Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:31:48 (24554): wrapper (7.7.26015): starting
13:31:48 (24554): wrapper: running run_atlas (--nthreads 8)
[2026-03-11 13:31:48] Arguments: --nthreads 8
[2026-03-11 13:31:48] Threads: 8
[2026-03-11 13:31:48] Checking for CVMFS
[2026-03-11 13:31:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 13:31:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 13:31:48] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 13:31:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 13:31:48] 2.11.0.0 6164 10054 53664 157153 2 186 2599778 4096000 1099 130560 0 221586 99.347 485631 243 http://cernvmfs.gridpp.rl.ac.uk/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-11 13:31:48] CVMFS is ok
[2026-03-11 13:31:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 13:31:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 13:31:48] Further information can be found at the LHC@home message board.
[2026-03-11 13:31:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 13:31:48] Checking for apptainer binary...
[2026-03-11 13:31:48] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-11 13:31:48] apptainer is not installed, using version from CVMFS
[2026-03-11 13:31:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 13:31:48] WARNING: Environment variable TMPDIR already has value [/tmp/job_11292536/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node200
[2026-03-11 13:31:48] apptainer works
[2026-03-11 13:31:48] Set ATHENA_PROC_NUMBER=8
[2026-03-11 13:31:48] Set ATHENA_CORE_NUMBER=8
[2026-03-11 13:31:48] Starting ATLAS job with PandaID=7036207128
[2026-03-11 13:31:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11292536/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 15:20:10]  *** The last 200 lines of the pilot log: ***
[2026-03-11 15:20:10] 2026-03-11 14:19:15,117 | INFO     | mean x: 1773235991.0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,117 | INFO     | mean y: 2263250.604395604
[2026-03-11 15:20:10] 2026-03-11 14:19:15,117 | INFO     | intersect: -368343342354.8599
[2026-03-11 15:20:10] 2026-03-11 14:19:15,117 | INFO     | chi2: 4.244952051681502
[2026-03-11 15:20:10] 2026-03-11 14:19:15,117 | INFO     | current chi2=4.244952051681502 (change=40.0136290065754 %)
[2026-03-11 15:20:10] 2026-03-11 14:19:15,117 | INFO     | sum of square deviations: 197203697.5
[2026-03-11 15:20:10] 2026-03-11 14:19:15,117 | INFO     | sum of deviations: 28560737013.499992
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | mean x: 1773236143.5
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | mean y: 2346950.6627906975
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | intersect: -256812975476.72952
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | chi2: 2.5848349974818485
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | current chi2=2.5848349974818485 (change=39.108028406164244 %)
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | sum of square deviations: 164765880.0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | sum of deviations: 12901204271.999998
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | mean x: 1773236296.0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | mean y: 2420494.3333333335
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | intersect: -138842367499.51984
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | chi2: 1.4942606082070367
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | current chi2=1.4942606082070367 (change=42.19125748209273 %)
[2026-03-11 15:20:10] 2026-03-11 14:19:15,118 | INFO     | sum of square deviations: 136095575.0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | sum of deviations: 1460688462.500001
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | mean x: 1773236448.5
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | mean y: 2481134.513157895
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | intersect: -19029335451.79707
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | chi2: 0.8324800650755713
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | current chi2=0.8324800650755713 (change=44.28816094707441 %)
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | sum of square deviations: 110960220.0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | sum of deviations: -2541310507.999999
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | mean x: 1773236601.0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | mean y: 2504973.0422535213
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | intersect: 40614760493.90821
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | chi2: 0.7213410079019041
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | current chi2=0.7213410079019041 (change=13.350356583443002 %)
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | left removable region: 70
[2026-03-11 15:20:10] 2026-03-11 14:19:15,119 | INFO     | sum of square deviations: 8362947.5
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | sum of deviations: 400619970.5
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | mean x: 1773237485.5
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | mean y: 2549140.033333333
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | intersect: -84942902105.53578
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | chi2: 0.0009508000749412928
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | current memory leak: 47.90 B/s (using 30 data points, chi2=0.00)
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | could have reported an average CPU frequency of 2380 MHz (7 samples)
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | ..............................
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | . Timing measurements:
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | . get job = 0 s
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | . initial setup = 2 s
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | . payload setup = 2 s
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | . stage-in = 0 s
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | . payload execution = 6419 s
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | . stage-out = 0 s
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | . log creation = 0 s
[2026-03-11 15:20:10] 2026-03-11 14:19:15,120 | INFO     | ..............................
