Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:04:25 (27027): wrapper (7.7.26015): starting
01:04:25 (27027): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 01:04:25] Arguments: --nthreads 8
[2026-03-12 01:04:25] Threads: 8
[2026-03-12 01:04:25] Checking for CVMFS
[2026-03-12 01:04:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 01:04:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 01:04:25] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 01:04:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 01:04:25] 2.11.2.0 26122 123950 136168 157176 2 295 20278043 25165825 761 130560 155 42275302 99.822 33964397 1116 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-12 01:04:25] CVMFS is ok
[2026-03-12 01:04:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 01:04:25] Checking for apptainer binary...
[2026-03-12 01:04:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 01:04:25] Running /usr/bin/apptainer --version
[2026-03-12 01:04:26] apptainer version 1.3.2-1.el7
[2026-03-12 01:04:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 01:04:27] cg-vwn399.simple-grid.lan
[2026-03-12 01:04:27] apptainer works
[2026-03-12 01:04:27] Set ATHENA_PROC_NUMBER=8
[2026-03-12 01:04:27] Set ATHENA_CORE_NUMBER=8
[2026-03-12 01:04:28] Starting ATLAS job with PandaID=7049740061
[2026-03-12 01:04:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 06:01:35]  *** The last 200 lines of the pilot log: ***
[2026-03-12 06:01:35] 2026-03-12 05:00:28,668 | INFO     | total number of processed events: 400 (read)
[2026-03-12 06:01:35] 2026-03-12 05:00:28,670 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-7049740061/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 06:01:35] 2026-03-12 05:00:28,671 | INFO     | extracted standard info from prmon json
[2026-03-12 06:01:35] 2026-03-12 05:00:28,671 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 06:01:35] 2026-03-12 05:00:28,671 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 06:01:35] 2026-03-12 05:00:28,671 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 06:01:35] 2026-03-12 05:00:28,671 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 06:01:35] 2026-03-12 05:00:28,678 | INFO     | fitting pss+swap vs Time
[2026-03-12 06:01:35] 2026-03-12 05:00:28,679 | INFO     | sum of square deviations: 7641036290.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,682 | INFO     | sum of deviations: 17006741745.000008
[2026-03-12 06:01:35] 2026-03-12 05:00:28,682 | INFO     | mean x: 1773282758.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,682 | INFO     | mean y: 2488871.079037801
[2026-03-12 06:01:35] 2026-03-12 05:00:28,682 | INFO     | intersect: -3944326817.4729853
[2026-03-12 06:01:35] 2026-03-12 05:00:28,683 | INFO     | chi2: 3.0622199647423765
[2026-03-12 06:01:35] 2026-03-12 05:00:28,683 | INFO     | sum of square deviations: 7253894147.5
[2026-03-12 06:01:35] 2026-03-12 05:00:28,689 | INFO     | sum of deviations: 55889307394.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,689 | INFO     | mean x: 1773282605.5
[2026-03-12 06:01:35] 2026-03-12 05:00:28,690 | INFO     | mean y: 2504025.888111888
[2026-03-12 06:01:35] 2026-03-12 05:00:28,690 | INFO     | intersect: -13660162483.986368
[2026-03-12 06:01:35] 2026-03-12 05:00:28,690 | INFO     | chi2: 1.438894786650224
[2026-03-12 06:01:35] 2026-03-12 05:00:28,690 | INFO     | current chi2=1.438894786650224 (change=53.011383792892296 %)
