Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:59:02 (359424): wrapper (7.7.26015): starting
02:59:02 (359424): wrapper: running run_atlas (--nthreads 2)
[2026-03-12 02:59:02] Arguments: --nthreads 2
[2026-03-12 02:59:02] Threads: 2
[2026-03-12 02:59:02] Checking for CVMFS
[2026-03-12 02:59:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 02:59:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 02:59:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 02:59:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 02:59:19] 2.9.2.0 2856 3515 56624 157178 3 50 27664621 36864001 0 130560 0 1054058 99.974 135098 14841 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 02:59:19] CVMFS is ok
[2026-03-12 02:59:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 02:59:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 02:59:19] Further information can be found at the LHC@home message board.
[2026-03-12 02:59:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 02:59:19] Checking for apptainer binary...
[2026-03-12 02:59:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 02:59:19] Running /usr/bin/apptainer --version
[2026-03-12 02:59:19] apptainer version 1.4.1-1.1
[2026-03-12 02:59:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 02:59:19] thA337
[2026-03-12 02:59:19] apptainer works
[2026-03-12 02:59:19] Set ATHENA_PROC_NUMBER=2
[2026-03-12 02:59:19] Set ATHENA_CORE_NUMBER=2
[2026-03-12 02:59:19] Starting ATLAS job with PandaID=7049711052
[2026-03-12 02:59:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 05:29:14]  *** The last 200 lines of the pilot log: ***
[2026-03-12 05:29:14] 2026-03-12 04:28:15,591 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 05:29:14] 2026-03-12 04:28:15,591 | INFO     | collected zombie processes
[2026-03-12 05:29:14] 2026-03-12 04:28:15,591 | INFO     | will attempt to kill all subprocesses of pid=367880
[2026-03-12 05:29:14] 2026-03-12 04:28:15,622 | INFO     | process IDs to be killed: [367880] (in reverse order)
[2026-03-12 05:29:14] 2026-03-12 04:28:15,643 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 05:29:14] 2026-03-12 04:28:15,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 05:29:14] 2026-03-12 04:28:15,644 | INFO     | did not find any defunct processes belonging to 367880
[2026-03-12 05:29:14] 2026-03-12 04:28:15,644 | INFO     | did not find any defunct processes belonging to 367880
[2026-03-12 05:29:14] 2026-03-12 04:28:15,644 | INFO     | ready for new job
[2026-03-12 05:29:14] 2026-03-12 04:28:15,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 05:29:14] 2026-03-12 04:28:15,645 | INFO     | **************************************
[2026-03-12 05:29:14] 2026-03-12 04:28:15,645 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 05:29:14] 2026-03-12 04:28:15,645 | INFO     | **************************************
[2026-03-12 05:29:14] 2026-03-12 04:28:15,645 | INFO     | 
[2026-03-12 05:29:14] 2026-03-12 04:28:15,645 | INFO     | architecture information:
[2026-03-12 05:29:14] 2026-03-12 04:28:15,645 | INFO     | executing command: cat /etc/os-release
[2026-03-12 05:29:14] 2026-03-12 04:28:15,654 | INFO     | cat /etc/os-release:
[2026-03-12 05:29:14] NAME="CentOS Linux"
[2026-03-12 05:29:14] VERSION="7 (Core)"
[2026-03-12 05:29:14] ID="centos"
[2026-03-12 05:29:14] ID_LIKE="rhel fedora"
[2026-03-12 05:29:14] VERSION_ID="7"
[2026-03-12 05:29:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 05:29:14] ANSI_COLOR="0;31"
[2026-03-12 05:29:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 05:29:14] HOME_URL="https://www.centos.org/"
[2026-03-12 05:29:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 05:29:14] 
[2026-03-12 05:29:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 05:29:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 05:29:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 05:29:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 05:29:14] 
[2026-03-12 05:29:14] 2026-03-12 04:28:15,654 | INFO     | **************************************
[2026-03-12 05:29:14] 2026-03-12 04:28:16,156 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 05:29:14] 2026-03-12 04:28:16,169 | INFO     | sufficient remaining disk space (483371515904 B)
[2026-03-12 05:29:14] 2026-03-12 04:28:16,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 05:29:14] 2026-03-12 04:28:16,169 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 05:29:14] 2026-03-12 04:28:16,169 | INFO     | update_server=False