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | 
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | job summary report
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | --------------------------------------------------
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | PanDA job id: 7036207128
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | task id: 48851779
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | errors: (none)
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | pilot state: finished 
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | transexitcode: 0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | exeerrorcode: 0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | exeerrordiag: 
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | exitcode: 0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | exitmsg: OK
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | cpuconsumptiontime: 33683 s
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | nevents: 400
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | neventsw: 0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | pid: 2997
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | pgrp: 2997
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | corecount: 8
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | event service: False
[2026-03-11 15:20:10] 2026-03-11 14:19:15,168 | INFO     | sizes: {0: 2280159, 1: 2280421, 11: 2280449, 6424: 2307512, 6425: 2316540, 6426: 2316596, 6429: 2316918}
[2026-03-11 15:20:10] 2026-03-11 14:19:15,169 | INFO     | --------------------------------------------------
[2026-03-11 15:20:10] 2026-03-11 14:19:15,169 | INFO     | 
[2026-03-11 15:20:10] 2026-03-11 14:19:15,169 | INFO     | executing command: ls -lF /tmp/job_11292536/atlas/pilot/slots/0
[2026-03-11 15:20:10] 2026-03-11 14:19:15,177 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,177 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,177 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | job 7036207128 has completed (purged errors)
[2026-03-11 15:20:10] 2026-03-11 14:19:15,178 | INFO     | overall cleanup function is called
[2026-03-11 15:20:10] 2026-03-11 14:19:16,184 | INFO     | --- collectZombieJob: --- 10, [2997]
[2026-03-11 15:20:10] 2026-03-11 14:19:16,184 | INFO     | zombie collector waiting for pid 2997
[2026-03-11 15:20:10] 2026-03-11 14:19:16,184 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 15:20:10] 2026-03-11 14:19:16,184 | INFO     | collected zombie processes
[2026-03-11 15:20:10] 2026-03-11 14:19:16,184 | INFO     | will attempt to kill all subprocesses of pid=2997
[2026-03-11 15:20:10] 2026-03-11 14:19:16,275 | INFO     | process IDs to be killed: [2997] (in reverse order)
[2026-03-11 15:20:10] 2026-03-11 14:19:16,304 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 15:20:10] 2026-03-11 14:19:16,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 15:20:10] 2026-03-11 14:19:16,309 | INFO     | did not find any defunct processes belonging to 2997
[2026-03-11 15:20:10] 2026-03-11 14:19:16,313 | INFO     | did not find any defunct processes belonging to 2997
[2026-03-11 15:20:10] 2026-03-11 14:19:16,313 | INFO     | ready for new job
[2026-03-11 15:20:10] 2026-03-11 14:19:16,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 15:20:10] 2026-03-11 14:19:16,314 | INFO     | **************************************
[2026-03-11 15:20:10] 2026-03-11 14:19:16,314 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 15:20:10] 2026-03-11 14:19:16,314 | INFO     | **************************************
[2026-03-11 15:20:10] 2026-03-11 14:19:16,314 | INFO     | 
[2026-03-11 15:20:10] 2026-03-11 14:19:16,330 | INFO     | architecture information:
[2026-03-11 15:20:10] 2026-03-11 14:19:16,330 | INFO     | executing command: cat /etc/os-release
[2026-03-11 15:20:10] 2026-03-11 14:19:16,336 | INFO     | cat /etc/os-release:
[2026-03-11 15:20:10] NAME="CentOS Linux"
[2026-03-11 15:20:10] VERSION="7 (Core)"
[2026-03-11 15:20:10] ID="centos"
[2026-03-11 15:20:10] ID_LIKE="rhel fedora"
[2026-03-11 15:20:10] VERSION_ID="7"
[2026-03-11 15:20:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 15:20:10] ANSI_COLOR="0;31"
[2026-03-11 15:20:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 15:20:10] HOME_URL="https://www.centos.org/"
[2026-03-11 15:20:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 15:20:10] 
[2026-03-11 15:20:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 15:20:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 15:20:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 15:20:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 15:20:10] 
[2026-03-11 15:20:10] 2026-03-11 14:19:16,336 | INFO     | **************************************
[2026-03-11 15:20:10] 2026-03-11 14:19:16,370 | WARNING  | process 2997 can no longer be monitored (due to stat problems) - aborting
[2026-03-11 15:20:10] 2026-03-11 14:19:16,440 | INFO     | using path: /tmp/job_11292536/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 15:20:10] 2026-03-11 14:19:16,441 | INFO     | using path: /tmp/job_11292536/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 15:20:10] 2026-03-11 14:19:16,441 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-11 15:20:10] 2026-03-11 14:19:16,441 | WARNING  | maxPSS not found in memory monitor output