[2026-03-12 06:01:35] 2026-03-12 05:00:28,691 | INFO     | sum of square deviations: 6880054580.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,694 | INFO     | sum of deviations: 54660559872.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,694 | INFO     | mean x: 1773282453.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,694 | INFO     | mean y: 2503524.5978647685
[2026-03-12 06:01:35] 2026-03-12 05:00:28,694 | INFO     | intersect: -14085845712.331232
[2026-03-12 06:01:35] 2026-03-12 05:00:28,695 | INFO     | chi2: 1.4391782803472604
[2026-03-12 06:01:35] 2026-03-12 05:00:28,695 | INFO     | current chi2=1.4391782803472604 (change=-0.019702183902992353 %)
[2026-03-12 06:01:35] 2026-03-12 05:00:28,695 | INFO     | right removable region: 280
[2026-03-12 06:01:35] 2026-03-12 05:00:28,695 | INFO     | sum of square deviations: 7253894147.5
[2026-03-12 06:01:35] 2026-03-12 05:00:28,698 | INFO     | sum of deviations: -25726846624.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,699 | INFO     | mean x: 1773282910.5
[2026-03-12 06:01:35] 2026-03-12 05:00:28,699 | INFO     | mean y: 2505562.3706293707
[2026-03-12 06:01:35] 2026-03-12 05:00:28,699 | INFO     | intersect: 6291676114.317096
[2026-03-12 06:01:35] 2026-03-12 05:00:28,699 | INFO     | chi2: 1.6792521826977929
[2026-03-12 06:01:35] 2026-03-12 05:00:28,700 | INFO     | current chi2=1.6792521826977929 (change=45.16226129957102 %)
[2026-03-12 06:01:35] 2026-03-12 05:00:28,700 | INFO     | sum of square deviations: 6880054580.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,703 | INFO     | sum of deviations: -21965019263.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,703 | INFO     | mean x: 1773283063.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,703 | INFO     | mean y: 2504005.1601423486
[2026-03-12 06:01:35] 2026-03-12 05:00:28,703 | INFO     | intersect: 5663824883.4527445
[2026-03-12 06:01:35] 2026-03-12 05:00:28,704 | INFO     | chi2: 1.6580664262298659
[2026-03-12 06:01:35] 2026-03-12 05:00:28,704 | INFO     | current chi2=1.6580664262298659 (change=1.2616185160403437 %)
[2026-03-12 06:01:35] 2026-03-12 05:00:28,704 | INFO     | left removable region: 20
[2026-03-12 06:01:35] 2026-03-12 05:00:28,705 | INFO     | sum of square deviations: 5449944045.0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,707 | INFO     | sum of deviations: 10348571858.999998
[2026-03-12 06:01:35] 2026-03-12 05:00:28,707 | INFO     | mean x: 1773283032.5
[2026-03-12 06:01:35] 2026-03-12 05:00:28,707 | INFO     | mean y: 2522163.869230769
[2026-03-12 06:01:35] 2026-03-12 05:00:28,708 | INFO     | intersect: -3364658624.8964047
[2026-03-12 06:01:35] 2026-03-12 05:00:28,708 | INFO     | chi2: 0.0006531254829414488
[2026-03-12 06:01:35] 2026-03-12 05:00:28,708 | INFO     | current memory leak: 1.90 B/s (using 260 data points, chi2=0.00)
[2026-03-12 06:01:35] 2026-03-12 05:00:28,709 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-03-12 06:01:35] 2026-03-12 05:00:28,709 | INFO     | ..............................
[2026-03-12 06:01:35] 2026-03-12 05:00:28,709 | INFO     | . Timing measurements:
[2026-03-12 06:01:35] 2026-03-12 05:00:28,709 | INFO     | . get job = 0 s
[2026-03-12 06:01:35] 2026-03-12 05:00:28,709 | INFO     | . initial setup = 8 s
[2026-03-12 06:01:35] 2026-03-12 05:00:28,710 | INFO     | . payload setup = 9 s
[2026-03-12 06:01:35] 2026-03-12 05:00:28,710 | INFO     | . stage-in = 0 s
[2026-03-12 06:01:35] 2026-03-12 05:00:28,710 | INFO     | . payload execution = 17711 s
[2026-03-12 06:01:35] 2026-03-12 05:00:28,710 | INFO     | . stage-out = 4 s
[2026-03-12 06:01:35] 2026-03-12 05:00:28,713 | INFO     | . log creation = 1 s
[2026-03-12 06:01:35] 2026-03-12 05:00:28,713 | INFO     | ..............................
