Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:34:19 (3052): wrapper (7.7.26015): starting
13:34:19 (3052): wrapper: running run_atlas (--nthreads 8)
[2026-03-11 13:34:19] Arguments: --nthreads 8
[2026-03-11 13:34:19] Threads: 8
[2026-03-11 13:34:19] Checking for CVMFS
[2026-03-11 13:34:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 13:34:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 13:34:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 13:34:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 13:34:19] 2.11.0.0 9302 10149 52264 157153 3 186 2854354 4096000 1869 130560 0 240862 99.332 618954 261 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-11 13:34:19] CVMFS is ok
[2026-03-11 13:34:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 13:34:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 13:34:19] Further information can be found at the LHC@home message board.
[2026-03-11 13:34:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 13:34:19] Checking for apptainer binary...
[2026-03-11 13:34:19] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-11 13:34:19] apptainer is not installed, using version from CVMFS
[2026-03-11 13:34:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 13:34:19] WARNING: Environment variable TMPDIR already has value [/tmp/job_11292494/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node105
[2026-03-11 13:34:19] apptainer works
[2026-03-11 13:34:19] Set ATHENA_PROC_NUMBER=8
[2026-03-11 13:34:19] Set ATHENA_CORE_NUMBER=8
[2026-03-11 13:34:19] Starting ATLAS job with PandaID=7036220084
[2026-03-11 13:34:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11292494/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 15:01:40]  *** The last 200 lines of the pilot log: ***
[2026-03-11 15:01:40]  guid=615b05e0-2599-410f-89d7-6facff52723a
[2026-03-11 15:01:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-11 15:01:40]  is_altstaged=None
[2026-03-11 15:01:40]  is_tar=False
[2026-03-11 15:01:40]  lfn=log.48851750._000055.job.log.tgz.1
[2026-03-11 15:01:40]  mtime=0
[2026-03-11 15:01:40]  protocol_id=None
[2026-03-11 15:01:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-11 15:01:40]  replicas=None
[2026-03-11 15:01:40]  scope=mc23_13p6TeV
[2026-03-11 15:01:40]  status=None
[2026-03-11 15:01:40]  status_code=0
[2026-03-11 15:01:40]  storage_token=
[2026-03-11 15:01:40]  surl=/tmp/job_11292494/atlas/pilot/slots/0/PanDA_Pilot-7036220084/log.48851750._000055.job.log.tgz.1
[2026-03-11 15:01:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/68/log.48851750._000055.job.log.tgz.1
[2026-03-11 15:01:40]  workdir=None
[2026-03-11 15:01:40] ]
[2026-03-11 15:01:40] 2026-03-11 14:00:39,520 | INFO     | transferring file log.48851750._000055.job.log.tgz.1 from /tmp/job_11292494/atlas/pilot/slots/0/PanDA_Pilot-7036220084/log.48851750._000055.job.log.tgz.1 to /tmp/j
[2026-03-11 15:01:40] 2026-03-11 14:00:39,520 | INFO     | executing command: /usr/bin/env mv /tmp/job_11292494/atlas/pilot/slots/0/PanDA_Pilot-7036220084/log.48851750._000055.job.log.tgz.1 /tmp/job_11292494/atlas/pilot/sl
[2026-03-11 15:01:40] 2026-03-11 14:00:39,528 | INFO     | adding to output.list: log.48851750._000055.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/68/log.48851750._000055.job.log.tg
[2026-03-11 15:01:40] 2026-03-11 14:00:39,528 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-11 15:01:40] 2026-03-11 14:00:39,528 | INFO     | summary of transferred files:
[2026-03-11 15:01:40] 2026-03-11 14:00:39,528 | INFO     |  -- lfn=log.48851750._000055.job.log.tgz.1, status_code=0, status=transferred
[2026-03-11 15:01:40] 2026-03-11 14:00:39,528 | INFO     | stage-out finished correctly
[2026-03-11 15:01:40] 2026-03-11 14:00:40,028 | INFO     | time since job start (5174s) is within the limit (349056.0s)
