Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:32:29 (2299072): wrapper (7.7.26015): starting
05:32:29 (2299072): wrapper: running run_atlas (--nthreads 9)
[2026-03-11 05:32:29] Arguments: --nthreads 9
[2026-03-11 05:32:29] Threads: 9
[2026-03-11 05:32:29] Checking for CVMFS
[2026-03-11 05:32:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 05:32:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 05:32:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 05:32:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 05:32:31] 2.13.3.0 2091969 49729 343004 157149 2 291 19553662 32935936 36993 16776704 0 114894270 99.533 148796549 32277 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-11 05:32:31] CVMFS is ok
[2026-03-11 05:32:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 05:32:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 05:32:31] Further information can be found at the LHC@home message board.
[2026-03-11 05:32:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 05:32:31] Checking for apptainer binary...
[2026-03-11 05:32:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-11 05:32:31] Running /usr/bin/apptainer --version
[2026-03-11 05:32:31] apptainer version 1.4.5-2.el9
[2026-03-11 05:32:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 05:32:31] c6-12-27-2.aglt2.org
[2026-03-11 05:32:31] apptainer works
[2026-03-11 05:32:31] Set ATHENA_PROC_NUMBER=9
[2026-03-11 05:32:31] Set ATHENA_CORE_NUMBER=9
[2026-03-11 05:32:31] Starting ATLAS job with PandaID=7036206656
[2026-03-11 05:32:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 10:10:17]  *** The last 200 lines of the pilot log: ***
[2026-03-11 10:10:17] 2026-03-11 14:09:40,238 | INFO     | intersect: -9448309401.6233
[2026-03-11 10:10:17] 2026-03-11 14:09:40,239 | INFO     | chi2: 2.537805314002999
[2026-03-11 10:10:17] 2026-03-11 14:09:40,239 | INFO     | sum of square deviations: 5836284936.048872
[2026-03-11 10:10:17] 2026-03-11 14:09:40,253 | INFO     | sum of deviations: 49635201972.85342
[2026-03-11 10:10:17] 2026-03-11 14:09:40,253 | INFO     | mean x: 1773229751.8383458
[2026-03-11 10:10:17] 2026-03-11 14:09:40,253 | INFO     | mean y: 2578472.484962406
[2026-03-11 10:10:17] 2026-03-11 14:09:40,253 | INFO     | intersect: -15078010950.613762
[2026-03-11 10:10:17] 2026-03-11 14:09:40,254 | INFO     | chi2: 1.8523228176663515
[2026-03-11 10:10:17] 2026-03-11 14:09:40,254 | INFO     | current chi2=1.8523228176663515 (change=27.010838560165347 %)
[2026-03-11 10:10:17] 2026-03-11 14:09:40,257 | INFO     | sum of square deviations: 5513228272.237547
[2026-03-11 10:10:17] 2026-03-11 14:09:40,260 | INFO     | sum of deviations: 48414416654.19922
[2026-03-11 10:10:17] 2026-03-11 14:09:40,261 | INFO     | mean x: 1773229599.3141763
[2026-03-11 10:10:17] 2026-03-11 14:09:40,261 | INFO     | mean y: 2577895.9731800766
[2026-03-11 10:10:17] 2026-03-11 14:09:40,262 | INFO     | intersect: -15569038660.71132
[2026-03-11 10:10:17] 2026-03-11 14:09:40,262 | INFO     | chi2: 1.8531720314611213
[2026-03-11 10:10:17] 2026-03-11 14:09:40,262 | INFO     | current chi2=1.8531720314611213 (change=-0.04584588532141752 %)