[2026-03-12 06:01:35] 2026-03-12 05:00:28,847 | INFO     | 
[2026-03-12 06:01:35] 2026-03-12 05:00:28,848 | INFO     | job summary report
[2026-03-12 06:01:35] 2026-03-12 05:00:28,848 | INFO     | --------------------------------------------------
[2026-03-12 06:01:35] 2026-03-12 05:00:28,848 | INFO     | PanDA job id: 7049740061
[2026-03-12 06:01:35] 2026-03-12 05:00:28,848 | INFO     | task id: 48998022
[2026-03-12 06:01:35] 2026-03-12 05:00:28,848 | INFO     | errors: (none)
[2026-03-12 06:01:35] 2026-03-12 05:00:28,848 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 06:01:35] 2026-03-12 05:00:28,848 | INFO     | pilot state: finished 
[2026-03-12 06:01:35] 2026-03-12 05:00:28,848 | INFO     | transexitcode: 0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,848 | INFO     | exeerrorcode: 0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,849 | INFO     | exeerrordiag: 
[2026-03-12 06:01:35] 2026-03-12 05:00:28,849 | INFO     | exitcode: 0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,849 | INFO     | exitmsg: OK
[2026-03-12 06:01:35] 2026-03-12 05:00:28,849 | INFO     | cpuconsumptiontime: 69410 s
[2026-03-12 06:01:35] 2026-03-12 05:00:28,849 | INFO     | nevents: 400
[2026-03-12 06:01:35] 2026-03-12 05:00:28,849 | INFO     | neventsw: 0
[2026-03-12 06:01:35] 2026-03-12 05:00:28,849 | INFO     | pid: 2769
[2026-03-12 06:01:35] 2026-03-12 05:00:28,849 | INFO     | pgrp: 2769
[2026-03-12 06:01:35] 2026-03-12 05:00:28,849 | INFO     | corecount: 8
[2026-03-12 06:01:35] 2026-03-12 05:00:28,850 | INFO     | event service: False
[2026-03-12 06:01:35] 2026-03-12 05:00:28,850 | INFO     | sizes: {0: 2279195, 1: 2280313, 2: 2280313, 17724: 2312458, 17729: 2321456, 17730: 2321512, 17733: 2321834}
[2026-03-12 06:01:35] 2026-03-12 05:00:28,850 | INFO     | --------------------------------------------------
[2026-03-12 06:01:35] 2026-03-12 05:00:28,850 | INFO     | 
[2026-03-12 06:01:35] 2026-03-12 05:00:28,850 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-03-12 06:01:35] 2026-03-12 05:00:29,289 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,289 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,289 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,289 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,289 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,289 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,290 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,290 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,290 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,290 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,290 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,290 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,290 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,290 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,291 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,291 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,291 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 06:01:35] 2026-03-12 05:00:29,291 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,291 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 06:01:35] 2026-03-12 05:00:29,291 | INFO     | job 7049740061 has completed (purged errors)
[2026-03-12 06:01:35] 2026-03-12 05:00:29,291 | INFO     | overall cleanup function is called
[2026-03-12 06:01:35] 2026-03-12 05:00:30,300 | INFO     | --- collectZombieJob: --- 10, [2769]
[2026-03-12 06:01:35] 2026-03-12 05:00:30,300 | INFO     | zombie collector waiting for pid 2769
[2026-03-12 06:01:35] 2026-03-12 05:00:30,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 06:01:35] 2026-03-12 05:00:30,301 | INFO     | collected zombie processes
[2026-03-12 06:01:35] 2026-03-12 05:00:30,301 | INFO     | will attempt to kill all subprocesses of pid=2769
[2026-03-12 06:01:35] 2026-03-12 05:00:30,399 | INFO     | process IDs to be killed: [2769] (in reverse order)
[2026-03-12 06:01:35] 2026-03-12 05:00:31,354 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 06:01:35] 2026-03-12 05:00:31,354 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 06:01:35] 2026-03-12 05:00:31,356 | INFO     | did not find any defunct processes belonging to 2769
[2026-03-12 06:01:35] 2026-03-12 05:00:31,358 | INFO     | did not find any defunct processes belonging to 2769
[2026-03-12 06:01:35] 2026-03-12 05:00:31,358 | INFO     | ready for new job
[2026-03-12 06:01:35] 2026-03-12 05:00:31,358 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 06:01:35] 2026-03-12 05:00:31,360 | INFO     | **************************************
[2026-03-12 06:01:35] 2026-03-12 05:00:31,361 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 06:01:35] 2026-03-12 05:00:31,361 | INFO     | **************************************
[2026-03-12 06:01:35] 2026-03-12 05:00:31,361 | INFO     | 
[2026-03-12 06:01:35] 2026-03-12 05:00:31,362 | INFO     | pilot is running in a VM
[2026-03-12 06:01:35] 2026-03-12 05:00:31,362 | INFO     | architecture information:
[2026-03-12 06:01:35] 2026-03-12 05:00:31,376 | INFO     | executing command: cat /etc/os-release