[2026-03-11 15:01:40] 2026-03-11 14:00:40,913 | INFO     | monitor loop #390: job 0:7036220084 is in state 'finished'
[2026-03-11 15:01:40] 2026-03-11 14:00:40,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-11 15:01:40] 2026-03-11 14:00:41,351 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-11 15:01:40] 2026-03-11 14:00:42,034 | INFO     | time since job start (5176s) is within the limit (349056.0s)
[2026-03-11 15:01:40] 2026-03-11 14:00:43,201 | INFO     | job 7036220084 has state=finished
[2026-03-11 15:01:40] 2026-03-11 14:00:43,201 | INFO     | preparing for final server update for job 7036220084 in state='finished'
[2026-03-11 15:01:40] 2026-03-11 14:00:43,201 | INFO     | reading metadata from: /tmp/job_11292494/atlas/pilot/slots/0/PanDA_Pilot-7036220084/jobReport.json
[2026-03-11 15:01:40] 2026-03-11 14:00:43,203 | INFO     | added worker_node to metadata from /tmp/job_11292494/atlas/pilot/slots/0/workernode_map.json
[2026-03-11 15:01:40] 2026-03-11 14:00:43,203 | INFO     | this job has now completed (state=finished)
[2026-03-11 15:01:40] 2026-03-11 14:00:43,203 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-11 15:01:40] 2026-03-11 14:00:43,203 | INFO     | log transfer has been attempted: DONE
[2026-03-11 15:01:40] 2026-03-11 14:00:43,203 | INFO     | job 7036220084 has finished - writing final server update
[2026-03-11 15:01:40] 2026-03-11 14:00:43,203 | INFO     | total number of processed events: 400 (read)
[2026-03-11 15:01:40] 2026-03-11 14:00:43,220 | INFO     | using path: /tmp/job_11292494/atlas/pilot/slots/0/PanDA_Pilot-7036220084/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 15:01:40] 2026-03-11 14:00:43,220 | INFO     | extracted standard info from prmon json
[2026-03-11 15:01:40] 2026-03-11 14:00:43,220 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 15:01:40] 2026-03-11 14:00:43,220 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 15:01:40] 2026-03-11 14:00:43,220 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 15:01:40] 2026-03-11 14:00:43,220 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 15:01:40] 2026-03-11 14:00:43,221 | INFO     | fitting pss+swap vs Time
[2026-03-11 15:01:40] 2026-03-11 14:00:43,221 | INFO     | sum of square deviations: 147126479.5
[2026-03-11 15:01:40] 2026-03-11 14:00:43,221 | INFO     | sum of deviations: 46062017165.5
[2026-03-11 15:01:40] 2026-03-11 14:00:43,221 | INFO     | mean x: 1773235134.5
[2026-03-11 15:01:40] 2026-03-11 14:00:43,221 | INFO     | mean y: 2232271.346153846
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | intersect: -555158113312.8538
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | chi2: 3.0456758911931576
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | current memory leak: 313.08 B/s (using 78 data points, chi2=3.05)
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | could have reported an average CPU frequency of 2365 MHz (6 samples)
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | ..............................
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | . Timing measurements:
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | . get job = 0 s
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | . initial setup = 2 s
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | . payload setup = 2 s
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | . stage-in = 0 s
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | . payload execution = 5156 s
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | . stage-out = 0 s
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | . log creation = 0 s
[2026-03-11 15:01:40] 2026-03-11 14:00:43,222 | INFO     | ..............................
