Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:26:12 (32386): wrapper (7.7.26015): starting
13:26:12 (32386): wrapper: running run_atlas (--nthreads 8)
[2026-03-11 13:26:12] Arguments: --nthreads 8
[2026-03-11 13:26:12] Threads: 8
[2026-03-11 13:26:12] Checking for CVMFS
[2026-03-11 13:26:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 13:26:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 13:26:12] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 13:26:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 13:26:12] 2.11.0.0 7983 216864 101044 157153 0 186 2141578 4096001 2114 130560 4 4151574 99.149 10088893 374 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-11 13:26:12] CVMFS is ok
[2026-03-11 13:26:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 13:26:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 13:26:12] Further information can be found at the LHC@home message board.
[2026-03-11 13:26:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 13:26:12] Checking for apptainer binary...
[2026-03-11 13:26:12] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-11 13:26:12] apptainer is not installed, using version from CVMFS
[2026-03-11 13:26:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 13:26:13] WARNING: Environment variable TMPDIR already has value [/tmp/job_11292443/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node226
[2026-03-11 13:26:13] apptainer works
[2026-03-11 13:26:13] Set ATHENA_PROC_NUMBER=8
[2026-03-11 13:26:13] Set ATHENA_CORE_NUMBER=8
[2026-03-11 13:26:13] Starting ATLAS job with PandaID=7036220090
[2026-03-11 13:26:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11292443/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 14:55:32]  *** The last 200 lines of the pilot log: ***
[2026-03-11 14:55:32]  storage_token=
[2026-03-11 14:55:32]  surl=/tmp/job_11292443/atlas/pilot/slots/0/PanDA_Pilot-7036220090/log.48851750._000061.job.log.tgz.1
[2026-03-11 14:55:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/4f/log.48851750._000061.job.log.tgz.1
[2026-03-11 14:55:32]  workdir=None
[2026-03-11 14:55:32] ]
[2026-03-11 14:55:32] 2026-03-11 13:54:54,179 | INFO     | transferring file log.48851750._000061.job.log.tgz.1 from /tmp/job_11292443/atlas/pilot/slots/0/PanDA_Pilot-7036220090/log.48851750._000061.job.log.tgz.1 to /tmp/j
[2026-03-11 14:55:32] 2026-03-11 13:54:54,179 | INFO     | executing command: /usr/bin/env mv /tmp/job_11292443/atlas/pilot/slots/0/PanDA_Pilot-7036220090/log.48851750._000061.job.log.tgz.1 /tmp/job_11292443/atlas/pilot/sl
[2026-03-11 14:55:32] 2026-03-11 13:54:54,187 | INFO     | adding to output.list: log.48851750._000061.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/4f/log.48851750._000061.job.log.tg
[2026-03-11 14:55:32] 2026-03-11 13:54:54,187 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-11 14:55:32] 2026-03-11 13:54:54,187 | INFO     | summary of transferred files:
[2026-03-11 14:55:32] 2026-03-11 13:54:54,187 | INFO     |  -- lfn=log.48851750._000061.job.log.tgz.1, status_code=0, status=transferred
[2026-03-11 14:55:32] 2026-03-11 13:54:54,187 | INFO     | stage-out finished correctly
[2026-03-11 14:55:32] 2026-03-11 13:54:54,652 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-11 14:55:32] 2026-03-11 13:54:55,467 | INFO     | time since job start (5316s) is within the limit (349056.0s)
[2026-03-11 14:55:32] 2026-03-11 13:54:55,927 | WARNING  | process 8903 can no longer be monitored (due to stat problems) - aborting
[2026-03-11 14:55:32] 2026-03-11 13:54:55,927 | INFO     | using path: /tmp/job_11292443/atlas/pilot/slots/0/PanDA_Pilot-7036220090/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 14:55:32] 2026-03-11 13:54:55,928 | INFO     | using path: /tmp/job_11292443/atlas/pilot/slots/0/PanDA_Pilot-7036220090/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 14:55:32] 2026-03-11 13:54:55,928 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-11 14:55:32] 2026-03-11 13:54:55,928 | WARNING  | maxPSS not found in memory monitor output