[2026-03-11 15:20:10] 2026-03-11 14:19:16,441 | INFO     | skipping file size check of payload stdout file (/tmp/job_11292536/atlas/pilot/slots/0/PanDA_Pilot-7036207128/payload.stdout) since it has not been created yet
[2026-03-11 15:20:10] 2026-03-11 14:19:16,441 | INFO     | executing command: df -mP /tmp/job_11292536/atlas/pilot/slots/0
[2026-03-11 15:20:10] 2026-03-11 14:19:16,448 | INFO     | sufficient remaining disk space (227306110976 B)
[2026-03-11 15:20:10] 2026-03-11 14:19:16,448 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-11 15:20:10] 2026-03-11 14:19:16,448 | INFO     | output file size check: skipping output file /tmp/job_11292536/atlas/pilot/slots/0/PanDA_Pilot-7036207128/HITS.48851779._000015.pool.root.1 since it does not exist
[2026-03-11 15:20:10] 2026-03-11 14:19:16,532 | INFO     | number of running child processes to parent process 2997: 1
[2026-03-11 15:20:10] 2026-03-11 14:19:16,532 | INFO     | maximum number of monitored processes: 7
[2026-03-11 15:20:10] 2026-03-11 14:19:16,532 | INFO     | aborting job monitoring since job object (job id=7036207128) has expired
[2026-03-11 15:20:10] 2026-03-11 14:19:16,838 | INFO     | executing command: df -mP /tmp/job_11292536/atlas/pilot/slots/0
[2026-03-11 15:20:10] 2026-03-11 14:19:16,844 | INFO     | sufficient remaining disk space (227306110976 B)
[2026-03-11 15:20:10] 2026-03-11 14:19:16,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 15:20:10] 2026-03-11 14:19:16,845 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 15:20:10] 2026-03-11 14:19:16,845 | INFO     | update_server=False
[2026-03-11 15:20:10] 2026-03-11 14:19:16,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 15:20:10] 2026-03-11 14:19:16,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 15:20:10] 2026-03-11 14:19:16,845 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 15:20:10] 2026-03-11 14:19:16,845 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 15:20:10] 2026-03-11 14:19:16,845 | INFO     | will abort loop
[2026-03-11 15:20:10] 2026-03-11 14:19:16,946 | INFO     | all data control threads have been joined
[2026-03-11 15:20:10] 2026-03-11 14:19:17,413 | INFO     | all payload control threads have been joined
[2026-03-11 15:20:10] 2026-03-11 14:19:17,754 | INFO     | all job control threads have been joined
[2026-03-11 15:20:10] 2026-03-11 14:19:17,850 | INFO     | [job] retrieve thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:17,850 | INFO     | [job] queue monitor thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:17,850 | INFO     | [job] job monitor thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:17,951 | INFO     | [data] control thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:18,115 | INFO     | [payload] validate_post thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:18,418 | INFO     | [payload] control thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:18,497 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 15:20:10] 2026-03-11 14:19:18,682 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:18,692 | INFO     | [job] validate thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:18,692 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:18,759 | INFO     | [job] control thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:18,850 | INFO     | [data] copytool_out thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:18,917 | INFO     | [data] copytool_in thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:18,986 | INFO     | [payload] failed_post thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:19,137 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:22,502 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:27,354 | INFO     | job.realtimelogging is not enabled
[2026-03-11 15:20:10] 2026-03-11 14:19:28,359 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 15:20:10] 2026-03-11 14:19:47,230 | INFO     | PID=29353 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-11 15:20:10] 2026-03-11 14:19:47,230 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 15:20:10] 2026-03-11 14:19:47,230 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 15:20:10] 2026-03-11 14:19:47,230 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 15:20:10] 2026-03-11 14:20:03,924 | INFO     | [monitor] cgroup control has ended
[2026-03-11 15:20:10] 2026-03-11 14:20:04,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-11 15:20:10] 2026-03-11 14:20:05,315 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 15:20:10] 2026-03-11 14:20:05,316 | INFO     | [monitor] control thread has ended
[2026-03-11 15:20:10] 2026-03-11 14:20:09,954 | INFO     | all workflow threads have been joined
[2026-03-11 15:20:10] 2026-03-11 14:20:09,955 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 15:20:10] 2026-03-11 14:20:09,955 | INFO     | traces error code: 0
[2026-03-11 15:20:10] 2026-03-11 14:20:09,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 15:20:10] 2026-03-11 14:20:10,008 [wrapper] ==== pilot stdout END ====