[2026-03-12 05:29:14] 2026-03-12 04:28:16,169 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 05:29:14] 2026-03-12 04:28:16,169 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 05:29:14] 2026-03-12 04:28:16,170 | INFO     | aborting loop
[2026-03-12 05:29:14] 2026-03-12 04:28:16,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 05:29:14] 2026-03-12 04:28:16,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 05:29:14] 2026-03-12 04:28:16,398 | INFO     | all job control threads have been joined
[2026-03-12 05:29:14] 2026-03-12 04:28:16,826 | INFO     | all data control threads have been joined
[2026-03-12 05:29:14] 2026-03-12 04:28:16,840 | INFO     | all payload control threads have been joined
[2026-03-12 05:29:14] 2026-03-12 04:28:17,171 | INFO     | [job] retrieve thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:17,175 | INFO     | [job] job monitor thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:17,176 | INFO     | [job] queue monitor thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:17,239 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:17,405 | INFO     | [job] control thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:17,457 | INFO     | [data] copytool_in thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:17,482 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:17,499 | INFO     | [payload] failed_post thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:17,832 | INFO     | [data] control thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:17,846 | INFO     | [payload] control thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:17,964 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 05:29:14] 2026-03-12 04:28:17,993 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:18,176 | INFO     | [data] copytool_out thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:18,522 | INFO     | [payload] validate_post thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:18,655 | INFO     | [job] validate thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:21,968 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:26,393 | INFO     | job.realtimelogging is not enabled
[2026-03-12 05:29:14] 2026-03-12 04:28:27,399 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 05:29:14] 2026-03-12 04:28:47,055 | INFO     | PID=363450 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 05:29:14] 2026-03-12 04:28:47,055 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 05:29:14] 2026-03-12 04:28:47,055 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 05:29:14] 2026-03-12 04:28:47,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 05:29:14] 2026-03-12 04:29:08,729 | INFO     | [monitor] cgroup control has ended
[2026-03-12 05:29:14] 2026-03-12 04:29:09,759 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140532530284352)>', '<ExcThread(monitor, started 140532042942208)>']
[2026-03-12 05:29:14] 2026-03-12 04:29:10,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 05:29:14] 2026-03-12 04:29:10,169 | INFO     | [monitor] control thread has ended
[2026-03-12 05:29:14] 2026-03-12 04:29:14,785 | INFO     | all workflow threads have been joined
[2026-03-12 05:29:14] 2026-03-12 04:29:14,785 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 05:29:14] 2026-03-12 04:29:14,786 | INFO     | traces error code: 0
[2026-03-12 05:29:14] 2026-03-12 04:29:14,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 05:29:14] 2026-03-12 04:29:14,828 [wrapper] ==== pilot stdout END ====
[2026-03-12 05:29:14] 2026-03-12 04:29:14,830 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 05:29:14] 2026-03-12 04:29:14,832 [wrapper] pilotpid: 363450
[2026-03-12 05:29:14] 2026-03-12 04:29:14,835 [wrapper] Pilot exit status: 0
[2026-03-12 05:29:14] 2026-03-12 04:29:14,841 [wrapper] pandaids: 7049711052
[2026-03-12 05:29:14] 2026-03-12 04:29:14,854 [wrapper] cleanup supervisor_pilot  373001 363451
[2026-03-12 05:29:14] 2026-03-12 04:29:14,856 [wrapper] Test setup, not cleaning
[2026-03-12 05:29:14] 2026-03-12 04:29:14,858 [wrapper] apfmon messages muted
[2026-03-12 05:29:14] 2026-03-12 04:29:14,861 [wrapper] ==== wrapper stdout END ====
[2026-03-12 05:29:14] 2026-03-12 04:29:14,863 [wrapper] ==== wrapper stderr END ====