[2026-03-11 10:10:17] 2026-03-11 14:09:40,262 | INFO     | right removable region: 260
[2026-03-11 10:10:17] 2026-03-11 14:09:40,263 | INFO     | sum of square deviations: 5836261878.68042
[2026-03-11 10:10:17] 2026-03-11 14:09:40,264 | INFO     | sum of deviations: -21458497800.030083
[2026-03-11 10:10:17] 2026-03-11 14:09:40,267 | INFO     | mean x: 1773230056.8458648
[2026-03-11 10:10:17] 2026-03-11 14:09:40,267 | INFO     | mean y: 2595554.6090225563
[2026-03-11 10:10:17] 2026-03-11 14:09:40,268 | INFO     | intersect: 6522325831.410363
[2026-03-11 10:10:17] 2026-03-11 14:09:40,269 | INFO     | chi2: 0.7618020943378381
[2026-03-11 10:10:17] 2026-03-11 14:09:40,270 | INFO     | current chi2=0.7618020943378381 (change=69.98185439464574 %)
[2026-03-11 10:10:17] 2026-03-11 14:09:40,272 | INFO     | sum of square deviations: 5513278925.570871
[2026-03-11 10:10:17] 2026-03-11 14:09:40,273 | INFO     | sum of deviations: -26501783891.8544
[2026-03-11 10:10:17] 2026-03-11 14:09:40,273 | INFO     | mean x: 1773230209.3524904
[2026-03-11 10:10:17] 2026-03-11 14:09:40,274 | INFO     | mean y: 2597901.2375478926
[2026-03-11 10:10:17] 2026-03-11 14:09:40,274 | INFO     | intersect: 8526339296.0013685
[2026-03-11 10:10:17] 2026-03-11 14:09:40,274 | INFO     | chi2: 0.7214763229504797
[2026-03-11 10:10:17] 2026-03-11 14:09:40,274 | INFO     | current chi2=0.7214763229504797 (change=5.293470796035252 %)
[2026-03-11 10:10:17] 2026-03-11 14:09:40,274 | INFO     | left removable region: 20
[2026-03-11 10:10:17] 2026-03-11 14:09:40,278 | INFO     | sum of square deviations: 4286626177.9958224
[2026-03-11 10:10:17] 2026-03-11 14:09:40,282 | INFO     | sum of deviations: -5549862370.962494
[2026-03-11 10:10:17] 2026-03-11 14:09:40,367 | INFO     | mean x: 1773230178.8291667
[2026-03-11 10:10:17] 2026-03-11 14:09:40,370 | INFO     | mean y: 2604048.5375
[2026-03-11 10:10:17] 2026-03-11 14:09:40,370 | INFO     | intersect: 2298391699.6874895
[2026-03-11 10:10:17] 2026-03-11 14:09:40,371 | INFO     | chi2: 0.01691271549929961
[2026-03-11 10:10:17] 2026-03-11 14:09:40,371 | INFO     | current memory leak: -1.29 B/s (using 240 data points, chi2=0.02)
[2026-03-11 10:10:17] 2026-03-11 14:09:40,372 | INFO     | could have reported an average CPU frequency of 2751 MHz (13 samples)
[2026-03-11 10:10:17] 2026-03-11 14:09:40,372 | INFO     | ..............................
[2026-03-11 10:10:17] 2026-03-11 14:09:40,372 | INFO     | . Timing measurements:
[2026-03-11 10:10:17] 2026-03-11 14:09:40,372 | INFO     | . get job = 0 s
[2026-03-11 10:10:17] 2026-03-11 14:09:40,372 | INFO     | . initial setup = 23 s
[2026-03-11 10:10:17] 2026-03-11 14:09:40,372 | INFO     | . payload setup = 22 s
[2026-03-11 10:10:17] 2026-03-11 14:09:40,372 | INFO     | . stage-in = 0 s
[2026-03-11 10:10:17] 2026-03-11 14:09:40,372 | INFO     | . payload execution = 16518 s
[2026-03-11 10:10:17] 2026-03-11 14:09:40,372 | INFO     | . stage-out = 6 s
[2026-03-11 10:10:17] 2026-03-11 14:09:40,372 | INFO     | . log creation = 0 s
[2026-03-11 10:10:17] 2026-03-11 14:09:40,373 | INFO     | ..............................