[2026-03-11 15:01:40] 2026-03-11 14:00:43,771 | INFO     | 
[2026-03-11 15:01:40] 2026-03-11 14:00:43,771 | INFO     | job summary report
[2026-03-11 15:01:40] 2026-03-11 14:00:43,771 | INFO     | --------------------------------------------------
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | PanDA job id: 7036220084
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | task id: 48851750
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | errors: (none)
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | pilot state: finished 
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | transexitcode: 0
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | exeerrorcode: 0
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | exeerrordiag: 
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | exitcode: 0
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | exitmsg: OK
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | cpuconsumptiontime: 27749 s
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | nevents: 400
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | neventsw: 0
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | pid: 13788
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | pgrp: 13788
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | corecount: 8
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | event service: False
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | sizes: {0: 2280176, 1: 2280438, 11: 2280466, 5162: 2306858, 5163: 2315886, 5164: 2315942, 5166: 2316264}
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | --------------------------------------------------
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | 
[2026-03-11 15:01:40] 2026-03-11 14:00:43,772 | INFO     | executing command: ls -lF /tmp/job_11292494/atlas/pilot/slots/0
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,781 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | job 7036220084 has completed (purged errors)
[2026-03-11 15:01:40] 2026-03-11 14:00:43,782 | INFO     | overall cleanup function is called
[2026-03-11 15:01:40] 2026-03-11 14:00:44,788 | INFO     | --- collectZombieJob: --- 10, [13788]
[2026-03-11 15:01:40] 2026-03-11 14:00:44,788 | INFO     | zombie collector waiting for pid 13788
[2026-03-11 15:01:40] 2026-03-11 14:00:44,788 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 15:01:40] 2026-03-11 14:00:44,788 | INFO     | collected zombie processes
[2026-03-11 15:01:40] 2026-03-11 14:00:44,788 | INFO     | will attempt to kill all subprocesses of pid=13788
[2026-03-11 15:01:40] 2026-03-11 14:00:44,875 | INFO     | process IDs to be killed: [13788] (in reverse order)
[2026-03-11 15:01:40] 2026-03-11 14:00:44,903 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 15:01:40] 2026-03-11 14:00:44,903 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 15:01:40] 2026-03-11 14:00:44,906 | INFO     | did not find any defunct processes belonging to 13788
[2026-03-11 15:01:40] 2026-03-11 14:00:44,909 | INFO     | did not find any defunct processes belonging to 13788
[2026-03-11 15:01:40] 2026-03-11 14:00:44,909 | INFO     | ready for new job
[2026-03-11 15:01:40] 2026-03-11 14:00:44,909 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 15:01:40] 2026-03-11 14:00:44,910 | INFO     | **************************************
[2026-03-11 15:01:40] 2026-03-11 14:00:44,910 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 15:01:40] 2026-03-11 14:00:44,910 | INFO     | **************************************
[2026-03-11 15:01:40] 2026-03-11 14:00:44,910 | INFO     | 
[2026-03-11 15:01:40] 2026-03-11 14:00:44,923 | INFO     | architecture information:
[2026-03-11 15:01:40] 2026-03-11 14:00:44,923 | INFO     | executing command: cat /etc/os-release
[2026-03-11 15:01:40] 2026-03-11 14:00:44,929 | INFO     | cat /etc/os-release:
[2026-03-11 15:01:40] NAME="CentOS Linux"
[2026-03-11 15:01:40] VERSION="7 (Core)"
[2026-03-11 15:01:40] ID="centos"
[2026-03-11 15:01:40] ID_LIKE="rhel fedora"
[2026-03-11 15:01:40] VERSION_ID="7"
[2026-03-11 15:01:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 15:01:40] ANSI_COLOR="0;31"
[2026-03-11 15:01:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 15:01:40] HOME_URL="https://www.centos.org/"
[2026-03-11 15:01:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 15:01:40] 
[2026-03-11 15:01:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 15:01:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 15:01:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 15:01:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 15:01:40] 
[2026-03-11 15:01:40] 2026-03-11 14:00:44,929 | INFO     | **************************************