[2026-03-12 05:29:14]  *** Error codes and diagnostics ***
[2026-03-12 05:29:14]     "exeErrorCode": 0,
[2026-03-12 05:29:14]     "exeErrorDiag": "",
[2026-03-12 05:29:14]     "pilotErrorCode": 0,
[2026-03-12 05:29:14]     "pilotErrorDiag": "",
[2026-03-12 05:29:14]  *** Listing of results directory ***
[2026-03-12 05:29:14] total 407484
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc    585013 Mar 11 10:02 pilot3.tar.gz
[2026-03-12 05:29:14] -rwx------ 1 boinc boinc     36322 Mar 11 10:39 runpilot2-wrapper.sh
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc      5111 Mar 11 10:40 queuedata.json
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc       100 Mar 12 02:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 05:29:14] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 02:59 run_atlas
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc       105 Mar 12 02:59 job.xml
[2026-03-12 05:29:14] -rw-r--r-- 2 boinc boinc 211991057 Mar 12 02:59 EVNT.48967083._000374.pool.root.1
[2026-03-12 05:29:14] -rw-r--r-- 2 boinc boinc    597521 Mar 12 02:59 input.tar.gz
[2026-03-12 05:29:14] -rw-r--r-- 2 boinc boinc     15845 Mar 12 02:59 start_atlas.sh
[2026-03-12 05:29:14] drwxrwx--x 2 boinc boinc      4096 Mar 12 02:59 shared
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc         0 Mar 12 02:59 boinc_setup_complete
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc      6205 Mar 12 02:59 init_data.xml
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc         0 Mar 12 02:59 boinc_lockfile
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc      2558 Mar 12 02:59 pandaJob.out
[2026-03-12 05:29:14] -rw------- 1 boinc boinc   1006235 Mar 12 02:59 agis_schedconf.cvmfs.json
[2026-03-12 05:29:14] -rw------- 1 boinc boinc   1511578 Mar 12 02:59 agis_ddmendpoints.agis.ALL.json
[2026-03-12 05:29:14] -rw------- 1 boinc boinc       425 Mar 12 02:59 workernode_map.json
[2026-03-12 05:29:14] drwx------ 5 boinc boinc      4096 Mar 12 02:59 pilot3
[2026-03-12 05:29:14] -rw------- 1 boinc boinc 198247042 Mar 12 05:27 HITS.48967085._009259.pool.root.1
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc       529 Mar 12 05:27 boinc_task_state.xml
[2026-03-12 05:29:14] -rw------- 1 boinc boinc      1025 Mar 12 05:28 memory_monitor_summary.json
[2026-03-12 05:29:14] -rw------- 1 boinc boinc    278748 Mar 12 05:28 log.48967085._009259.job.log.tgz.1
[2026-03-12 05:29:14] -rw------- 1 boinc boinc      6293 Mar 12 05:28 heartbeat.json
[2026-03-12 05:29:14] -rw------- 1 boinc boinc        95 Mar 12 05:28 pilot_heartbeat.json
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc      8192 Mar 12 05:28 boinc_mmap_file
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc        27 Mar 12 05:28 wrapper_checkpoint.txt
[2026-03-12 05:29:14] -rw------- 1 boinc boinc      4819 Mar 12 05:29 pilotlog.txt
[2026-03-12 05:29:14] -rw------- 1 boinc boinc   1269798 Mar 12 05:29 log.48967085._009259.job.log.1
[2026-03-12 05:29:14] -rw------- 1 boinc boinc       357 Mar 12 05:29 output.list
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc       620 Mar 12 05:29 runtime_log
[2026-03-12 05:29:14] -rw------- 1 boinc boinc   1566720 Mar 12 05:29 result.tar.gz
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc      8896 Mar 12 05:29 runtime_log.err
[2026-03-12 05:29:14] -rw------- 1 boinc boinc       657 Mar 12 05:29 9jDNDmUDVK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmhPgLDmhSEffm.diag
[2026-03-12 05:29:14] -rw-r--r-- 1 boinc boinc     10495 Mar 12 05:29 stderr.txt
[2026-03-12 05:29:14] HITS file was successfully produced:
[2026-03-12 05:29:14] -rw------- 1 boinc boinc 198247042 Mar 12 05:27 shared/HITS.pool.root.1
[2026-03-12 05:29:14]  *** Contents of shared directory: ***
[2026-03-12 05:29:14] total 402764
[2026-03-12 05:29:14] -rw-r--r-- 2 boinc boinc 211991057 Mar 12 02:59 ATLAS.root_0
[2026-03-12 05:29:14] -rw-r--r-- 2 boinc boinc    597521 Mar 12 02:59 input.tar.gz
[2026-03-12 05:29:14] -rw-r--r-- 2 boinc boinc     15845 Mar 12 02:59 start_atlas.sh
[2026-03-12 05:29:14] -rw------- 1 boinc boinc 198247042 Mar 12 05:27 HITS.pool.root.1
[2026-03-12 05:29:14] -rw------- 1 boinc boinc   1566720 Mar 12 05:29 result.tar.gz
05:29:16 (359424): run_atlas exited; CPU time 17320.223585
05:29:16 (359424): called boinc_finish(0)

</stderr_txt>
]]>

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