[2026-03-11 10:10:17] 2026-03-11 14:09:41,036 | INFO     | 
[2026-03-11 10:10:17] 2026-03-11 14:09:41,037 | INFO     | job summary report
[2026-03-11 10:10:17] 2026-03-11 14:09:41,037 | INFO     | --------------------------------------------------
[2026-03-11 10:10:17] 2026-03-11 14:09:41,037 | INFO     | PanDA job id: 7036206656
[2026-03-11 10:10:17] 2026-03-11 14:09:41,037 | INFO     | task id: 48838447
[2026-03-11 10:10:17] 2026-03-11 14:09:41,037 | INFO     | errors: (none)
[2026-03-11 10:10:17] 2026-03-11 14:09:41,037 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 10:10:17] 2026-03-11 14:09:41,037 | INFO     | pilot state: finished 
[2026-03-11 10:10:17] 2026-03-11 14:09:41,037 | INFO     | transexitcode: 0
[2026-03-11 10:10:17] 2026-03-11 14:09:41,037 | INFO     | exeerrorcode: 0
[2026-03-11 10:10:17] 2026-03-11 14:09:41,037 | INFO     | exeerrordiag: 
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | exitcode: 0
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | exitmsg: OK
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | cpuconsumptiontime: 47225 s
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | nevents: 400
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | neventsw: 0
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | pid: 2317372
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | pgrp: 2317372
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | corecount: 9
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | event service: False
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | sizes: {0: 2279756, 1: 2279840, 2: 2279868, 3: 2280329, 14: 2280329, 16545: 2311776, 16552: 2320774, 16553: 2320830, 16555: 2321024}
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | --------------------------------------------------
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | 
[2026-03-11 10:10:17] 2026-03-11 14:09:41,038 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-03-11 10:10:17] 2026-03-11 14:09:41,177 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,177 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,177 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,179 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,179 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,179 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,179 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 10:10:17] 2026-03-11 14:09:41,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,179 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 10:10:17] 2026-03-11 14:09:41,179 | INFO     | job 7036206656 has completed (purged errors)
[2026-03-11 10:10:17] 2026-03-11 14:09:41,179 | INFO     | overall cleanup function is called
[2026-03-11 10:10:17] 2026-03-11 14:09:41,255 | WARNING  | process 2317372 can no longer be monitored (due to stat problems) - aborting
[2026-03-11 10:10:17] 2026-03-11 14:09:42,192 | INFO     | --- collectZombieJob: --- 10, [2317372]
[2026-03-11 10:10:17] 2026-03-11 14:09:42,192 | INFO     | zombie collector waiting for pid 2317372
[2026-03-11 10:10:17] 2026-03-11 14:09:42,192 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 10:10:17] 2026-03-11 14:09:42,192 | INFO     | collected zombie processes
[2026-03-11 10:10:17] 2026-03-11 14:09:42,192 | INFO     | will attempt to kill all subprocesses of pid=2317372
[2026-03-11 10:10:17] 2026-03-11 14:09:42,706 | INFO     | PID=2305754 has CPU usage=14.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-11 10:10:17] 2026-03-11 14:09:42,706 | INFO     | .. there are 52 such processes running
[2026-03-11 10:10:17] 2026-03-11 14:09:42,728 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 10:10:17] 2026-03-11 14:09:42,729 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 10:10:17] 2026-03-11 14:09:42,729 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-11 10:10:17] 2026-03-11 14:09:42,730 | WARNING  | maxPSS not found in memory monitor output
[2026-03-11 10:10:17] 2026-03-11 14:09:42,730 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/2/PanDA_Pilot-7036206656/payload.stdout) since it has not been created yet