[2026-03-11 14:55:32] 2026-03-11 13:54:55,928 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3215395 B
[2026-03-11 14:55:32] 2026-03-11 13:54:55,928 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15859 B
[2026-03-11 14:55:32] 2026-03-11 13:54:55,928 | INFO     | executing command: df -mP /tmp/job_11292443/atlas/pilot/slots/0
[2026-03-11 14:55:32] 2026-03-11 13:54:55,935 | INFO     | sufficient remaining disk space (227035578368 B)
[2026-03-11 14:55:32] 2026-03-11 13:54:55,935 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-11 14:55:32] 2026-03-11 13:54:55,935 | INFO     | size of work directory /tmp/job_11292443/atlas/pilot/slots/0/PanDA_Pilot-7036220090: 3522508 B (within 5033164800 B limit)
[2026-03-11 14:55:32] 2026-03-11 13:54:55,936 | INFO     | pfn file=/tmp/job_11292443/atlas/pilot/slots/0/PanDA_Pilot-7036220090/HITS.48851750._000061.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-11 14:55:32] 2026-03-11 13:54:55,936 | INFO     | total size of present files: 0 B (workdir size: 3522508 B)
[2026-03-11 14:55:32] 2026-03-11 13:54:55,936 | INFO     | output file size check: skipping output file /tmp/job_11292443/atlas/pilot/slots/0/PanDA_Pilot-7036220090/HITS.48851750._000061.pool.root.1 since it does not exist
[2026-03-11 14:55:32] 2026-03-11 13:54:56,025 | INFO     | number of running child processes to parent process 8903: 1
[2026-03-11 14:55:32] 2026-03-11 13:54:56,025 | INFO     | maximum number of monitored processes: 7
[2026-03-11 14:55:32] 2026-03-11 13:54:56,813 | INFO     | job 7036220090 has state=finished
[2026-03-11 14:55:32] 2026-03-11 13:54:56,813 | INFO     | preparing for final server update for job 7036220090 in state='finished'
[2026-03-11 14:55:32] 2026-03-11 13:54:56,813 | INFO     | reading metadata from: /tmp/job_11292443/atlas/pilot/slots/0/PanDA_Pilot-7036220090/jobReport.json
[2026-03-11 14:55:32] 2026-03-11 13:54:56,814 | INFO     | added worker_node to metadata from /tmp/job_11292443/atlas/pilot/slots/0/workernode_map.json
[2026-03-11 14:55:32] 2026-03-11 13:54:56,814 | INFO     | this job has now completed (state=finished)
[2026-03-11 14:55:32] 2026-03-11 13:54:56,814 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-11 14:55:32] 2026-03-11 13:54:56,814 | INFO     | log transfer has been attempted: DONE
[2026-03-11 14:55:32] 2026-03-11 13:54:56,815 | INFO     | job 7036220090 has finished - writing final server update
[2026-03-11 14:55:32] 2026-03-11 13:54:56,815 | INFO     | total number of processed events: 400 (read)
[2026-03-11 14:55:32] 2026-03-11 13:54:56,832 | INFO     | using path: /tmp/job_11292443/atlas/pilot/slots/0/PanDA_Pilot-7036220090/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 14:55:32] 2026-03-11 13:54:56,832 | INFO     | extracted standard info from prmon json
[2026-03-11 14:55:32] 2026-03-11 13:54:56,832 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 14:55:32] 2026-03-11 13:54:56,833 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 14:55:32] 2026-03-11 13:54:56,833 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 14:55:32] 2026-03-11 13:54:56,833 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 14:55:32] 2026-03-11 13:54:56,834 | INFO     | fitting pss+swap vs Time
[2026-03-11 14:55:32] 2026-03-11 13:54:56,834 | INFO     | sum of square deviations: 158737860.0
[2026-03-11 14:55:32] 2026-03-11 13:54:56,834 | INFO     | sum of deviations: 53864685033.50001
[2026-03-11 14:55:32] 2026-03-11 13:54:56,834 | INFO     | mean x: 1773234709.5
[2026-03-11 14:55:32] 2026-03-11 13:54:56,834 | INFO     | mean y: 2182269.7875
[2026-03-11 14:55:32] 2026-03-11 13:54:56,834 | INFO     | intersect: -601711417231.2224
[2026-03-11 14:55:32] 2026-03-11 13:54:56,834 | INFO     | chi2: 3.594084338479341
[2026-03-11 14:55:32] 2026-03-11 13:54:56,834 | INFO     | current memory leak: 339.33 B/s (using 80 data points, chi2=3.59)
[2026-03-11 14:55:32] 2026-03-11 13:54:56,834 | INFO     | could have reported an average CPU frequency of 2378 MHz (6 samples)
[2026-03-11 14:55:32] 2026-03-11 13:54:56,835 | INFO     | ..............................