[2026-03-12 06:01:35] 2026-03-12 05:00:31,711 | INFO     | cat /etc/os-release:
[2026-03-12 06:01:35] NAME="CentOS Linux"
[2026-03-12 06:01:35] VERSION="7 (Core)"
[2026-03-12 06:01:35] ID="centos"
[2026-03-12 06:01:35] ID_LIKE="rhel fedora"
[2026-03-12 06:01:35] VERSION_ID="7"
[2026-03-12 06:01:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 06:01:35] ANSI_COLOR="0;31"
[2026-03-12 06:01:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 06:01:35] HOME_URL="https://www.centos.org/"
[2026-03-12 06:01:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 06:01:35] 
[2026-03-12 06:01:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 06:01:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 06:01:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 06:01:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 06:01:35] 
[2026-03-12 06:01:35] 2026-03-12 05:00:31,711 | INFO     | **************************************
[2026-03-12 06:01:35] 2026-03-12 05:00:32,214 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-03-12 06:01:35] 2026-03-12 05:00:32,421 | INFO     | sufficient remaining disk space (496866689024 B)
[2026-03-12 06:01:35] 2026-03-12 05:00:32,421 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 06:01:35] 2026-03-12 05:00:32,422 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 06:01:35] 2026-03-12 05:00:32,422 | INFO     | update_server=False
[2026-03-12 06:01:35] 2026-03-12 05:00:32,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 06:01:35] 2026-03-12 05:00:32,426 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 06:01:35] 2026-03-12 05:00:32,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 06:01:35] 2026-03-12 05:00:32,531 | INFO     | all payload control threads have been joined
[2026-03-12 06:01:35] 2026-03-12 05:00:32,913 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 06:01:35] 2026-03-12 05:00:32,913 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 06:01:35] 2026-03-12 05:00:32,914 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 06:01:35] 2026-03-12 05:00:32,914 | INFO     | will abort loop
[2026-03-12 06:01:35] 2026-03-12 05:00:33,431 | INFO     | [job] retrieve thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:33,436 | INFO     | all data control threads have been joined
[2026-03-12 06:01:35] 2026-03-12 05:00:33,537 | INFO     | [payload] control thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:33,717 | INFO     | [payload] validate_post thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:33,731 | INFO     | all job control threads have been joined
[2026-03-12 06:01:35] 2026-03-12 05:00:33,740 | INFO     | [job] validate thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:33,862 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 06:01:35] 2026-03-12 05:00:33,919 | INFO     | [job] job monitor thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:33,956 | INFO     | [payload] failed_post thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:34,155 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:34,164 | INFO     | [data] copytool_in thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:34,267 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:34,433 | INFO     | [data] copytool_out thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:34,442 | INFO     | [data] control thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:34,712 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:34,737 | INFO     | [job] control thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:34,820 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:34,867 | INFO     | [job] queue monitor thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:00:36,436 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 06:01:35] 2026-03-12 05:01:01,011 | INFO     | PID=30750 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 06:01:35] 2026-03-12 05:01:01,012 | INFO     | .. there are 2 such processes running
[2026-03-12 06:01:35] 2026-03-12 05:01:01,013 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 06:01:35] 2026-03-12 05:01:01,013 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 06:01:35] 2026-03-12 05:01:01,013 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 06:01:35] 2026-03-12 05:01:24,156 | INFO     | [monitor] cgroup control has ended
[2026-03-12 06:01:35] 2026-03-12 05:01:24,657 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139975339923264)>', '<ExcThread(monitor, started 139974888367872)>']
[2026-03-12 06:01:35] 2026-03-12 05:01:25,157 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 06:01:35] 2026-03-12 05:01:25,157 | INFO     | [monitor] control thread has ended
[2026-03-12 06:01:35] 2026-03-12 05:01:29,683 | INFO     | all workflow threads have been joined
[2026-03-12 06:01:35] 2026-03-12 05:01:29,683 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 06:01:35] 2026-03-12 05:01:29,684 | INFO     | traces error code: 0
[2026-03-12 06:01:35] 2026-03-12 05:01:29,684 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 06:01:35] 2026-03-12 05:01:30,096 [wrapper] ==== pilot stdout END ====