[2026-03-11 10:10:17] 2026-03-11 14:09:42,730 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-11 10:10:17] 2026-03-11 14:09:42,799 | INFO     | sufficient remaining disk space (92403662848 B)
[2026-03-11 10:10:17] 2026-03-11 14:09:42,800 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-11 10:10:17] 2026-03-11 14:09:42,800 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-7036206656/HITS.48838447._003980.pool.root.1 since it does not exist
[2026-03-11 10:10:17] 2026-03-11 14:09:44,350 | INFO     | process IDs to be killed: [2317372] (in reverse order)
[2026-03-11 10:10:17] 2026-03-11 14:09:44,704 | INFO     | number of running child processes to parent process 2317372: 1
[2026-03-11 10:10:17] 2026-03-11 14:09:44,705 | INFO     | maximum number of monitored processes: 6
[2026-03-11 10:10:17] 2026-03-11 14:09:44,705 | INFO     | aborting job monitoring since job object (job id=7036206656) has expired
[2026-03-11 10:10:17] 2026-03-11 14:09:45,381 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 10:10:17] 2026-03-11 14:09:45,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 10:10:17] 2026-03-11 14:09:45,515 | INFO     | did not find any defunct processes belonging to 2317372
[2026-03-11 10:10:17] 2026-03-11 14:09:45,592 | INFO     | did not find any defunct processes belonging to 2317372
[2026-03-11 10:10:17] 2026-03-11 14:09:45,593 | INFO     | ready for new job
[2026-03-11 10:10:17] 2026-03-11 14:09:45,614 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 10:10:17] 2026-03-11 14:09:45,617 | INFO     | **************************************
[2026-03-11 10:10:17] 2026-03-11 14:09:45,617 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 10:10:17] 2026-03-11 14:09:45,617 | INFO     | **************************************
[2026-03-11 10:10:17] 2026-03-11 14:09:45,617 | INFO     | 
[2026-03-11 10:10:17] 2026-03-11 14:09:45,623 | INFO     | architecture information:
[2026-03-11 10:10:17] 2026-03-11 14:09:45,623 | INFO     | executing command: cat /etc/os-release
[2026-03-11 10:10:17] 2026-03-11 14:09:45,738 | INFO     | cat /etc/os-release:
[2026-03-11 10:10:17] NAME="CentOS Linux"
[2026-03-11 10:10:17] VERSION="7 (Core)"
[2026-03-11 10:10:17] ID="centos"
[2026-03-11 10:10:17] ID_LIKE="rhel fedora"
[2026-03-11 10:10:17] VERSION_ID="7"
[2026-03-11 10:10:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 10:10:17] ANSI_COLOR="0;31"
[2026-03-11 10:10:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 10:10:17] HOME_URL="https://www.centos.org/"
[2026-03-11 10:10:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 10:10:17] 
[2026-03-11 10:10:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 10:10:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 10:10:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 10:10:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 10:10:17] 
[2026-03-11 10:10:17] 2026-03-11 14:09:45,738 | INFO     | **************************************
[2026-03-11 10:10:17] 2026-03-11 14:09:46,242 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-11 10:10:17] 2026-03-11 14:09:46,316 | INFO     | sufficient remaining disk space (92405760000 B)
[2026-03-11 10:10:17] 2026-03-11 14:09:46,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 10:10:17] 2026-03-11 14:09:46,322 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 10:10:17] 2026-03-11 14:09:46,322 | INFO     | update_server=False
[2026-03-11 10:10:17] 2026-03-11 14:09:46,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 10:10:17] 2026-03-11 14:09:46,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 10:10:17] 2026-03-11 14:09:46,323 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 10:10:17] 2026-03-11 14:09:46,323 | INFO     | aborting loop
[2026-03-11 10:10:17] 2026-03-11 14:09:46,323 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 10:10:17] 2026-03-11 14:09:46,692 | INFO     | all payload control threads have been joined