[2026-03-11 14:55:32] 2026-03-11 13:54:56,835 | INFO     | . Timing measurements:
[2026-03-11 14:55:32] 2026-03-11 13:54:56,835 | INFO     | . get job = 0 s
[2026-03-11 14:55:32] 2026-03-11 13:54:56,835 | INFO     | . initial setup = 2 s
[2026-03-11 14:55:32] 2026-03-11 13:54:56,835 | INFO     | . payload setup = 2 s
[2026-03-11 14:55:32] 2026-03-11 13:54:56,835 | INFO     | . stage-in = 0 s
[2026-03-11 14:55:32] 2026-03-11 13:54:56,835 | INFO     | . payload execution = 5297 s
[2026-03-11 14:55:32] 2026-03-11 13:54:56,835 | INFO     | . stage-out = 0 s
[2026-03-11 14:55:32] 2026-03-11 13:54:56,835 | INFO     | . log creation = 0 s
[2026-03-11 14:55:32] 2026-03-11 13:54:56,835 | INFO     | ..............................
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | 
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | job summary report
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | --------------------------------------------------
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | PanDA job id: 7036220090
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | task id: 48851750
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | errors: (none)
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | pilot state: finished 
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | transexitcode: 0
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | exeerrorcode: 0
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | exeerrordiag: 
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | exitcode: 0
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | exitmsg: OK
[2026-03-11 14:55:32] 2026-03-11 13:54:57,182 | INFO     | cpuconsumptiontime: 27954 s
[2026-03-11 14:55:32] 2026-03-11 13:54:57,183 | INFO     | nevents: 400
[2026-03-11 14:55:32] 2026-03-11 13:54:57,183 | INFO     | neventsw: 0
[2026-03-11 14:55:32] 2026-03-11 13:54:57,183 | INFO     | pid: 8903
[2026-03-11 14:55:32] 2026-03-11 13:54:57,183 | INFO     | pgrp: 8903
[2026-03-11 14:55:32] 2026-03-11 13:54:57,183 | INFO     | corecount: 8
[2026-03-11 14:55:32] 2026-03-11 13:54:57,183 | INFO     | event service: False
[2026-03-11 14:55:32] 2026-03-11 13:54:57,183 | INFO     | sizes: {0: 2279894, 1: 2280466, 11: 2280466, 5304: 2316009, 5307: 2316175}
[2026-03-11 14:55:32] 2026-03-11 13:54:57,183 | INFO     | --------------------------------------------------
[2026-03-11 14:55:32] 2026-03-11 13:54:57,183 | INFO     | 
[2026-03-11 14:55:32] 2026-03-11 13:54:57,183 | INFO     | executing command: ls -lF /tmp/job_11292443/atlas/pilot/slots/0
[2026-03-11 14:55:32] 2026-03-11 13:54:57,192 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,192 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,192 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,192 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,192 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,192 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | job 7036220090 has completed (purged errors)
[2026-03-11 14:55:32] 2026-03-11 13:54:57,193 | INFO     | overall cleanup function is called
[2026-03-11 14:55:32] 2026-03-11 13:54:58,199 | INFO     | --- collectZombieJob: --- 10, [8903]
[2026-03-11 14:55:32] 2026-03-11 13:54:58,199 | INFO     | zombie collector waiting for pid 8903
[2026-03-11 14:55:32] 2026-03-11 13:54:58,199 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 14:55:32] 2026-03-11 13:54:58,199 | INFO     | collected zombie processes
[2026-03-11 14:55:32] 2026-03-11 13:54:58,199 | INFO     | will attempt to kill all subprocesses of pid=8903
[2026-03-11 14:55:32] 2026-03-11 13:54:58,289 | INFO     | process IDs to be killed: [8903] (in reverse order)
[2026-03-11 14:55:32] 2026-03-11 13:54:58,319 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 14:55:32] 2026-03-11 13:54:58,320 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 14:55:32] 2026-03-11 13:54:58,323 | INFO     | did not find any defunct processes belonging to 8903
[2026-03-11 14:55:32] 2026-03-11 13:54:58,326 | INFO     | did not find any defunct processes belonging to 8903
[2026-03-11 14:55:32] 2026-03-11 13:54:58,326 | INFO     | ready for new job
[2026-03-11 14:55:32] 2026-03-11 13:54:58,326 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 14:55:32] 2026-03-11 13:54:58,326 | INFO     | **************************************
[2026-03-11 14:55:32] 2026-03-11 13:54:58,327 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 14:55:32] 2026-03-11 13:54:58,327 | INFO     | **************************************
[2026-03-11 14:55:32] 2026-03-11 13:54:58,327 | INFO     | 
[2026-03-11 14:55:32] 2026-03-11 13:54:58,341 | INFO     | architecture information:
[2026-03-11 14:55:32] 2026-03-11 13:54:58,341 | INFO     | executing command: cat /etc/os-release
[2026-03-11 14:55:32] 2026-03-11 13:54:58,348 | INFO     | cat /etc/os-release:
[2026-03-11 14:55:32] NAME="CentOS Linux"
[2026-03-11 14:55:32] VERSION="7 (Core)"
[2026-03-11 14:55:32] ID="centos"