[2026-03-12 06:01:35] 2026-03-12 05:01:30,181 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 06:01:35] 2026-03-12 05:01:30,298 [wrapper] pilotpid: 30750
[2026-03-12 06:01:35] 2026-03-12 05:01:30,363 [wrapper] Pilot exit status: 0
[2026-03-12 06:01:35] 2026-03-12 05:01:30,920 [wrapper] pandaids: 7049740061
[2026-03-12 06:01:35] 2026-03-12 05:01:32,038 [wrapper] cleanup supervisor_pilot  8878 30751
[2026-03-12 06:01:35] 2026-03-12 05:01:32,161 [wrapper] Test setup, not cleaning
[2026-03-12 06:01:35] 2026-03-12 05:01:32,271 [wrapper] apfmon messages muted
[2026-03-12 06:01:35] 2026-03-12 05:01:32,385 [wrapper] ==== wrapper stdout END ====
[2026-03-12 06:01:35] 2026-03-12 05:01:32,485 [wrapper] ==== wrapper stderr END ====
[2026-03-12 06:01:35]  *** Error codes and diagnostics ***
[2026-03-12 06:01:35]     "exeErrorCode": 0,
[2026-03-12 06:01:35]     "exeErrorDiag": "",
[2026-03-12 06:01:35]     "pilotErrorCode": 0,
[2026-03-12 06:01:35]     "pilotErrorDiag": "",
[2026-03-12 06:01:35]  *** Listing of results directory ***
[2026-03-12 06:01:35] total 566432
[2026-03-12 06:01:35] -rwx------. 1 boinc boinc     36322 Mar 11 11:24 runpilot2-wrapper.sh
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc      5111 Mar 11 11:24 queuedata.json
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc    585013 Mar 11 11:24 pilot3.tar.gz
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc       100 Mar 12 01:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 06:01:35] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 01:04 run_atlas
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc       105 Mar 12 01:04 job.xml
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc      6392 Mar 12 01:04 init_data.xml
[2026-03-12 06:01:35] -rw-r--r--. 2 boinc boinc 330539925 Mar 12 01:04 EVNT.48998020._000095.pool.root.1
[2026-03-12 06:01:35] -rw-r--r--. 2 boinc boinc     15845 Mar 12 01:04 start_atlas.sh
[2026-03-12 06:01:35] drwxrwx--x. 2 boinc boinc        68 Mar 12 01:04 shared
[2026-03-12 06:01:35] -rw-r--r--. 2 boinc boinc    597529 Mar 12 01:04 input.tar.gz
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc         0 Mar 12 01:04 boinc_lockfile
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc      2609 Mar 12 01:04 pandaJob.out
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc   1006235 Mar 12 01:04 agis_schedconf.cvmfs.json
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc       415 Mar 12 01:04 workernode_map.json
[2026-03-12 06:01:35] drwx------. 5 boinc boinc      4096 Mar 12 01:04 pilot3
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc 239550742 Mar 12 05:58 HITS.48998022._002489.pool.root.1
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc       530 Mar 12 05:59 boinc_task_state.xml
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc      1028 Mar 12 06:00 memory_monitor_summary.json
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc   1511578 Mar 12 06:00 agis_ddmendpoints.agis.ALL.json
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc    521488 Mar 12 06:00 log.48998022._002489.job.log.tgz.1
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc      6311 Mar 12 06:00 heartbeat.json
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc        95 Mar 12 06:01 pilot_heartbeat.json
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc      8192 Mar 12 06:01 boinc_mmap_file
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc        28 Mar 12 06:01 wrapper_checkpoint.txt
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc      5066 Mar 12 06:01 pilotlog.txt
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc   2485972 Mar 12 06:01 log.48998022._002489.job.log.1
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc       357 Mar 12 06:01 output.list
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc       620 Mar 12 06:01 runtime_log
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc   3020800 Mar 12 06:01 result.tar.gz
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc      8816 Mar 12 06:01 runtime_log.err
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc       655 Mar 12 06:01 rI9LDm0uVK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmxLjLDmUisnHn.diag
[2026-03-12 06:01:35] -rw-r--r--. 1 boinc boinc     20644 Mar 12 06:01 stderr.txt
[2026-03-12 06:01:35] HITS file was successfully produced:
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc 239550742 Mar 12 05:58 shared/HITS.pool.root.1
[2026-03-12 06:01:35]  *** Contents of shared directory: ***
[2026-03-12 06:01:35] total 560288
[2026-03-12 06:01:35] -rw-r--r--. 2 boinc boinc 330539925 Mar 12 01:04 ATLAS.root_0
[2026-03-12 06:01:35] -rw-r--r--. 2 boinc boinc     15845 Mar 12 01:04 start_atlas.sh
[2026-03-12 06:01:35] -rw-r--r--. 2 boinc boinc    597529 Mar 12 01:04 input.tar.gz
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc 239550742 Mar 12 05:58 HITS.pool.root.1
[2026-03-12 06:01:35] -rw-------. 1 boinc boinc   3020800 Mar 12 06:01 result.tar.gz
06:01:37 (27027): run_atlas exited; CPU time 69586.730735
06:01:37 (27027): called boinc_finish(0)

</stderr_txt>
]]>

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