[2026-03-11 10:10:17] 2026-03-11 14:09:47,328 | INFO     | [job] retrieve thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:47,328 | INFO     | [job] queue monitor thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:47,329 | INFO     | [job] job monitor thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:47,342 | INFO     | all data control threads have been joined
[2026-03-11 10:10:17] 2026-03-11 14:09:47,500 | INFO     | [payload] validate_post thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:47,541 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:47,541 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:47,592 | INFO     | [job] validate thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:47,703 | INFO     | [payload] control thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:47,974 | INFO     | all job control threads have been joined
[2026-03-11 10:10:17] 2026-03-11 14:09:47,989 | INFO     | [payload] failed_post thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:48,330 | INFO     | [data] copytool_out thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:48,348 | INFO     | [data] control thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:48,470 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:48,470 | INFO     | [data] copytool_in thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:48,786 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:48,980 | INFO     | [job] control thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:09:49,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 10:10:17] 2026-03-11 14:09:53,819 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 10:10:17] 2026-03-11 14:10:01,510 | INFO     | [monitor] cgroup control has ended
[2026-03-11 10:10:17] 2026-03-11 14:10:02,814 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140647923652416)>', '<ExcThread(monitor, started 140647268861696)>']
[2026-03-11 10:10:17] 2026-03-11 14:10:07,840 | INFO     | all workflow threads have been joined
[2026-03-11 10:10:17] 2026-03-11 14:10:07,840 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 10:10:17] 2026-03-11 14:10:07,840 | INFO     | traces error code: 0
[2026-03-11 10:10:17] 2026-03-11 14:10:07,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 10:10:17] 2026-03-11 14:10:15,968 | INFO     | PID=2305754 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-11 10:10:17] 2026-03-11 14:10:15,969 | INFO     | .. there are 52 such processes running
[2026-03-11 10:10:17] 2026-03-11 14:10:15,969 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 10:10:17] 2026-03-11 14:10:15,969 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 10:10:17] 2026-03-11 14:10:15,969 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 10:10:17] 2026-03-11 14:10:15,969 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 10:10:17] 2026-03-11 14:10:15,969 | INFO     | [monitor] control thread has ended
[2026-03-11 10:10:17] 2026-03-11 14:10:16,199 [wrapper] ==== pilot stdout END ====
[2026-03-11 10:10:17] 2026-03-11 14:10:16,271 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 10:10:17] 2026-03-11 14:10:16,316 [wrapper] pilotpid: 2305754
[2026-03-11 10:10:17] 2026-03-11 14:10:16,335 [wrapper] Pilot exit status: 0
[2026-03-11 10:10:17] 2026-03-11 14:10:16,463 [wrapper] pandaids: 7036206656
[2026-03-11 10:10:17] 2026-03-11 14:10:17,363 [wrapper] cleanup supervisor_pilot 3325488 2305755
[2026-03-11 10:10:17] 2026-03-11 14:10:17,377 [wrapper] Test setup, not cleaning
[2026-03-11 10:10:17] 2026-03-11 14:10:17,383 [wrapper] apfmon messages muted
[2026-03-11 10:10:17] 2026-03-11 14:10:17,402 [wrapper] ==== wrapper stdout END ====
[2026-03-11 10:10:17] 2026-03-11 14:10:17,415 [wrapper] ==== wrapper stderr END ====
[2026-03-11 10:10:17]  *** Error codes and diagnostics ***
[2026-03-11 10:10:17]     "exeErrorCode": 0,
[2026-03-11 10:10:17]     "exeErrorDiag": "",
[2026-03-11 10:10:17]     "pilotErrorCode": 0,
[2026-03-11 10:10:17]     "pilotErrorDiag": "",
[2026-03-11 10:10:17]  *** Listing of results directory ***
[2026-03-11 10:10:17] total 491908
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas    584627 Mar  2 23:44 pilot3.tar.gz
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas      5111 Mar  2 23:58 queuedata.json