[2026-03-11 15:20:10] 2026-03-11 14:20:10,009 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 15:20:10] 2026-03-11 14:20:10,010 [wrapper] pilotpid: 29353
[2026-03-11 15:20:10] 2026-03-11 14:20:10,011 [wrapper] Pilot exit status: 0
[2026-03-11 15:20:10] 2026-03-11 14:20:10,016 [wrapper] pandaids: 7036207128
[2026-03-11 15:20:10] 2026-03-11 14:20:10,037 [wrapper] cleanup supervisor_pilot  4189 29354
[2026-03-11 15:20:10] 2026-03-11 14:20:10,038 [wrapper] Test setup, not cleaning
[2026-03-11 15:20:10] 2026-03-11 14:20:10,039 [wrapper] apfmon messages muted
[2026-03-11 15:20:10] 2026-03-11 14:20:10,040 [wrapper] ==== wrapper stdout END ====
[2026-03-11 15:20:10] 2026-03-11 14:20:10,042 [wrapper] ==== wrapper stderr END ====
[2026-03-11 15:20:10]  *** Error codes and diagnostics ***
[2026-03-11 15:20:10]     "exeErrorCode": 0,
[2026-03-11 15:20:10]     "exeErrorDiag": "",
[2026-03-11 15:20:10]     "pilotErrorCode": 0,
[2026-03-11 15:20:10]     "pilotErrorDiag": "",
[2026-03-11 15:20:10]  *** Listing of results directory ***
[2026-03-11 15:20:10] total 424384
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user    584627 Mar  3 05:44 pilot3.tar.gz
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user      5111 Mar  3 06:00 queuedata.json
[2026-03-11 15:20:10] -rwx------ 1 mf493845 unix-user     36322 Mar  3 06:01 runpilot2-wrapper.sh
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user       100 Mar 11 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 15:20:10] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 11 12:31 run_atlas
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user       105 Mar 11 12:31 job.xml
[2026-03-11 15:20:10] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 11 13:31 start_atlas.sh
[2026-03-11 15:20:10] drwxrwx--x 2 mf493845 unix-user       100 Mar 11 13:31 shared
[2026-03-11 15:20:10] -rw-r--r-- 2 mf493845 unix-user    597957 Mar 11 13:31 input.tar.gz
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user      6391 Mar 11 13:31 init_data.xml
[2026-03-11 15:20:10] -rw-r--r-- 2 mf493845 unix-user 235563406 Mar 11 13:31 EVNT.48460985._000001.pool.root.1
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user         0 Mar 11 13:31 boinc_setup_complete
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user      8192 Mar 11 13:31 boinc_mmap_file
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user         0 Mar 11 13:31 boinc_lockfile
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user      2603 Mar 11 13:31 pandaJob.out
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user   1007002 Mar 11 13:31 agis_schedconf.cvmfs.json
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user   1511578 Mar 11 13:31 agis_ddmendpoints.agis.ALL.json
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user       412 Mar 11 13:31 workernode_map.json
[2026-03-11 15:20:10] drwx------ 5 mf493845 unix-user       440 Mar 11 13:31 pilot3
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user 192485945 Mar 11 15:18 HITS.48851779._000015.pool.root.1
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user      1021 Mar 11 15:19 memory_monitor_summary.json
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user    350145 Mar 11 15:19 log.48851779._000015.job.log.tgz.1
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user        95 Mar 11 15:19 pilot_heartbeat.json
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user      6304 Mar 11 15:19 heartbeat.json
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user      6383 Mar 11 15:20 pilotlog.txt
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user    955476 Mar 11 15:20 log.48851779._000015.job.log.1
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user       357 Mar 11 15:20 output.list
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user       620 Mar 11 15:20 runtime_log
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user   1320960 Mar 11 15:20 result.tar.gz
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user      9219 Mar 11 15:20 runtime_log.err
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user       645 Mar 11 15:20 iUqKDmT4WH9n9Rq4apOajLDm4fhM0noT9bVooX4SDm3kDLDmfWRm0n.diag
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user     21961 Mar 11 15:20 stderr.txt
[2026-03-11 15:20:10] HITS file was successfully produced:
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user 192485945 Mar 11 15:18 shared/HITS.pool.root.1
[2026-03-11 15:20:10]  *** Contents of shared directory: ***
[2026-03-11 15:20:10] total 419912
[2026-03-11 15:20:10] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 11 13:31 start_atlas.sh
[2026-03-11 15:20:10] -rw-r--r-- 2 mf493845 unix-user    597957 Mar 11 13:31 input.tar.gz
[2026-03-11 15:20:10] -rw-r--r-- 2 mf493845 unix-user 235563406 Mar 11 13:31 ATLAS.root_0
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user 192485945 Mar 11 15:18 HITS.pool.root.1
[2026-03-11 15:20:10] -rw------- 1 mf493845 unix-user   1320960 Mar 11 15:20 result.tar.gz
15:20:11 (24554): run_atlas exited; CPU time 33781.320361
15:20:11 (24554): called boinc_finish(0)

</stderr_txt>
]]>

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