[2026-03-11 14:55:32] ID_LIKE="rhel fedora"
[2026-03-11 14:55:32] VERSION_ID="7"
[2026-03-11 14:55:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 14:55:32] ANSI_COLOR="0;31"
[2026-03-11 14:55:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 14:55:32] HOME_URL="https://www.centos.org/"
[2026-03-11 14:55:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 14:55:32] 
[2026-03-11 14:55:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 14:55:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 14:55:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 14:55:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 14:55:32] 
[2026-03-11 14:55:32] 2026-03-11 13:54:58,348 | INFO     | **************************************
[2026-03-11 14:55:32] 2026-03-11 13:54:58,850 | INFO     | executing command: df -mP /tmp/job_11292443/atlas/pilot/slots/0
[2026-03-11 14:55:32] 2026-03-11 13:54:58,856 | INFO     | sufficient remaining disk space (227039772672 B)
[2026-03-11 14:55:32] 2026-03-11 13:54:58,856 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 14:55:32] 2026-03-11 13:54:58,856 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 14:55:32] 2026-03-11 13:54:58,856 | INFO     | update_server=False
[2026-03-11 14:55:32] 2026-03-11 13:54:58,856 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 14:55:32] 2026-03-11 13:54:58,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 14:55:32] 2026-03-11 13:54:59,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 14:55:32] 2026-03-11 13:54:59,533 | INFO     | aborting loop
[2026-03-11 14:55:32] 2026-03-11 13:54:59,584 | INFO     | all data control threads have been joined
[2026-03-11 14:55:32] 2026-03-11 13:54:59,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 14:55:32] 2026-03-11 13:54:59,862 | INFO     | [job] retrieve thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:54:59,862 | INFO     | [job] queue monitor thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:54:59,972 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:00,066 | INFO     | [data] copytool_in thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:00,150 | INFO     | [payload] failed_post thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:00,163 | INFO     | all payload control threads have been joined
[2026-03-11 14:55:32] 2026-03-11 13:55:00,305 | INFO     | all job control threads have been joined
[2026-03-11 14:55:32] 2026-03-11 13:55:00,538 | INFO     | [job] job monitor thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:00,589 | INFO     | [data] control thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:00,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 14:55:32] 2026-03-11 13:55:00,765 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:01,088 | INFO     | [job] validate thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:01,168 | INFO     | [payload] control thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:01,178 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:01,212 | INFO     | [payload] validate_post thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:01,311 | INFO     | [job] control thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:01,748 | INFO     | [data] copytool_out thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:04,709 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:09,361 | INFO     | job.realtimelogging is not enabled
[2026-03-11 14:55:32] 2026-03-11 13:55:10,366 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 14:55:32] 2026-03-11 13:55:26,809 | INFO     | [monitor] cgroup control has ended
[2026-03-11 14:55:32] 2026-03-11 13:55:27,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-11 14:55:32] 2026-03-11 13:55:28,639 | INFO     | PID=4044 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-11 14:55:32] 2026-03-11 13:55:28,639 | INFO     | .. there are 2 such processes running
[2026-03-11 14:55:32] 2026-03-11 13:55:28,639 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 14:55:32] 2026-03-11 13:55:28,639 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 14:55:32] 2026-03-11 13:55:28,639 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 14:55:32] 2026-03-11 13:55:28,639 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 14:55:32] 2026-03-11 13:55:28,639 | INFO     | [monitor] control thread has ended
[2026-03-11 14:55:32] 2026-03-11 13:55:32,466 | INFO     | all workflow threads have been joined
[2026-03-11 14:55:32] 2026-03-11 13:55:32,466 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 14:55:32] 2026-03-11 13:55:32,466 | INFO     | traces error code: 0
[2026-03-11 14:55:32] 2026-03-11 13:55:32,466 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 14:55:32] 2026-03-11 13:55:32,519 [wrapper] ==== pilot stdout END ====
[2026-03-11 14:55:32] 2026-03-11 13:55:32,520 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 14:55:32] 2026-03-11 13:55:32,521 [wrapper] pilotpid: 4044
[2026-03-11 14:55:32] 2026-03-11 13:55:32,522 [wrapper] Pilot exit status: 0