[2026-03-11 15:01:40] 2026-03-11 14:00:45,432 | INFO     | executing command: df -mP /tmp/job_11292494/atlas/pilot/slots/0
[2026-03-11 15:01:40] 2026-03-11 14:00:45,437 | INFO     | sufficient remaining disk space (227344908288 B)
[2026-03-11 15:01:40] 2026-03-11 14:00:45,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 15:01:40] 2026-03-11 14:00:45,437 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 15:01:40] 2026-03-11 14:00:45,437 | INFO     | update_server=False
[2026-03-11 15:01:40] 2026-03-11 14:00:45,438 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 15:01:40] 2026-03-11 14:00:45,438 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 15:01:40] 2026-03-11 14:00:45,762 | INFO     | all payload control threads have been joined
[2026-03-11 15:01:40] 2026-03-11 14:00:45,919 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-11 15:01:40] 2026-03-11 14:00:45,919 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-11 15:01:40] 2026-03-11 14:00:45,919 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 15:01:40] 2026-03-11 14:00:45,919 | INFO     | will abort loop
[2026-03-11 15:01:40] 2026-03-11 14:00:46,152 | INFO     | all job control threads have been joined
[2026-03-11 15:01:40] 2026-03-11 14:00:46,310 | INFO     | all data control threads have been joined
[2026-03-11 15:01:40] 2026-03-11 14:00:46,443 | INFO     | [job] retrieve thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:46,500 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:46,605 | INFO     | [data] copytool_in thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:46,767 | INFO     | [payload] control thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:46,789 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:46,913 | INFO     | [payload] failed_post thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:46,924 | INFO     | [job] job monitor thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:47,087 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:47,157 | INFO     | [job] control thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:47,315 | INFO     | [data] control thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:47,406 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 15:01:40] 2026-03-11 14:00:47,443 | INFO     | [data] copytool_out thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:47,637 | INFO     | [payload] validate_post thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:47,781 | INFO     | [job] validate thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:48,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 15:01:40] 2026-03-11 14:00:49,284 | INFO     | [job] queue monitor thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:51,412 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:00:55,837 | INFO     | job.realtimelogging is not enabled
[2026-03-11 15:01:40] 2026-03-11 14:00:56,842 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 15:01:40] 2026-03-11 14:01:15,211 | INFO     | PID=7994 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-11 15:01:40] 2026-03-11 14:01:15,211 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 15:01:40] 2026-03-11 14:01:15,211 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 15:01:40] 2026-03-11 14:01:15,211 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 15:01:40] 2026-03-11 14:01:33,537 | INFO     | [monitor] cgroup control has ended
[2026-03-11 15:01:40] 2026-03-11 14:01:34,854 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-11 15:01:40] 2026-03-11 14:01:35,311 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 15:01:40] 2026-03-11 14:01:35,311 | INFO     | [monitor] control thread has ended
[2026-03-11 15:01:40] 2026-03-11 14:01:39,879 | INFO     | all workflow threads have been joined
[2026-03-11 15:01:40] 2026-03-11 14:01:39,879 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 15:01:40] 2026-03-11 14:01:39,879 | INFO     | traces error code: 0
[2026-03-11 15:01:40] 2026-03-11 14:01:39,879 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 15:01:40] 2026-03-11 14:01:39,931 [wrapper] ==== pilot stdout END ====
[2026-03-11 15:01:40] 2026-03-11 14:01:39,932 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 15:01:40] 2026-03-11 14:01:39,933 [wrapper] pilotpid: 7994
[2026-03-11 15:01:40] 2026-03-11 14:01:39,934 [wrapper] Pilot exit status: 0
[2026-03-11 15:01:40] 2026-03-11 14:01:39,938 [wrapper] pandaids: 7036220084
[2026-03-11 15:01:40] 2026-03-11 14:01:39,960 [wrapper] cleanup supervisor_pilot  4344 7995
[2026-03-11 15:01:40] 2026-03-11 14:01:39,961 [wrapper] Test setup, not cleaning
[2026-03-11 15:01:40] 2026-03-11 14:01:39,962 [wrapper] apfmon messages muted
