.gz
[2026-03-12 02:06:43] -rwx------ 1 boinc boinc     36322 Mar  3 08:06 runpilot2-wrapper.sh
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc      5111 Mar  3 08:06 queuedata.json
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc       100 Mar 11 23:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 02:06:43] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 23:46 run_atlas
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc       105 Mar 11 23:46 job.xml
[2026-03-12 02:06:43] -rw-r--r-- 2 boinc boinc 296898427 Mar 11 23:46 EVNT.48717157._000003.pool.root.1
[2026-03-12 02:06:43] -rw-r--r-- 2 boinc boinc    597951 Mar 11 23:46 input.tar.gz
[2026-03-12 02:06:43] -rw-r--r-- 2 boinc boinc     15845 Mar 11 23:46 start_atlas.sh
[2026-03-12 02:06:43] drwxrwx--x 2 boinc boinc      4096 Mar 11 23:46 shared
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc         0 Mar 11 23:46 boinc_setup_complete
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc      6206 Mar 11 23:46 init_data.xml
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc         0 Mar 11 23:46 boinc_lockfile
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc      2590 Mar 11 23:46 pandaJob.out
[2026-03-12 02:06:43] -rw------- 1 boinc boinc   1006243 Mar 11 23:46 agis_schedconf.cvmfs.json
[2026-03-12 02:06:43] -rw------- 1 boinc boinc   1511578 Mar 11 23:46 agis_ddmendpoints.agis.ALL.json
[2026-03-12 02:06:43] -rw------- 1 boinc boinc       420 Mar 11 23:46 workernode_map.json
[2026-03-12 02:06:43] drwx------ 5 boinc boinc      4096 Mar 11 23:46 pilot3
[2026-03-12 02:06:43] -rw------- 1 boinc boinc 213992868 Mar 12 02:05 HITS.48878057._000054.pool.root.1
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc       530 Mar 12 02:05 boinc_task_state.xml
[2026-03-12 02:06:43] -rw------- 1 boinc boinc      1012 Mar 12 02:05 memory_monitor_summary.json
[2026-03-12 02:06:43] -rw------- 1 boinc boinc    273152 Mar 12 02:05 log.48878057._000054.job.log.tgz.1
[2026-03-12 02:06:43] -rw------- 1 boinc boinc      6285 Mar 12 02:05 heartbeat.json
[2026-03-12 02:06:43] -rw------- 1 boinc boinc        95 Mar 12 02:06 pilot_heartbeat.json
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc      8192 Mar 12 02:06 boinc_mmap_file
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc        27 Mar 12 02:06 wrapper_checkpoint.txt
[2026-03-12 02:06:43] -rw------- 1 boinc boinc      4748 Mar 12 02:06 pilotlog.txt
[2026-03-12 02:06:43] -rw------- 1 boinc boinc   1195928 Mar 12 02:06 log.48878057._000054.job.log.1
[2026-03-12 02:06:43] -rw------- 1 boinc boinc       357 Mar 12 02:06 output.list
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc       620 Mar 12 02:06 runtime_log
[2026-03-12 02:06:43] -rw------- 1 boinc boinc   1484800 Mar 12 02:06 result.tar.gz
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc      8901 Mar 12 02:06 runtime_log.err
[2026-03-12 02:06:43] -rw------- 1 boinc boinc       658 Mar 12 02:06 HoNODm90YH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYzFLDmRAlM1m.diag
[2026-03-12 02:06:43] -rw-r--r-- 1 boinc boinc     10809 Mar 12 02:06 stderr.txt
[2026-03-12 02:06:43] HITS file was successfully produced:
[2026-03-12 02:06:43] -rw------- 1 boinc boinc 213992868 Mar 12 02:05 shared/HITS.pool.root.1
[2026-03-12 02:06:43]  *** Contents of shared directory: ***
[2026-03-12 02:06:43] total 500976
[2026-03-12 02:06:43] -rw-r--r-- 2 boinc boinc 296898427 Mar 11 23:46 ATLAS.root_0
[2026-03-12 02:06:43] -rw-r--r-- 2 boinc boinc    597951 Mar 11 23:46 input.tar.gz
[2026-03-12 02:06:43] -rw-r--r-- 2 boinc boinc     15845 Mar 11 23:46 start_atlas.sh
[2026-03-12 02:06:43] -rw------- 1 boinc boinc 213992868 Mar 12 02:05 HITS.pool.root.1
[2026-03-12 02:06:43] -rw------- 1 boinc boinc   1484800 Mar 12 02:06 result.tar.gz
02:06:44 (2003708): run_atlas exited; CPU time 16291.082027
02:06:44 (2003708): called boinc_finish(0)

</stderr_txt>
]]>

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