[2026-03-11 14:55:32] 2026-03-11 13:55:32,526 [wrapper] pandaids: 7036220090
[2026-03-11 14:55:32] 2026-03-11 13:55:32,546 [wrapper] cleanup supervisor_pilot 31984 4045
[2026-03-11 14:55:32] 2026-03-11 13:55:32,547 [wrapper] Test setup, not cleaning
[2026-03-11 14:55:32] 2026-03-11 13:55:32,548 [wrapper] apfmon messages muted
[2026-03-11 14:55:32] 2026-03-11 13:55:32,549 [wrapper] ==== wrapper stdout END ====
[2026-03-11 14:55:32] 2026-03-11 13:55:32,550 [wrapper] ==== wrapper stderr END ====
[2026-03-11 14:55:32]  *** Error codes and diagnostics ***
[2026-03-11 14:55:32]     "exeErrorCode": 0,
[2026-03-11 14:55:32]     "exeErrorDiag": "",
[2026-03-11 14:55:32]     "pilotErrorCode": 0,
[2026-03-11 14:55:32]     "pilotErrorDiag": "",
[2026-03-11 14:55:32]  *** Listing of results directory ***
[2026-03-11 14:55:32] total 450184
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user    584627 Mar  3 08:05 pilot3.tar.gz
[2026-03-11 14:55:32] -rwx------ 1 mf493845 unix-user     36322 Mar  3 08:05 runpilot2-wrapper.sh
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user      5111 Mar  3 08:05 queuedata.json
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user       100 Mar 11 12:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 14:55:32] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 11 12:22 run_atlas
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user       105 Mar 11 12:22 job.xml
[2026-03-11 14:55:32] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 11 13:26 start_atlas.sh
[2026-03-11 14:55:32] drwxrwx--x 2 mf493845 unix-user       100 Mar 11 13:26 shared
[2026-03-11 14:55:32] -rw-r--r-- 2 mf493845 unix-user    597956 Mar 11 13:26 input.tar.gz
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user      6390 Mar 11 13:26 init_data.xml
[2026-03-11 14:55:32] -rw-r--r-- 2 mf493845 unix-user 250111030 Mar 11 13:26 EVNT.48460885._000003.pool.root.1
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user         0 Mar 11 13:26 boinc_setup_complete
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user      8192 Mar 11 13:26 boinc_mmap_file
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user         0 Mar 11 13:26 boinc_lockfile
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user      2621 Mar 11 13:26 pandaJob.out
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user   1007002 Mar 11 13:26 agis_schedconf.cvmfs.json
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user   1511578 Mar 11 13:26 agis_ddmendpoints.agis.ALL.json
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user       420 Mar 11 13:26 workernode_map.json
[2026-03-11 14:55:32] drwx------ 5 mf493845 unix-user       440 Mar 11 13:26 pilot3
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user 204710227 Mar 11 14:54 HITS.48851750._000061.pool.root.1
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user      1021 Mar 11 14:54 memory_monitor_summary.json
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user    330754 Mar 11 14:54 log.48851750._000061.job.log.tgz.1
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user      6316 Mar 11 14:54 heartbeat.json
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user        95 Mar 11 14:55 pilot_heartbeat.json
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user      4902 Mar 11 14:55 pilotlog.txt
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user    798230 Mar 11 14:55 log.48851750._000061.job.log.1
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user       357 Mar 11 14:55 output.list
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user       620 Mar 11 14:55 runtime_log
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user   1146880 Mar 11 14:55 result.tar.gz
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user      9219 Mar 11 14:55 runtime_log.err
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user       643 Mar 11 14:55 fXyKDmrzYH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmctFLDmTZ4txn.diag
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user     23036 Mar 11 14:55 stderr.txt
[2026-03-11 14:55:32] HITS file was successfully produced:
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user 204710227 Mar 11 14:54 shared/HITS.pool.root.1
[2026-03-11 14:55:32]  *** Contents of shared directory: ***
[2026-03-11 14:55:32] total 445888
[2026-03-11 14:55:32] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 11 13:26 start_atlas.sh
[2026-03-11 14:55:32] -rw-r--r-- 2 mf493845 unix-user    597956 Mar 11 13:26 input.tar.gz
[2026-03-11 14:55:32] -rw-r--r-- 2 mf493845 unix-user 250111030 Mar 11 13:26 ATLAS.root_0
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user 204710227 Mar 11 14:54 HITS.pool.root.1
[2026-03-11 14:55:32] -rw------- 1 mf493845 unix-user   1146880 Mar 11 14:55 result.tar.gz
14:55:34 (32386): run_atlas exited; CPU time 28035.264542
14:55:34 (32386): called boinc_finish(0)

</stderr_txt>
]]>

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