[2026-03-11 10:10:17] -rwx------. 1 boincer umatlas     36322 Mar  2 23:58 runpilot2-wrapper.sh
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas       100 Mar 11 05:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 10:10:17] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 11 05:32 run_atlas
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas       105 Mar 11 05:32 job.xml
[2026-03-11 10:10:17] -rw-r--r--. 2 boincer umatlas 279023413 Mar 11 05:32 EVNT.48220117._000164.pool.root.1
[2026-03-11 10:10:17] -rw-r--r--. 2 boincer umatlas     15845 Mar 11 05:32 start_atlas.sh
[2026-03-11 10:10:17] drwxrwx--x. 2 boincer umatlas      4096 Mar 11 05:32 shared
[2026-03-11 10:10:17] -rw-r--r--. 2 boincer umatlas    597967 Mar 11 05:32 input.tar.gz
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas         0 Mar 11 05:32 boinc_lockfile
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas      2572 Mar 11 05:32 pandaJob.out
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas        57 Mar 11 05:32 setup.sh.local
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas   1006978 Mar 11 05:33 agis_schedconf.cvmfs.json
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas       444 Mar 11 05:33 workernode_map.json
[2026-03-11 10:10:17] drwx------. 5 boincer umatlas      4096 Mar 11 05:33 pilot3
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas      6880 Mar 11 10:02 init_data.xml
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas 215811257 Mar 11 10:08 HITS.48838447._003980.pool.root.1
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas       530 Mar 11 10:08 boinc_task_state.xml
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas      1044 Mar 11 10:09 memory_monitor_summary.json
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas        95 Mar 11 10:09 pilot_heartbeat.json
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas   1511578 Mar 11 10:09 agis_ddmendpoints.agis.ALL.json
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas    484851 Mar 11 10:09 log.48838447._003980.job.log.tgz.1
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas      6395 Mar 11 10:09 heartbeat.json
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas      8192 Mar 11 10:10 boinc_mmap_file
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas        28 Mar 11 10:10 wrapper_checkpoint.txt
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas       823 Mar 11 10:10 pilotlog.txt
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas   1989657 Mar 11 10:10 log.48838447._003980.job.log.1
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas       357 Mar 11 10:10 output.list
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas       620 Mar 11 10:10 runtime_log
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas   2488320 Mar 11 10:10 result.tar.gz
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas      9352 Mar 11 10:10 runtime_log.err
[2026-03-11 10:10:17] -rw-------. 1 boincer umatlas       658 Mar 11 10:10 PEnKDm80WH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmoiFLDmLnCAXn.diag
[2026-03-11 10:10:17] -rw-r--r--. 1 boincer umatlas     21685 Mar 11 10:10 stderr.txt
[2026-03-11 10:10:18] HITS file was successfully produced:
[2026-03-11 10:10:18] -rw-------. 1 boincer umatlas 215811257 Mar 11 10:08 shared/HITS.pool.root.1
[2026-03-11 10:10:18]  *** Contents of shared directory: ***
[2026-03-11 10:10:18] total 486276
[2026-03-11 10:10:18] -rw-r--r--. 2 boincer umatlas 279023413 Mar 11 05:32 ATLAS.root_0
[2026-03-11 10:10:18] -rw-r--r--. 2 boincer umatlas     15845 Mar 11 05:32 start_atlas.sh
[2026-03-11 10:10:18] -rw-r--r--. 2 boincer umatlas    597967 Mar 11 05:32 input.tar.gz
[2026-03-11 10:10:18] -rw-------. 1 boincer umatlas 215811257 Mar 11 10:08 HITS.pool.root.1
[2026-03-11 10:10:18] -rw-------. 1 boincer umatlas   2488320 Mar 11 10:10 result.tar.gz
10:10:19 (2299072): run_atlas exited; CPU time 48095.479109
10:10:19 (2299072): called boinc_finish(0)

</stderr_txt>
]]>

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