[2026-03-11 15:01:40] 2026-03-11 14:01:39,964 [wrapper] ==== wrapper stdout END ====
[2026-03-11 15:01:40] 2026-03-11 14:01:39,965 [wrapper] ==== wrapper stderr END ====
[2026-03-11 15:01:40]  *** Error codes and diagnostics ***
[2026-03-11 15:01:40]     "exeErrorCode": 0,
[2026-03-11 15:01:40]     "exeErrorDiag": "",
[2026-03-11 15:01:40]     "pilotErrorCode": 0,
[2026-03-11 15:01:40]     "pilotErrorDiag": "",
[2026-03-11 15:01:40]  *** Listing of results directory ***
[2026-03-11 15:01:40] total 446756
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user    584627 Mar  3 08:05 pilot3.tar.gz
[2026-03-11 15:01:40] -rwx------ 1 mf493845 unix-user     36322 Mar  3 08:05 runpilot2-wrapper.sh
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user      5111 Mar  3 08:05 queuedata.json
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user       100 Mar 11 12:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 15:01:40] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 11 12:30 run_atlas
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user       105 Mar 11 12:30 job.xml
[2026-03-11 15:01:40] -rw-r--r-- 2 mf493845 unix-user 250111030 Mar 11 13:34 EVNT.48460885._000003.pool.root.1
[2026-03-11 15:01:40] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 11 13:34 start_atlas.sh
[2026-03-11 15:01:40] drwxrwx--x 2 mf493845 unix-user       100 Mar 11 13:34 shared
[2026-03-11 15:01:40] -rw-r--r-- 2 mf493845 unix-user    597959 Mar 11 13:34 input.tar.gz
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user      6390 Mar 11 13:34 init_data.xml
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user         0 Mar 11 13:34 boinc_setup_complete
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user      8192 Mar 11 13:34 boinc_mmap_file
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user         0 Mar 11 13:34 boinc_lockfile
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user      2621 Mar 11 13:34 pandaJob.out
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user   1007002 Mar 11 13:34 agis_schedconf.cvmfs.json
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user   1511578 Mar 11 13:34 agis_ddmendpoints.agis.ALL.json
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user       416 Mar 11 13:34 workernode_map.json
[2026-03-11 15:01:40] drwx------ 5 mf493845 unix-user       440 Mar 11 13:34 pilot3
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user 201256578 Mar 11 15:00 HITS.48851750._000055.pool.root.1
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user        95 Mar 11 15:00 pilot_heartbeat.json
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user      1021 Mar 11 15:00 memory_monitor_summary.json
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user    320772 Mar 11 15:00 log.48851750._000055.job.log.tgz.1
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user      6315 Mar 11 15:00 heartbeat.json
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user      5013 Mar 11 15:01 pilotlog.txt
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user    778653 Mar 11 15:01 log.48851750._000055.job.log.1
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user       357 Mar 11 15:01 output.list
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user       620 Mar 11 15:01 runtime_log
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user   1116160 Mar 11 15:01 result.tar.gz
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user      9219 Mar 11 15:01 runtime_log.err
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user       643 Mar 11 15:01 JKwKDmrzYH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmatFLDmMTqOQm.diag
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user     21872 Mar 11 15:01 stderr.txt
[2026-03-11 15:01:40] HITS file was successfully produced:
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user 201256578 Mar 11 15:00 shared/HITS.pool.root.1
[2026-03-11 15:01:40]  *** Contents of shared directory: ***
[2026-03-11 15:01:40] total 442484
[2026-03-11 15:01:40] -rw-r--r-- 2 mf493845 unix-user 250111030 Mar 11 13:34 ATLAS.root_0
[2026-03-11 15:01:40] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 11 13:34 start_atlas.sh
[2026-03-11 15:01:40] -rw-r--r-- 2 mf493845 unix-user    597959 Mar 11 13:34 input.tar.gz
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user 201256578 Mar 11 15:00 HITS.pool.root.1
[2026-03-11 15:01:40] -rw------- 1 mf493845 unix-user   1116160 Mar 11 15:01 result.tar.gz
15:01:41 (3052): run_atlas exited; CPU time 27829.588168
15:01:41 (3052): called boinc_finish(0)

</stderr_txt>
]]>

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